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D4A4K6

- D4A4K6_RAT

UniProt

D4A4K6 - D4A4K6_RAT

Protein
Submitted name:

Protein Nrap

Gene

Nrap

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein NrapImported
    Gene namesi
    Name:NrapImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 1

    Organism-specific databases

    RGDi1306731. Nrap.

    Subcellular locationi

    GO - Cellular componenti

    1. fascia adherens Source: Ensembl
    2. muscle tendon junction Source: Ensembl
    3. myofibril Source: Ensembl

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 LIM zinc-binding domain.UniRule annotation

    Keywords - Domaini

    LIM domainUniRule annotationSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00530000062924.
    OMAiFHLPMDM.
    OrthoDBiEOG7GFB81.
    PhylomeDBiD4A4K6.
    TreeFamiTF313758.

    Family and domain databases

    Gene3Di2.10.110.10. 1 hit.
    InterProiIPR013998. Nebulin.
    IPR000900. Nebulin_repeat.
    IPR001781. Znf_LIM.
    [Graphical view]
    PfamiPF00412. LIM. 1 hit.
    PF00880. Nebulin. 16 hits.
    [Graphical view]
    PRINTSiPR00510. NEBULIN.
    SMARTiSM00132. LIM. 1 hit.
    SM00227. NEBU. 42 hits.
    [Graphical view]
    PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
    PS50023. LIM_DOMAIN_2. 1 hit.
    PS51216. NEBULIN. 41 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A4K6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNMQACSRCG YGVYPAEKVS CIDQTWHKAC FHCEVCKMML SVNNFVSHQK     50
    KPYCHAHNPK NNTFTSVYRT PLNLTLKNSV AAMGGTDGKE DGEQFKSVLH 100
    WDMKSKAGAG AASRLMNERD YWPGYGEGNT WCPGALPDPE IVRMVEARQS 150
    LREGYTEDGE QPQGKGSFPA MITPAYQRAK AANQLASQVQ YKRGHDERVS 200
    TFTPVADTPE LLRANAGGQL QNDVRYTEDG GQQRGKGSFP AMITPAYQIA 250
    KRAAELASDV RYHQQYHREM KGVASPVGAE GTMTKDSIDR CGQTYSEECE 300
    EHRGKGSFPA MITPAYQNAK KANELASDIK YRQDFHKMKG AAHFHSLAAQ 350
    DNLVLQRAQN VSKLVSEVEY KKGLENSKGH SINYCETPQF RNVSKISKFT 400
    SDNKYKENYQ THLRGHYEGV GMDRRMLHAL KVGSLASNVA YKADYKHDVV 450
    DYNYPATATP FYQTTMKLAP LKDVNYRQNI DRLKFSSVTN TPQIVQAKIN 500
    AQQLSHVNYR ADYERNKLNY TLPQDAPQML KAKANAQLFS EVKYKEGWQK 550
    TKGKGFEMKL DAMSLLAAKA SGELASSIKY KEEYEKTKGR VLGTTDSKLL 600
    HSLQVAKMSS EVEYKKGFEE SKTHFHLPMD MVNLRHAKKA QALASDLDYR 650
    KKLHDYTVLP EDLKTQWAKK AHGLQSELQY KADLAWMKGV GWLTEGSLNL 700
    EQAKKAGQLV SEKHYRQKVD ELKFTSVTDS SQMEHAKKSQ ELQNAVAYKA 750
    GNEQSVHQYT ISKDEPFFLR ARANAAQLSE TLYKSSWEKQ KAKGFELRLD 800
    SLTFLTAKAK RDLASEVKYK EDYERSRGKL IGAKSAQGDS QMSHSLQMSK 850
    LQSELEYKKG FEDTRSQYHV SLDMIHLAHA RQAQHLATDV GYRTASHCFT 900
    ALPTDMKVEW AKKAYSLQSD NQYRADMKWM KGTGWVATGS LNVEQAKKAG 950
    ELISEKKYRQ HPDALKFTSI KDTPEMVQAR ISYTQAVDRL YREQGENLKH 1000
    HYTQTVDLPE VLLAKLNAMN ISETRYKESW SRLRDGGYKL RLDALPFQAA 1050
    KASSEVISDY KYKEAFERMK GQLLGSRSLE DDLSLAHSVH ATSLQSDVNY 1100
    KKGFEHSKAH FHLPLDMVTL VHAKKAQTLA SNQDYRHPLP QHTSLAEDLR 1150
    LRCAKKAHKL QSENLYRSDL NFMRGVPCVI PGALEIEGRK KASELISESK 1200
    YRQHPGSFKY TAVTDTPNLL HAKFSNQITN ERLYKAAGED ARHQYTMTLG 1250
    LPEFIRAKTN AANLSEAKYK ESWHNLRAQG YKLTIDALPF QAARASGDIA 1300
    SDFLYRHEFV KERGQLIGVR SVSDDPRLRH CQRMGQLQSE NWYRKEAASS 1350
    QAQYHLPMDM VPLVHARKAQ ALASDHDYRT QCHEFTALPE DLKMAWAKKA 1400
    HALQSEFRYK ADLMGMKGSG WLALQSPQIE SAKKAGELIS ETKYREKPDS 1450
    IKFTTVVDSP DLVHARKSYE HCNERLYRLG DADSLHRYTP IADHPDFTRA 1500
    RLNAMHLSDK VYRNSWEKNR AGGYDFRLDA IPFQTARASR DIASDFRYKE 1550
    AFLRDRGLQI GYRSVNDDPR MRHFLRVGRL QSDNEYRKDF AKGRSQFHSR 1600
    PDQPGFLQAK RSQQLASDVL YRQPLPQHTS DPEELGLKHA RKAHQLQSDV 1650
    KYKSDLNLTR GVGWTPPGSY KVEMARRAAE LANRRGLGIQ GASVETEAVE 1700
    LGDHRSRGVN PDASEILHIN RKKTLLM 1727
    Length:1,727
    Mass (Da):196,300
    Last modified:April 20, 2010 - v1
    Checksum:i0F35C3D27B7E626A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06011096 Genomic DNA. No translation available.
    AABR06011097 Genomic DNA. No translation available.
    AABR06011098 Genomic DNA. No translation available.
    AABR06011099 Genomic DNA. No translation available.
    RefSeqiNP_001107215.1. NM_001113743.1.
    UniGeneiRn.35035.

