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D4A3T6 (D4A3T6_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length638 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains GPS domain. SAAS SAAS000832

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000035606

Sequences

Sequence LengthMass (Da)Tools
D4A3T6 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 8613B71433D5A694

FASTA63870,830
        10         20         30         40         50         60 
MISARWLYCL VLLLATESCR LFCQAASKSK ENVMPRPHDV CDGVCKNNAS PCFQSCPPNS 

        70         80         90        100        110        120 
EGNMKFACKA KRWHKVTETC HTLNAHSIFE EDKELYSVQS SESTIRTHMF NSGLKTITDT 

       130        140        150        160        170        180 
LMEKCPKDLS CVIRGIEKSP RIPGNIAVVV QLLHNISTTL TKGVDEEKMQ SYSAMANHIL 

       190        200        210        220        230        240 
NSKSISNWTF IQDRNSSCVL LQSINSFASN LFMKGHLINI SHVFIHTLGT VVPRNSLGKN 

       250        260        270        280        290        300 
FTFSMRVNDT SDKVTGRILL TTEELQKVPS AFQVISIAFP TLGAILEASL LENMTVNGLV 

       310        320        330        340        350        360 
LSVILPKELK NISLIFEKIR KSGERKSQCV GWHSLESRWD RRACKMIQEN SRQAICRCQP 

       370        380        390        400        410        420 
NKFFTSFSIL MSPNTVESPV LTYITYIGLG ISICSLIICL AIEALVWSQV TKTEISYLRH 

       430        440        450        460        470        480 
LCIANIAVTL LMADVWFIVA SFLSGPIVHH NGCVTATFFV HFFYLSVFFW MLAKALLILY 

       490        500        510        520        530        540 
GILIVFHTLP KSCLVASLFT VGYGCPLVIA VITLAVTEPG KGYLRPEACW LNWDMTKALL 

       550        560        570        580        590        600 
AFVVPALAIV VVNLITVTLV IIKTQRAAVG SSMFQEVRAI VRICKNIAIL TPLLGLTWGF 

       610        620        630 
GIATVVAGHS LAFHIIFSLL NALQVSPDAM IESEWRGC 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000035606.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000035606.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06058952 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000033075; ENSRNOP00000035606; ENSRNOG00000025603.
UCSCRGD:1306718. rat.

Organism-specific databases

RGD1306718. Gpr111.

Phylogenomic databases

GeneTreeENSGT00610000085899.
OMAILIVFHT.
OrthoDBEOG7GJ6CK.
PhylomeDBD4A3T6.
TreeFamTF316380.

Family and domain databases

InterProIPR017981. GPCR_2-like.
IPR000832. GPCR_2_secretin-like.
IPR000203. GPS.
[Graphical view]
PfamPF00002. 7tm_2. 1 hit.
PF01825. GPS. 1 hit.
[Graphical view]
PRINTSPR00249. GPCRSECRETIN.
SMARTSM00303. GPS. 1 hit.
[Graphical view]
PROSITEPS50261. G_PROTEIN_RECEP_F2_4. 1 hit.
PS50221. GPS. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35572305.

Entry information

Entry nameD4A3T6_RAT
AccessionPrimary (citable) accession number: D4A3T6
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)