D4A604 (D4A604_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Phosphatidylinositol glycan, class T (Predicted), isoform CRA_b EMBL EDL96515.1

Submitted name:
Protein Pigt Ensembl ENSRNOP00000019761

Gene names

Name:	Pigt RGD 1307156 Ensembl ENSRNOP00000019761
Synonyms:	Pigt_predicted EMBL EDL96515.1
ORF Names:	rCG_32406 EMBL EDL96515.1

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000019761

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	580 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	attachment of GPI anchor to protein Inferred from electronic annotation. Source: InterPro neuron apoptotic process Inferred from electronic annotation. Source: Compara neuron differentiation Inferred from electronic annotation. Source: Compara
Cellular_component	GPI-anchor transamidase complex Inferred from electronic annotation. Source: Compara cytoplasmic membrane-bounded vesicle Inferred from electronic annotation. Source: Compara
Molecular_function	GPI-anchor transamidase activity Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D4A604 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 151EBC2B883FB64F	FASTA	580	65,550
	10 20 30 40 50 60 MAAAMPLGLS LLLLVLVGQG CCGRVEGPRD SLREELVITP LPSGDVAATF QFRTRWDSDL 70 80 90 100 110 120 QREGVSHYRL FPKALGQLIS KYSLRELHLS FTQGFWRTRY WGPPFLQAPS GAELWVWFQD 130 140 150 160 170 180 TVTDVDKSWK ELSNVLSGIF CASLNFIDST NTVTPTASFK PLGLANDTDH YFLRYAVLPR 190 200 210 220 230 240 EVVCTENLTP WKKLLPCSSK AGLSVLLKAD RLFHTSYHSQ AVHIRPICRN AHCTSISWEL 250 260 270 280 290 300 RQTLSVVFDA FITGQGKKDW SLFRMFSRTL TEACPLASQS LVYVDITGYS QDNETLEVSP 310 320 330 340 350 360 PPTSTYQDVI LGTRKTYAVY DLFDTAMINN SRNLNIQLKW KRPPDNEALP VPFLHAQRYV 370 380 390 400 410 420 SGYGLQKGEL STLLYNSHPY RAFPVLLLDA VPWYLRLYVH TLTITSKGKD NKPSYIHYQP 430 440 450 460 470 480 AQDRQQPHLL EMLIQLPANS VTKVSIQFER ALLKWTEYTP DPNHGFYVSP SVLSALVPSM 490 500 510 520 530 540 VAAKPVDWEE SPLFNTLFPV SDGSSYFVRL YTEPLLVNLP TPDFSMPYNV ICLTCTVVAV 550 560 570 580 CYGSFYNLLT RTFHIEEPKS GGLAKRLANL IRRARGVPPL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000019761.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDL96515.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDL96515.1.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000019761.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06027540 Genomic DNA. No translation available. CH474005 Genomic DNA. Translation: EDL96515.1.
IPI	IPI00373349.
RefSeq	NP_001100010.2. NM_001106540.2.
UniGene	Rn.40489.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000019761; ENSRNOP00000019761; ENSRNOG00000014690.
GeneID	296360.
KEGG	rno:296360.
UCSC	RGD:1307156. rat.
Organism-specific databases
CTD	51604.
RGD	1307156. Pigt.
Phylogenomic databases
GeneTree	ENSGT00390000018558.
KO	K05292.
OMA	LQLKWKR.
OrthoDB	EOG4R7V9J.
Family and domain databases
InterPro	IPR007245. PIG-T. [Graphical view]
PANTHER	PTHR12959. PTHR12959. 1 hit.
Pfam	PF04113. Gpi16. 2 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	641087.

Entry information

Entry name

D4A604_RAT

Accession

Primary (citable) accession number: D4A604

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)