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D4A4K6

- D4A4K6_RAT

UniProt

D4A4K6 - D4A4K6_RAT

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Protein
Submitted name:

Protein Nrap

Gene

Nrap

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Protein NrapImported
Gene namesi
Name:NrapImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 1

Organism-specific databases

RGDi1306731. Nrap.

Subcellular locationi

GO - Cellular componenti

  1. fascia adherens Source: Ensembl
  2. muscle tendon junction Source: Ensembl
  3. myofibril Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

ExpressionAtlasiD4A4K6. baseline and differential.

Family & Domainsi

Sequence similaritiesi

Contains 1 LIM zinc-binding domain.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotationSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00530000062924.
InParanoidiD4A4K6.
OMAiFHLPMDM.
OrthoDBiEOG7GFB81.
PhylomeDBiD4A4K6.
TreeFamiTF313758.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR013998. Nebulin.
IPR000900. Nebulin_repeat.
IPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 1 hit.
PF00880. Nebulin. 16 hits.
[Graphical view]
PRINTSiPR00510. NEBULIN.
SMARTiSM00132. LIM. 1 hit.
SM00227. NEBU. 42 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS51216. NEBULIN. 41 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A4K6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNMQACSRCG YGVYPAEKVS CIDQTWHKAC FHCEVCKMML SVNNFVSHQK
60 70 80 90 100
KPYCHAHNPK NNTFTSVYRT PLNLTLKNSV AAMGGTDGKE DGEQFKSVLH
110 120 130 140 150
WDMKSKAGAG AASRLMNERD YWPGYGEGNT WCPGALPDPE IVRMVEARQS
160 170 180 190 200
LREGYTEDGE QPQGKGSFPA MITPAYQRAK AANQLASQVQ YKRGHDERVS
210 220 230 240 250
TFTPVADTPE LLRANAGGQL QNDVRYTEDG GQQRGKGSFP AMITPAYQIA
260 270 280 290 300
KRAAELASDV RYHQQYHREM KGVASPVGAE GTMTKDSIDR CGQTYSEECE
310 320 330 340 350
EHRGKGSFPA MITPAYQNAK KANELASDIK YRQDFHKMKG AAHFHSLAAQ
360 370 380 390 400
DNLVLQRAQN VSKLVSEVEY KKGLENSKGH SINYCETPQF RNVSKISKFT
410 420 430 440 450
SDNKYKENYQ THLRGHYEGV GMDRRMLHAL KVGSLASNVA YKADYKHDVV
460 470 480 490 500
DYNYPATATP FYQTTMKLAP LKDVNYRQNI DRLKFSSVTN TPQIVQAKIN
510 520 530 540 550
AQQLSHVNYR ADYERNKLNY TLPQDAPQML KAKANAQLFS EVKYKEGWQK
560 570 580 590 600
TKGKGFEMKL DAMSLLAAKA SGELASSIKY KEEYEKTKGR VLGTTDSKLL
610 620 630 640 650
HSLQVAKMSS EVEYKKGFEE SKTHFHLPMD MVNLRHAKKA QALASDLDYR
660 670 680 690 700
KKLHDYTVLP EDLKTQWAKK AHGLQSELQY KADLAWMKGV GWLTEGSLNL
710 720 730 740 750
EQAKKAGQLV SEKHYRQKVD ELKFTSVTDS SQMEHAKKSQ ELQNAVAYKA
760 770 780 790 800
GNEQSVHQYT ISKDEPFFLR ARANAAQLSE TLYKSSWEKQ KAKGFELRLD
810 820 830 840 850
SLTFLTAKAK RDLASEVKYK EDYERSRGKL IGAKSAQGDS QMSHSLQMSK
860 870 880 890 900
LQSELEYKKG FEDTRSQYHV SLDMIHLAHA RQAQHLATDV GYRTASHCFT
910 920 930 940 950
ALPTDMKVEW AKKAYSLQSD NQYRADMKWM KGTGWVATGS LNVEQAKKAG
960 970 980 990 1000
ELISEKKYRQ HPDALKFTSI KDTPEMVQAR ISYTQAVDRL YREQGENLKH
1010 1020 1030 1040 1050
HYTQTVDLPE VLLAKLNAMN ISETRYKESW SRLRDGGYKL RLDALPFQAA
1060 1070 1080 1090 1100
KASSEVISDY KYKEAFERMK GQLLGSRSLE DDLSLAHSVH ATSLQSDVNY
1110 1120 1130 1140 1150
KKGFEHSKAH FHLPLDMVTL VHAKKAQTLA SNQDYRHPLP QHTSLAEDLR
1160 1170 1180 1190 1200
LRCAKKAHKL QSENLYRSDL NFMRGVPCVI PGALEIEGRK KASELISESK
1210 1220 1230 1240 1250
YRQHPGSFKY TAVTDTPNLL HAKFSNQITN ERLYKAAGED ARHQYTMTLG
1260 1270 1280 1290 1300
LPEFIRAKTN AANLSEAKYK ESWHNLRAQG YKLTIDALPF QAARASGDIA
1310 1320 1330 1340 1350
SDFLYRHEFV KERGQLIGVR SVSDDPRLRH CQRMGQLQSE NWYRKEAASS
1360 1370 1380 1390 1400
QAQYHLPMDM VPLVHARKAQ ALASDHDYRT QCHEFTALPE DLKMAWAKKA
1410 1420 1430 1440 1450
HALQSEFRYK ADLMGMKGSG WLALQSPQIE SAKKAGELIS ETKYREKPDS
1460 1470 1480 1490 1500
IKFTTVVDSP DLVHARKSYE HCNERLYRLG DADSLHRYTP IADHPDFTRA
1510 1520 1530 1540 1550
RLNAMHLSDK VYRNSWEKNR AGGYDFRLDA IPFQTARASR DIASDFRYKE
1560 1570 1580 1590 1600
AFLRDRGLQI GYRSVNDDPR MRHFLRVGRL QSDNEYRKDF AKGRSQFHSR
1610 1620 1630 1640 1650
PDQPGFLQAK RSQQLASDVL YRQPLPQHTS DPEELGLKHA RKAHQLQSDV
1660 1670 1680 1690 1700
KYKSDLNLTR GVGWTPPGSY KVEMARRAAE LANRRGLGIQ GASVETEAVE
1710 1720
LGDHRSRGVN PDASEILHIN RKKTLLM
Length:1,727
Mass (Da):196,300
Last modified:April 20, 2010 - v1
Checksum:i0F35C3D27B7E626A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06011096 Genomic DNA. No translation available.
AABR06011097 Genomic DNA. No translation available.
AABR06011098 Genomic DNA. No translation available.
AABR06011099 Genomic DNA. No translation available.
RefSeqiNP_001107215.1. NM_001113743.1.
UniGeneiRn.35035.

