D4A510 (D4A510_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Smarcc2 Ensembl ENSRNOP00000028244

Gene names

Name:

Smarcc2 Ensembl ENSRNOP00000028244 RGD 1597704

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000028244

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1130 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000028244

Ontologies

Keywords
Cellular component	Nucleus SAAS SAAS017884
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro chromatin binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D4A510 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: DB9D170BAA2186A0	FASTA	1,130	124,279
	10 20 30 40 50 60 MAVRKKDGGP NVKYYEAADT VTQFDNVRLW LGKNYKKYIQ AEPPTNKSLS SLVVQLLQFQ 70 80 90 100 110 120 EEVFGKHVSN APLTKLPIKC FLDFKAGGSL CHILAAAYKF KSDQGWRRYD FQNPSRMDRN 130 140 150 160 170 180 VEMFMTIEKS LVQNNCLSRP NIFLCPEIEP KLLGKLKDIV KRHQGTISED KSNASHVVYP 190 200 210 220 230 240 APGNLEEEEW VRPVMKRDKQ VLLHWGYYPD SYDTWIPASE IEASVEDAPT PEKPRKVHAK 250 260 270 280 290 300 WILDTDTFNE WMNEEDYEVS DDKSPVSRRK KISAKTLTDE VNSPDADRRD KKGGNYKKRK 310 320 330 340 350 360 RSPSPSPTPE AKKKNAKKGP STPYTKSKRG HREEEQEDLT KDMDEPSPVP NVEEVTLPKT 370 380 390 400 410 420 VNTKKDSESA PVKGGTMTDL DEQDDESMET TGKDEDENST GNKGEQTKSA DLHEDNVTEQ 430 440 450 460 470 480 THHIIVPSYA AWFDYNSVHA IERRALPEFF NGKNKSKTPE IYLAYRNFMI DTYRLNPQEY 490 500 510 520 530 540 LTSTACRRNL AGDVCAIMRV HAFLEQWGLI NYQVDAESRP TPMGPPPTSH FHVLADTPSG 550 560 570 580 590 600 LVPLQPKPPQ GRQVDADTKA GRKGKELDDL VPEAAKGKPE LQGSASQQML NFPDKGKEKP 610 620 630 640 650 660 ADMQNFGLRT DMYTKKNIPS KSKAAASATR EWTEQETLLL LEALEMYKDD WNKVSEHVGS 670 680 690 700 710 720 RTQDECILHF LRLPIEDPYL EDSEASLGPL AYQPIPFSQS GNPVMSTVAF LASVVDPRVA 730 740 750 760 770 780 SAAAKSALEE FSKMKEEVPT ALVEAHVRKV EEAAKVTGKA DPAFGLESSG IAGTASDEPE 790 800 810 820 830 840 RIEESGTEEA RAESQAADEK KEPKEPREGG GAVEEEAKEE ISEAPKKDEE KGKEADSEKE 850 860 870 880 890 900 SEKSDGDPIV DPEKDKEPTE GQEEGLKEVA EPEGERKAKV ERDIGEGNLS TAAAAALAAA 910 920 930 940 950 960 AVKAKHLAAV EERKIKSLVA LLVETQMKKL EIKLRHFEEL ETIMDREREA LEYQRQQLLA 970 980 990 1000 1010 1020 DRQAFHMEQL KYAEMRARQQ HFQQMQQQPP PPPPPLPPGS QPIPPTGAAA PATVHGLAVA 1030 1040 1050 1060 1070 1080 PASVASAPPG GGAPPGTLGP SEQIGQAGTT AGPQQPQQAG APQPGAVPPG VPPPGPHGPS 1090 1100 1110 1120 1130 PFPNQQTPPS MMPGAVPGSG HPGVADPGTP LPPDPTAPSP GTVTPVPPPQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000028244.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000028244.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06047172 Genomic DNA. No translation available.
IPI	IPI00393081.
3D structure databases
ProteinModelPortal	D4A510.
ModBase	Search...
PTM databases
PhosphoSite	D4A510.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000028244; ENSRNOP00000028244; ENSRNOG00000031135.
KEGG	rno:685179.
UCSC	RGD:1597704. rat.
Organism-specific databases
RGD	1597704. Smarcc2.
Phylogenomic databases
GeneTree	ENSGT00390000018166.
KO	K11649.
Gene expression databases
ArrayExpress	D4A510.
Family and domain databases
Gene3D	1.10.10.10. 1 hit. 1.10.10.60. 1 hit.
InterPro	IPR001357. BRCT_dom. IPR000953. Chromo_domain/shadow. IPR009057. Homeodomain-like. IPR001005. SANT/Myb. IPR017884. SANT_dom. IPR007526. SWIRM. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00249. Myb_DNA-binding. 1 hit. PF04433. SWIRM. 1 hit. [Graphical view]
SMART	SM00298. CHROMO. 1 hit. SM00717. SANT. 1 hit. [Graphical view]
SUPFAM	SSF52113. BRCT. 1 hit. SSF46689. Homeodomain_like. 2 hits.
PROSITE	PS51293. SANT. 1 hit. PS50934. SWIRM. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	729140.

Entry information

Entry name

D4A510_RAT

Accession

Primary (citable) accession number: D4A510

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 3, 2013
Last modified:	May 1, 2013
This is version 30 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)