Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D4A4K6 (D4A4K6_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length1727 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 LIM zinc-binding domain. RuleBase RU000350

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000030387

Sequences

Sequence LengthMass (Da)Tools
D4A4K6 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 0F35C3D27B7E626A

FASTA1,727196,300
        10         20         30         40         50         60 
MNMQACSRCG YGVYPAEKVS CIDQTWHKAC FHCEVCKMML SVNNFVSHQK KPYCHAHNPK 

        70         80         90        100        110        120 
NNTFTSVYRT PLNLTLKNSV AAMGGTDGKE DGEQFKSVLH WDMKSKAGAG AASRLMNERD 

       130        140        150        160        170        180 
YWPGYGEGNT WCPGALPDPE IVRMVEARQS LREGYTEDGE QPQGKGSFPA MITPAYQRAK 

       190        200        210        220        230        240 
AANQLASQVQ YKRGHDERVS TFTPVADTPE LLRANAGGQL QNDVRYTEDG GQQRGKGSFP 

       250        260        270        280        290        300 
AMITPAYQIA KRAAELASDV RYHQQYHREM KGVASPVGAE GTMTKDSIDR CGQTYSEECE 

       310        320        330        340        350        360 
EHRGKGSFPA MITPAYQNAK KANELASDIK YRQDFHKMKG AAHFHSLAAQ DNLVLQRAQN 

       370        380        390        400        410        420 
VSKLVSEVEY KKGLENSKGH SINYCETPQF RNVSKISKFT SDNKYKENYQ THLRGHYEGV 

       430        440        450        460        470        480 
GMDRRMLHAL KVGSLASNVA YKADYKHDVV DYNYPATATP FYQTTMKLAP LKDVNYRQNI 

       490        500        510        520        530        540 
DRLKFSSVTN TPQIVQAKIN AQQLSHVNYR ADYERNKLNY TLPQDAPQML KAKANAQLFS 

       550        560        570        580        590        600 
EVKYKEGWQK TKGKGFEMKL DAMSLLAAKA SGELASSIKY KEEYEKTKGR VLGTTDSKLL 

       610        620        630        640        650        660 
HSLQVAKMSS EVEYKKGFEE SKTHFHLPMD MVNLRHAKKA QALASDLDYR KKLHDYTVLP 

       670        680        690        700        710        720 
EDLKTQWAKK AHGLQSELQY KADLAWMKGV GWLTEGSLNL EQAKKAGQLV SEKHYRQKVD 

       730        740        750        760        770        780 
ELKFTSVTDS SQMEHAKKSQ ELQNAVAYKA GNEQSVHQYT ISKDEPFFLR ARANAAQLSE 

       790        800        810        820        830        840 
TLYKSSWEKQ KAKGFELRLD SLTFLTAKAK RDLASEVKYK EDYERSRGKL IGAKSAQGDS 

       850        860        870        880        890        900 
QMSHSLQMSK LQSELEYKKG FEDTRSQYHV SLDMIHLAHA RQAQHLATDV GYRTASHCFT 

       910        920        930        940        950        960 
ALPTDMKVEW AKKAYSLQSD NQYRADMKWM KGTGWVATGS LNVEQAKKAG ELISEKKYRQ 

       970        980        990       1000       1010       1020 
HPDALKFTSI KDTPEMVQAR ISYTQAVDRL YREQGENLKH HYTQTVDLPE VLLAKLNAMN 

      1030       1040       1050       1060       1070       1080 
ISETRYKESW SRLRDGGYKL RLDALPFQAA KASSEVISDY KYKEAFERMK GQLLGSRSLE 

      1090       1100       1110       1120       1130       1140 
DDLSLAHSVH ATSLQSDVNY KKGFEHSKAH FHLPLDMVTL VHAKKAQTLA SNQDYRHPLP 

      1150       1160       1170       1180       1190       1200 
QHTSLAEDLR LRCAKKAHKL QSENLYRSDL NFMRGVPCVI PGALEIEGRK KASELISESK 

      1210       1220       1230       1240       1250       1260 
YRQHPGSFKY TAVTDTPNLL HAKFSNQITN ERLYKAAGED ARHQYTMTLG LPEFIRAKTN 

      1270       1280       1290       1300       1310       1320 
AANLSEAKYK ESWHNLRAQG YKLTIDALPF QAARASGDIA SDFLYRHEFV KERGQLIGVR 

      1330       1340       1350       1360       1370       1380 
SVSDDPRLRH CQRMGQLQSE NWYRKEAASS QAQYHLPMDM VPLVHARKAQ ALASDHDYRT 

      1390       1400       1410       1420       1430       1440 
QCHEFTALPE DLKMAWAKKA HALQSEFRYK ADLMGMKGSG WLALQSPQIE SAKKAGELIS 

      1450       1460       1470       1480       1490       1500 
ETKYREKPDS IKFTTVVDSP DLVHARKSYE HCNERLYRLG DADSLHRYTP IADHPDFTRA 

      1510       1520       1530       1540       1550       1560 
RLNAMHLSDK VYRNSWEKNR AGGYDFRLDA IPFQTARASR DIASDFRYKE AFLRDRGLQI 

      1570       1580       1590       1600       1610       1620 
GYRSVNDDPR MRHFLRVGRL QSDNEYRKDF AKGRSQFHSR PDQPGFLQAK RSQQLASDVL 

      1630       1640       1650       1660       1670       1680 
YRQPLPQHTS DPEELGLKHA RKAHQLQSDV KYKSDLNLTR GVGWTPPGSY KVEMARRAAE 

      1690       1700       1710       1720 
LANRRGLGIQ GASVETEAVE LGDHRSRGVN PDASEILHIN RKKTLLM 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000030387.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000030387.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06011096 Genomic DNA. No translation available.
AABR06011097 Genomic DNA. No translation available.
AABR06011098 Genomic DNA. No translation available.
AABR06011099 Genomic DNA. No translation available.
RefSeqNP_001107215.1. NM_001113743.1.
UniGeneRn.35035.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000038038; ENSRNOP00000030387; ENSRNOG00000016714.
GeneID307982.
KEGGrno:307982.

Organism-specific databases

CTD4892.
RGD1306731. Nrap.

Phylogenomic databases

GeneTreeENSGT00530000062924.
OMAFHLPMDM.
OrthoDBEOG7GFB81.
PhylomeDBD4A4K6.
TreeFamTF313758.

Family and domain databases

Gene3D2.10.110.10. 1 hit.
InterProIPR013998. Nebulin.
IPR000900. Nebulin_repeat.
IPR001781. Znf_LIM.
[Graphical view]
PfamPF00412. LIM. 1 hit.
PF00880. Nebulin. 16 hits.
[Graphical view]
PRINTSPR00510. NEBULIN.
SMARTSM00132. LIM. 1 hit.
SM00227. NEBU. 42 hits.
[Graphical view]
PROSITEPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS51216. NEBULIN. 41 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio35572474.
PROD4A4K6.

Entry information

Entry nameD4A4K6_RAT
AccessionPrimary (citable) accession number: D4A4K6
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)