Genome annotation databases

EnsembliENSRNOT00000038038; ENSRNOP00000030387; ENSRNOG00000016714.
GeneIDi307982.
KEGGirno:307982.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06011096 Genomic DNA. No translation available.
AABR06011097 Genomic DNA. No translation available.
AABR06011098 Genomic DNA. No translation available.
AABR06011099 Genomic DNA. No translation available.
RefSeqi NP_001107215.1. NM_001113743.1.
UniGenei Rn.35035.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000038038 ; ENSRNOP00000030387 ; ENSRNOG00000016714 .
GeneIDi 307982.
KEGGi rno:307982.

Organism-specific databases

CTDi 4892.
RGDi 1306731. Nrap.

Phylogenomic databases

GeneTreei ENSGT00530000062924.
InParanoidi D4A4K6.
OMAi FHLPMDM.
OrthoDBi EOG7GFB81.
PhylomeDBi D4A4K6.
TreeFami TF313758.

Miscellaneous databases

NextBioi 35572474.
PROi D4A4K6.

Gene expression databases

ExpressionAtlasi D4A4K6. baseline and differential.

Family and domain databases

Gene3Di 2.10.110.10. 1 hit.
InterProi IPR013998. Nebulin.
IPR000900. Nebulin_repeat.
IPR001781. Znf_LIM.
[Graphical view ]
Pfami PF00412. LIM. 1 hit.
PF00880. Nebulin. 16 hits.
[Graphical view ]
PRINTSi PR00510. NEBULIN.
SMARTi SM00132. LIM. 1 hit.
SM00227. NEBU. 42 hits.
[Graphical view ]
PROSITEi PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS51216. NEBULIN. 41 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A4K6_RAT
AccessioniPrimary (citable) accession number: D4A4K6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3