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D4A4K6

- D4A4K6_RAT

UniProt

D4A4K6 - D4A4K6_RAT

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Protein
Submitted name:

Protein Nrap

Gene
Nrap
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Protein NrapImported
Gene namesi
Name:NrapImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 1

Organism-specific databases

RGDi1306731. Nrap.

Subcellular locationi

GO - Cellular componenti

  1. fascia adherens Source: Ensembl
  2. muscle tendon junction Source: Ensembl
  3. myofibril Source: Ensembl
Complete GO annotation...

Family & Domainsi

Sequence similaritiesi

Contains 1 LIM zinc-binding domain.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotationSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00530000062924.
OMAiFHLPMDM.
OrthoDBiEOG7GFB81.
PhylomeDBiD4A4K6.
TreeFamiTF313758.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR013998. Nebulin.
IPR000900. Nebulin_repeat.
IPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 1 hit.
PF00880. Nebulin. 16 hits.
[Graphical view]
PRINTSiPR00510. NEBULIN.
SMARTiSM00132. LIM. 1 hit.
SM00227. NEBU. 42 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS51216. NEBULIN. 41 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A4K6-1 [UniParc]FASTAAdd to Basket

« Hide

MNMQACSRCG YGVYPAEKVS CIDQTWHKAC FHCEVCKMML SVNNFVSHQK     50
KPYCHAHNPK NNTFTSVYRT PLNLTLKNSV AAMGGTDGKE DGEQFKSVLH 100
WDMKSKAGAG AASRLMNERD YWPGYGEGNT WCPGALPDPE IVRMVEARQS 150
LREGYTEDGE QPQGKGSFPA MITPAYQRAK AANQLASQVQ YKRGHDERVS 200
TFTPVADTPE LLRANAGGQL QNDVRYTEDG GQQRGKGSFP AMITPAYQIA 250
KRAAELASDV RYHQQYHREM KGVASPVGAE GTMTKDSIDR CGQTYSEECE 300
EHRGKGSFPA MITPAYQNAK KANELASDIK YRQDFHKMKG AAHFHSLAAQ 350
DNLVLQRAQN VSKLVSEVEY KKGLENSKGH SINYCETPQF RNVSKISKFT 400
SDNKYKENYQ THLRGHYEGV GMDRRMLHAL KVGSLASNVA YKADYKHDVV 450
DYNYPATATP FYQTTMKLAP LKDVNYRQNI DRLKFSSVTN TPQIVQAKIN 500
AQQLSHVNYR ADYERNKLNY TLPQDAPQML KAKANAQLFS EVKYKEGWQK 550
TKGKGFEMKL DAMSLLAAKA SGELASSIKY KEEYEKTKGR VLGTTDSKLL 600
HSLQVAKMSS EVEYKKGFEE SKTHFHLPMD MVNLRHAKKA QALASDLDYR 650
KKLHDYTVLP EDLKTQWAKK AHGLQSELQY KADLAWMKGV GWLTEGSLNL 700
EQAKKAGQLV SEKHYRQKVD ELKFTSVTDS SQMEHAKKSQ ELQNAVAYKA 750
GNEQSVHQYT ISKDEPFFLR ARANAAQLSE TLYKSSWEKQ KAKGFELRLD 800
SLTFLTAKAK RDLASEVKYK EDYERSRGKL IGAKSAQGDS QMSHSLQMSK 850
LQSELEYKKG FEDTRSQYHV SLDMIHLAHA RQAQHLATDV GYRTASHCFT 900
ALPTDMKVEW AKKAYSLQSD NQYRADMKWM KGTGWVATGS LNVEQAKKAG 950
ELISEKKYRQ HPDALKFTSI KDTPEMVQAR ISYTQAVDRL YREQGENLKH 1000
HYTQTVDLPE VLLAKLNAMN ISETRYKESW SRLRDGGYKL RLDALPFQAA 1050
KASSEVISDY KYKEAFERMK GQLLGSRSLE DDLSLAHSVH ATSLQSDVNY 1100
KKGFEHSKAH FHLPLDMVTL VHAKKAQTLA SNQDYRHPLP QHTSLAEDLR 1150
LRCAKKAHKL QSENLYRSDL NFMRGVPCVI PGALEIEGRK KASELISESK 1200
YRQHPGSFKY TAVTDTPNLL HAKFSNQITN ERLYKAAGED ARHQYTMTLG 1250
LPEFIRAKTN AANLSEAKYK ESWHNLRAQG YKLTIDALPF QAARASGDIA 1300
SDFLYRHEFV KERGQLIGVR SVSDDPRLRH CQRMGQLQSE NWYRKEAASS 1350
QAQYHLPMDM VPLVHARKAQ ALASDHDYRT QCHEFTALPE DLKMAWAKKA 1400
HALQSEFRYK ADLMGMKGSG WLALQSPQIE SAKKAGELIS ETKYREKPDS 1450
IKFTTVVDSP DLVHARKSYE HCNERLYRLG DADSLHRYTP IADHPDFTRA 1500
RLNAMHLSDK VYRNSWEKNR AGGYDFRLDA IPFQTARASR DIASDFRYKE 1550
AFLRDRGLQI GYRSVNDDPR MRHFLRVGRL QSDNEYRKDF AKGRSQFHSR 1600
PDQPGFLQAK RSQQLASDVL YRQPLPQHTS DPEELGLKHA RKAHQLQSDV 1650
KYKSDLNLTR GVGWTPPGSY KVEMARRAAE LANRRGLGIQ GASVETEAVE 1700
LGDHRSRGVN PDASEILHIN RKKTLLM 1727
Length:1,727
Mass (Da):196,300
Last modified:April 20, 2010 - v1
Checksum:i0F35C3D27B7E626A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06011096 Genomic DNA. No translation available.
AABR06011097 Genomic DNA. No translation available.
AABR06011098 Genomic DNA. No translation available.
AABR06011099 Genomic DNA. No translation available.
RefSeqiNP_001107215.1. NM_001113743.1.
UniGeneiRn.35035.

Genome annotation databases

EnsembliENSRNOT00000038038; ENSRNOP00000030387; ENSRNOG00000016714.
GeneIDi307982.
KEGGirno:307982.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06011096 Genomic DNA. No translation available.
AABR06011097 Genomic DNA. No translation available.
AABR06011098 Genomic DNA. No translation available.
AABR06011099 Genomic DNA. No translation available.
RefSeqi NP_001107215.1. NM_001113743.1.
UniGenei Rn.35035.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000038038 ; ENSRNOP00000030387 ; ENSRNOG00000016714 .
GeneIDi 307982.
KEGGi rno:307982.

Organism-specific databases

CTDi 4892.
RGDi 1306731. Nrap.

Phylogenomic databases

GeneTreei ENSGT00530000062924.
OMAi FHLPMDM.
OrthoDBi EOG7GFB81.
PhylomeDBi D4A4K6.
TreeFami TF313758.

Miscellaneous databases

NextBioi 35572474.
PROi D4A4K6.

Family and domain databases

Gene3Di 2.10.110.10. 1 hit.
InterProi IPR013998. Nebulin.
IPR000900. Nebulin_repeat.
IPR001781. Znf_LIM.
[Graphical view ]
Pfami PF00412. LIM. 1 hit.
PF00880. Nebulin. 16 hits.
[Graphical view ]
PRINTSi PR00510. NEBULIN.
SMARTi SM00132. LIM. 1 hit.
SM00227. NEBU. 42 hits.
[Graphical view ]
PROSITEi PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS51216. NEBULIN. 41 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A4K6_RAT
AccessioniPrimary (citable) accession number: D4A4K6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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