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D4A604

- D4A604_RAT

UniProt

D4A604 - D4A604_RAT

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Protein
Submitted name: Phosphatidylinositol glycan, class T (Predicted), isoform CRA_b
Gene
Pigt, Pigt_predicted, rCG_32406
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. GPI-anchor transamidase activity Source: Ensembl
Complete GO annotation...

GO - Biological processi

  1. attachment of GPI anchor to protein Source: InterPro
  2. neuron apoptotic process Source: Ensembl
  3. neuron differentiation Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Phosphatidylinositol glycan, class T (Predicted), isoform CRA_bImported
Submitted name:
Protein PigtImported
Gene namesi
Name:PigtImported
Synonyms:Pigt_predictedImported
ORF Names:rCG_32406Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 3

Organism-specific databases

RGDi1307156. Pigt.

Subcellular locationi

GO - Cellular componenti

  1. GPI-anchor transamidase complex Source: Ensembl
  2. cytoplasmic membrane-bounded vesicle Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000018558.
KOiK05292.
OMAiTLEVNPP.
OrthoDBiEOG70PBXH.
TreeFamiTF105921.

Family and domain databases

InterProiIPR007245. PIG-T.
[Graphical view]
PANTHERiPTHR12959. PTHR12959. 1 hit.
PfamiPF04113. Gpi16. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A604-1 [UniParc]FASTAAdd to Basket

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MAAAMPLGLS LLLLVLVGQG CCGRVEGPRD SLREELVITP LPSGDVAATF    50
QFRTRWDSDL QREGVSHYRL FPKALGQLIS KYSLRELHLS FTQGFWRTRY 100
WGPPFLQAPS GAELWVWFQD TVTDVDKSWK ELSNVLSGIF CASLNFIDST 150
NTVTPTASFK PLGLANDTDH YFLRYAVLPR EVVCTENLTP WKKLLPCSSK 200
AGLSVLLKAD RLFHTSYHSQ AVHIRPICRN AHCTSISWEL RQTLSVVFDA 250
FITGQGKKDW SLFRMFSRTL TEACPLASQS LVYVDITGYS QDNETLEVSP 300
PPTSTYQDVI LGTRKTYAVY DLFDTAMINN SRNLNIQLKW KRPPDNEALP 350
VPFLHAQRYV SGYGLQKGEL STLLYNSHPY RAFPVLLLDA VPWYLRLYVH 400
TLTITSKGKD NKPSYIHYQP AQDRQQPHLL EMLIQLPANS VTKVSIQFER 450
ALLKWTEYTP DPNHGFYVSP SVLSALVPSM VAAKPVDWEE SPLFNTLFPV 500
SDGSSYFVRL YTEPLLVNLP TPDFSMPYNV ICLTCTVVAV CYGSFYNLLT 550
RTFHIEEPKS GGLAKRLANL IRRARGVPPL 580
Length:580
Mass (Da):65,550
Last modified:April 20, 2010 - v1
Checksum:i151EBC2B883FB64F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06027540 Genomic DNA. No translation available.
CH474005 Genomic DNA. Translation: EDL96515.1.
RefSeqiNP_001100010.2. NM_001106540.2.
UniGeneiRn.40489.

Genome annotation databases

EnsembliENSRNOT00000019761; ENSRNOP00000019761; ENSRNOG00000014690.
GeneIDi296360.
KEGGirno:296360.
UCSCiRGD:1307156. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06027540 Genomic DNA. No translation available.
CH474005 Genomic DNA. Translation: EDL96515.1 .
RefSeqi NP_001100010.2. NM_001106540.2.
UniGenei Rn.40489.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000019761 ; ENSRNOP00000019761 ; ENSRNOG00000014690 .
GeneIDi 296360.
KEGGi rno:296360.
UCSCi RGD:1307156. rat.

Organism-specific databases

CTDi 51604.
RGDi 1307156. Pigt.

Phylogenomic databases

GeneTreei ENSGT00390000018558.
KOi K05292.
OMAi TLEVNPP.
OrthoDBi EOG70PBXH.
TreeFami TF105921.

Miscellaneous databases

NextBioi 641087.
PROi D4A604.

Family and domain databases

InterProi IPR007245. PIG-T.
[Graphical view ]
PANTHERi PTHR12959. PTHR12959. 1 hit.
Pfami PF04113. Gpi16. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A604_RAT
AccessioniPrimary (citable) accession number: D4A604
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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