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Protein
Submitted name:

THUMP domain-containing 2

Gene

Thumpd2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
THUMP domain-containing 2Imported
Gene namesi
Name:Thumpd2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 6

Organism-specific databases

RGDi1306878. Thumpd2.

PTM / Processingi

Proteomic databases

PaxDbiD4A475.

Expressioni

Gene expression databases

BgeeiENSRNOG00000008291.
ExpressionAtlasiD4A475. baseline.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011000.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini172 – 266THUMPInterPro annotationAdd BLAST95

Phylogenomic databases

eggNOGiENOG410KCNV. Eukaryota.
COG1041. LUCA.
GeneTreeiENSGT00530000063557.
InParanoidiD4A475.
OMAiWKADLRN.
OrthoDBiEOG091G1D46.
TreeFamiTF313093.

Family and domain databases

InterProiView protein in InterPro
IPR000241. RNA_methylase_dom.
IPR029063. SAM-dependent_MTases.
IPR004114. THUMP_dom.
PfamiView protein in Pfam
PF01170. UPF0020. 1 hit.
SUPFAMiSSF53335. SSF53335. 1 hit.
PROSITEiView protein in PROSITE
PS51165. THUMP. 1 hit.

Sequencei

Sequence statusi: Complete.

D4A475-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAGADPGS EPAGGAQFFC TAGRGLEPFL MREVRARLEA TQVEYISGKV
60 70 80 90 100
FFTTCSDLPS MKKLKSAERL FLLIKKQLPI TVSSLHRGRL LNEMQRFIND
110 120 130 140 150
DPGSWLKAIS LWRKLLDHDT NGEKVSQGDA NPLKRKAGEN DSITPKKLKL
160 170 180 190 200
EEMQVVDKSH GESQQDQPQG PLEQGETLAR TDELQEQRLH RASETAAHAQ
210 220 230 240 250
SPEDLTFRIS CRCSGSIRKV VTGQEAGRVA GLALMRQFGW KADLRKPDLE
260 270 280 290 300
IFMHLSDAYS VVGIPLLRVP LASRTYLQTA GLRSTIAWAM ASIAEIKAGA
310 320 330 340 350
LVLDPMCGLG TILVEAAEEW PDVFYVGADV SDSQLLGACD NLKAAGLAHR
360 370 380 390 400
IELLKGSVAD LPLPAQSVDV IISDIPFGKK FKLGKDIKSI LQEMERVLHV
410 420 430 440 450
DGVMILLLSE DHHRRLTDCG GSSMPPTSQG NVSDPEMKML LNPDRTGAPD
460 470 480 490 500
TASPSQKASS LQSLGRPLPC GSLVPVESFK VSLGKTDAFI CKYKKASASG
510 520 530 540
LSPSRCHEPG AHPEVAAMQG SPGLQDSICP GAPSAQPLPV GMAKNTAVR
Length:549
Mass (Da):59,195
Last modified:April 3, 2013 - v2
Checksum:i08ED3BC7C7EF2652
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07062698 Genomic DNA. No translation available.
RefSeqiNP_001156978.1. NM_001163506.1.
UniGeneiRn.204569.

Genome annotation databases

EnsembliENSRNOT00000011000; ENSRNOP00000011000; ENSRNOG00000008291.
GeneIDi313851.

Similar proteinsi

Entry informationi

Entry nameiD4A475_RAT
AccessioniPrimary (citable) accession number: D4A475
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: July 5, 2017
This is version 51 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported