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D4A604 (D4A604_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Protein Pigt Ensembl ENSRNOP00000019761
Gene names
Name:Pigt RGD 1307156 Ensembl ENSRNOP00000019761
Synonyms:Pigt_predicted EMBL EDL96515.1
ORF Names:rCG_32406 EMBL EDL96515.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000019761
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length580 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D4A604 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 151EBC2B883FB64F

FASTA58065,550
        10         20         30         40         50         60 
MAAAMPLGLS LLLLVLVGQG CCGRVEGPRD SLREELVITP LPSGDVAATF QFRTRWDSDL 

        70         80         90        100        110        120 
QREGVSHYRL FPKALGQLIS KYSLRELHLS FTQGFWRTRY WGPPFLQAPS GAELWVWFQD 

       130        140        150        160        170        180 
TVTDVDKSWK ELSNVLSGIF CASLNFIDST NTVTPTASFK PLGLANDTDH YFLRYAVLPR 

       190        200        210        220        230        240 
EVVCTENLTP WKKLLPCSSK AGLSVLLKAD RLFHTSYHSQ AVHIRPICRN AHCTSISWEL 

       250        260        270        280        290        300 
RQTLSVVFDA FITGQGKKDW SLFRMFSRTL TEACPLASQS LVYVDITGYS QDNETLEVSP 

       310        320        330        340        350        360 
PPTSTYQDVI LGTRKTYAVY DLFDTAMINN SRNLNIQLKW KRPPDNEALP VPFLHAQRYV 

       370        380        390        400        410        420 
SGYGLQKGEL STLLYNSHPY RAFPVLLLDA VPWYLRLYVH TLTITSKGKD NKPSYIHYQP 

       430        440        450        460        470        480 
AQDRQQPHLL EMLIQLPANS VTKVSIQFER ALLKWTEYTP DPNHGFYVSP SVLSALVPSM 

       490        500        510        520        530        540 
VAAKPVDWEE SPLFNTLFPV SDGSSYFVRL YTEPLLVNLP TPDFSMPYNV ICLTCTVVAV 

       550        560        570        580 
CYGSFYNLLT RTFHIEEPKS GGLAKRLANL IRRARGVPPL 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000019761.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL96515.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL96515.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000019761.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06027540 Genomic DNA. No translation available.
CH474005 Genomic DNA. Translation: EDL96515.1.
RefSeqNP_001100010.2. NM_001106540.2.
UniGeneRn.40489.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000019761; ENSRNOP00000019761; ENSRNOG00000014690.
GeneID296360.
KEGGrno:296360.
UCSCRGD:1307156. rat.

Organism-specific databases

CTD51604.
RGD1307156. Pigt.

Phylogenomic databases

GeneTreeENSGT00390000018558.
KOK05292.
OMATLEVNPP.
OrthoDBEOG70PBXH.
TreeFamTF105921.

Family and domain databases

InterProIPR007245. PIG-T.
[Graphical view]
PANTHERPTHR12959. PTHR12959. 1 hit.
PfamPF04113. Gpi16. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio641087.
PROD4A604.

Entry information

Entry nameD4A604_RAT
AccessionPrimary (citable) accession number: D4A604
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 19, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)