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D4A604

- D4A604_RAT

UniProt

D4A604 - D4A604_RAT

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Protein
Submitted name:

Phosphatidylinositol glycan, class T (Predicted), isoform CRA_b

Gene

Pigt

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. GPI-anchor transamidase activity Source: Ensembl

GO - Biological processi

  1. attachment of GPI anchor to protein Source: InterPro
  2. neuron apoptotic process Source: Ensembl
  3. neuron differentiation Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Phosphatidylinositol glycan, class T (Predicted), isoform CRA_bImported
Submitted name:
Protein PigtImported
Gene namesi
Name:PigtImported
Synonyms:Pigt_predictedImported
ORF Names:rCG_32406Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 3

Organism-specific databases

RGDi1307156. Pigt.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasmic membrane-bounded vesicle Source: Ensembl
  2. GPI-anchor transamidase complex Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000018558.
KOiK05292.
OMAiTLEVNPP.
OrthoDBiEOG70PBXH.
TreeFamiTF105921.

Family and domain databases

InterProiIPR007245. PIG-T.
[Graphical view]
PANTHERiPTHR12959. PTHR12959. 1 hit.
PfamiPF04113. Gpi16. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A604-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAAAMPLGLS LLLLVLVGQG CCGRVEGPRD SLREELVITP LPSGDVAATF
60 70 80 90 100
QFRTRWDSDL QREGVSHYRL FPKALGQLIS KYSLRELHLS FTQGFWRTRY
110 120 130 140 150
WGPPFLQAPS GAELWVWFQD TVTDVDKSWK ELSNVLSGIF CASLNFIDST
160 170 180 190 200
NTVTPTASFK PLGLANDTDH YFLRYAVLPR EVVCTENLTP WKKLLPCSSK
210 220 230 240 250
AGLSVLLKAD RLFHTSYHSQ AVHIRPICRN AHCTSISWEL RQTLSVVFDA
260 270 280 290 300
FITGQGKKDW SLFRMFSRTL TEACPLASQS LVYVDITGYS QDNETLEVSP
310 320 330 340 350
PPTSTYQDVI LGTRKTYAVY DLFDTAMINN SRNLNIQLKW KRPPDNEALP
360 370 380 390 400
VPFLHAQRYV SGYGLQKGEL STLLYNSHPY RAFPVLLLDA VPWYLRLYVH
410 420 430 440 450
TLTITSKGKD NKPSYIHYQP AQDRQQPHLL EMLIQLPANS VTKVSIQFER
460 470 480 490 500
ALLKWTEYTP DPNHGFYVSP SVLSALVPSM VAAKPVDWEE SPLFNTLFPV
510 520 530 540 550
SDGSSYFVRL YTEPLLVNLP TPDFSMPYNV ICLTCTVVAV CYGSFYNLLT
560 570 580
RTFHIEEPKS GGLAKRLANL IRRARGVPPL
Length:580
Mass (Da):65,550
Last modified:April 20, 2010 - v1
Checksum:i151EBC2B883FB64F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06027540 Genomic DNA. No translation available.
CH474005 Genomic DNA. Translation: EDL96515.1.
RefSeqiNP_001100010.2. NM_001106540.2.
UniGeneiRn.40489.

Genome annotation databases

EnsembliENSRNOT00000019761; ENSRNOP00000019761; ENSRNOG00000014690.
GeneIDi296360.
KEGGirno:296360.
UCSCiRGD:1307156. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06027540 Genomic DNA. No translation available.
CH474005 Genomic DNA. Translation: EDL96515.1 .
RefSeqi NP_001100010.2. NM_001106540.2.
UniGenei Rn.40489.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000019761 ; ENSRNOP00000019761 ; ENSRNOG00000014690 .
GeneIDi 296360.
KEGGi rno:296360.
UCSCi RGD:1307156. rat.

Organism-specific databases

CTDi 51604.
RGDi 1307156. Pigt.

Phylogenomic databases

GeneTreei ENSGT00390000018558.
KOi K05292.
OMAi TLEVNPP.
OrthoDBi EOG70PBXH.
TreeFami TF105921.

Miscellaneous databases

NextBioi 641087.
PROi D4A604.

Family and domain databases

InterProi IPR007245. PIG-T.
[Graphical view ]
PANTHERi PTHR12959. PTHR12959. 1 hit.
Pfami PF04113. Gpi16. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A604_RAT
AccessioniPrimary (citable) accession number: D4A604
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 1, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3