    Genome annotation databases

    EnsembliENSRNOT00000038038; ENSRNOP00000030387; ENSRNOG00000016714.
    GeneIDi307982.
    KEGGirno:307982.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06011096 Genomic DNA. No translation available.
    AABR06011097 Genomic DNA. No translation available.
    AABR06011098 Genomic DNA. No translation available.
    AABR06011099 Genomic DNA. No translation available.
    RefSeqi NP_001107215.1. NM_001113743.1.
    UniGenei Rn.35035.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000038038 ; ENSRNOP00000030387 ; ENSRNOG00000016714 .
    GeneIDi 307982.
    KEGGi rno:307982.

    Organism-specific databases

    CTDi 4892.
    RGDi 1306731. Nrap.

    Phylogenomic databases

    GeneTreei ENSGT00530000062924.
    OMAi FHLPMDM.
    OrthoDBi EOG7GFB81.
    PhylomeDBi D4A4K6.
    TreeFami TF313758.

    Miscellaneous databases

    NextBioi 35572474.
    PROi D4A4K6.

    Family and domain databases

    Gene3Di 2.10.110.10. 1 hit.
    InterProi IPR013998. Nebulin.
    IPR000900. Nebulin_repeat.
    IPR001781. Znf_LIM.
    [Graphical view ]
    Pfami PF00412. LIM. 1 hit.
    PF00880. Nebulin. 16 hits.
    [Graphical view ]
    PRINTSi PR00510. NEBULIN.
    SMARTi SM00132. LIM. 1 hit.
    SM00227. NEBU. 42 hits.
    [Graphical view ]
    PROSITEi PS00478. LIM_DOMAIN_1. 1 hit.
    PS50023. LIM_DOMAIN_2. 1 hit.
    PS51216. NEBULIN. 41 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A4K6_RAT
    AccessioniPrimary (citable) accession number: D4A4K6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3