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D4A3J2

- D4A3J2_RAT

UniProt

D4A3J2 - D4A3J2_RAT

Protein
Submitted name:

Protein Atg13

Gene

Atg13

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein kinase binding Source: RefGenome

    GO - Biological processi

    1. autophagic vacuole assembly Source: RefGenome

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Atg13Imported
    Gene namesi
    Name:Atg13Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 3

    Organism-specific databases

    RGDi1310685. Atg13.

    Subcellular locationi

    GO - Cellular componenti

    1. ATG1/UKL1 signaling complex Source: RefGenome
    2. cytosol Source: RefGenome
    3. pre-autophagosomal structure Source: RefGenome
    4. ULK1-ATG13-FIP200 complex Source: RefGenome

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000007055.
    OMAiMCVEISL.
    OrthoDBiEOG744T8P.
    TreeFamiTF321599.

    Family and domain databases

    InterProiIPR018731. Autophagy-rel_p13.
    [Graphical view]
    PfamiPF10033. ATG13. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A3J2-1 [UniParc]FASTAAdd to Basket

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    METDLSSQDR KDLDKFIKFF ALKTVQVIVQ ARLGEKICTR SSSSPTGSDW    50
    FNLAIKDIPE VTHEAKKALS GQLPAVGRSM CVEISLKTSE GDSMELEIWC 100
    LEMNEKCDKE IKVSYTVYNR LSLLLKSLLA ITRVTPAYRL SRKQGHEYVI 150
    LYRIYFGEVQ LNGLGEGFQT VRVGTVGTPV GTLTLSCAYR INLAFMSTRQ 200
    FERTPPIMGI IIDHFVDRPY PSSSPMHPCN YRTAEDAGVA YPSVEDSQEV 250
    CTTSFSTSPP SQLSSSRLSY QPAVLGLGSA DLAYPVVFTA GLNTTHAHQL 300
    MVPGKEGGVP LAPNHPAHGA QADQERLVVH MPSDGTHCAA TPSSSEDTET 350
    VSNSSEGRAS PHDILETIFV RKVGAFVNKP INQVTLTSLD IPFAMFAPKN 400
    LELEDADPMV NPPDSPETTS PLHGSLHSEG SSGGSSGNAH DDFVMIDFKP 450
    AFSKDDILPM DLGTFYRNFN PPQLSSLSID FGAQSMAEDL DSLPEKLAVH 500
    EKNVREFDAF VETLQ 515
    Length:515
    Mass (Da):56,317
    Last modified:April 3, 2013 - v2
    Checksum:i3147364D9A87A5FF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06024740 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000023237; ENSRNOP00000023237; ENSRNOG00000016984.
    UCSCiRGD:1310685. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06024740 Genomic DNA. No translation available.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000023237 ; ENSRNOP00000023237 ; ENSRNOG00000016984 .
    UCSCi RGD:1310685. rat.

    Organism-specific databases

    RGDi 1310685. Atg13.

    Phylogenomic databases

    GeneTreei ENSGT00390000007055.
    OMAi MCVEISL.
    OrthoDBi EOG744T8P.
    TreeFami TF321599.

    Miscellaneous databases

    NextBioi 33733484.

    Family and domain databases

    InterProi IPR018731. Autophagy-rel_p13.
    [Graphical view ]
    Pfami PF10033. ATG13. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A3J2_RAT
    AccessioniPrimary (citable) accession number: D4A3J2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 32 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3