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D4A604

- D4A604_RAT

UniProt

D4A604 - D4A604_RAT

Protein
Submitted name:

Phosphatidylinositol glycan, class T (Predicted), isoform CRA_b

Gene

Pigt

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. GPI-anchor transamidase activity Source: Ensembl

    GO - Biological processi

    1. attachment of GPI anchor to protein Source: InterPro
    2. neuron apoptotic process Source: Ensembl
    3. neuron differentiation Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Phosphatidylinositol glycan, class T (Predicted), isoform CRA_bImported
    Submitted name:
    Protein PigtImported
    Gene namesi
    Name:PigtImported
    Synonyms:Pigt_predictedImported
    ORF Names:rCG_32406Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 3

    Organism-specific databases

    RGDi1307156. Pigt.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasmic membrane-bounded vesicle Source: Ensembl
    2. GPI-anchor transamidase complex Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000018558.
    KOiK05292.
    OMAiTLEVNPP.
    OrthoDBiEOG70PBXH.
    TreeFamiTF105921.

    Family and domain databases

    InterProiIPR007245. PIG-T.
    [Graphical view]
    PANTHERiPTHR12959. PTHR12959. 1 hit.
    PfamiPF04113. Gpi16. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A604-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAAAMPLGLS LLLLVLVGQG CCGRVEGPRD SLREELVITP LPSGDVAATF    50
    QFRTRWDSDL QREGVSHYRL FPKALGQLIS KYSLRELHLS FTQGFWRTRY 100
    WGPPFLQAPS GAELWVWFQD TVTDVDKSWK ELSNVLSGIF CASLNFIDST 150
    NTVTPTASFK PLGLANDTDH YFLRYAVLPR EVVCTENLTP WKKLLPCSSK 200
    AGLSVLLKAD RLFHTSYHSQ AVHIRPICRN AHCTSISWEL RQTLSVVFDA 250
    FITGQGKKDW SLFRMFSRTL TEACPLASQS LVYVDITGYS QDNETLEVSP 300
    PPTSTYQDVI LGTRKTYAVY DLFDTAMINN SRNLNIQLKW KRPPDNEALP 350
    VPFLHAQRYV SGYGLQKGEL STLLYNSHPY RAFPVLLLDA VPWYLRLYVH 400
    TLTITSKGKD NKPSYIHYQP AQDRQQPHLL EMLIQLPANS VTKVSIQFER 450
    ALLKWTEYTP DPNHGFYVSP SVLSALVPSM VAAKPVDWEE SPLFNTLFPV 500
    SDGSSYFVRL YTEPLLVNLP TPDFSMPYNV ICLTCTVVAV CYGSFYNLLT 550
    RTFHIEEPKS GGLAKRLANL IRRARGVPPL 580
    Length:580
    Mass (Da):65,550
    Last modified:April 20, 2010 - v1
    Checksum:i151EBC2B883FB64F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06027540 Genomic DNA. No translation available.
    CH474005 Genomic DNA. Translation: EDL96515.1.
    RefSeqiNP_001100010.2. NM_001106540.2.
    UniGeneiRn.40489.

    Genome annotation databases

    EnsembliENSRNOT00000019761; ENSRNOP00000019761; ENSRNOG00000014690.
    GeneIDi296360.
    KEGGirno:296360.
    UCSCiRGD:1307156. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06027540 Genomic DNA. No translation available.
    CH474005 Genomic DNA. Translation: EDL96515.1 .
    RefSeqi NP_001100010.2. NM_001106540.2.
    UniGenei Rn.40489.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000019761 ; ENSRNOP00000019761 ; ENSRNOG00000014690 .
    GeneIDi 296360.
    KEGGi rno:296360.
    UCSCi RGD:1307156. rat.

    Organism-specific databases

    CTDi 51604.
    RGDi 1307156. Pigt.

    Phylogenomic databases

    GeneTreei ENSGT00390000018558.
    KOi K05292.
    OMAi TLEVNPP.
    OrthoDBi EOG70PBXH.
    TreeFami TF105921.

    Miscellaneous databases

    NextBioi 641087.
    PROi D4A604.

    Family and domain databases

    InterProi IPR007245. PIG-T.
    [Graphical view ]
    PANTHERi PTHR12959. PTHR12959. 1 hit.
    Pfami PF04113. Gpi16. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A604_RAT
    AccessioniPrimary (citable) accession number: D4A604
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3