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D4A3J2

- D4A3J2_RAT

UniProt

D4A3J2 - D4A3J2_RAT

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Protein

Autophagy-related protein 13

Gene

Atg13

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. protein kinase binding Source: RefGenome

GO - Biological processi

  1. autophagic vacuole assembly Source: RefGenome
Complete GO annotation...

Keywords - Biological processi

AutophagyUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Autophagy-related protein 13UniRule annotation
Gene namesi
Name:Atg13Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 3

Organism-specific databases

RGDi1310685. Atg13.

Subcellular locationi

GO - Cellular componenti

  1. ATG1/UKL1 signaling complex Source: RefGenome
  2. cytosol Source: RefGenome
  3. pre-autophagosomal structure Source: RefGenome
  4. ULK1-ATG13-FIP200 complex Source: RefGenome
Complete GO annotation...

Expressioni

Gene expression databases

ExpressionAtlasiD4A3J2. baseline.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATG13 metazoan family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000007055.
InParanoidiD4A3J2.
OMAiMCVEISL.
OrthoDBiEOG744T8P.
TreeFamiTF321599.

Family and domain databases

InterProiIPR018731. Autophagy-rel_p13.
[Graphical view]
PfamiPF10033. ATG13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A3J2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
METDLSSQDR KDLDKFIKFF ALKTVQVIVQ ARLGEKICTR SSSSPTGSDW
60 70 80 90 100
FNLAIKDIPE VTHEAKKALS GQLPAVGRSM CVEISLKTSE GDSMELEIWC
110 120 130 140 150
LEMNEKCDKE IKVSYTVYNR LSLLLKSLLA ITRVTPAYRL SRKQGHEYVI
160 170 180 190 200
LYRIYFGEVQ LNGLGEGFQT VRVGTVGTPV GTLTLSCAYR INLAFMSTRQ
210 220 230 240 250
FERTPPIMGI IIDHFVDRPY PSSSPMHPCN YRTAEDAGVA YPSVEDSQEV
260 270 280 290 300
CTTSFSTSPP SQLSSSRLSY QPAVLGLGSA DLAYPVVFTA GLNTTHAHQL
310 320 330 340 350
MVPGKEGGVP LAPNHPAHGA QADQERLVVH MPSDGTHCAA TPSSSEDTET
360 370 380 390 400
VSNSSEGRAS PHDILETIFV RKVGAFVNKP INQVTLTSLD IPFAMFAPKN
410 420 430 440 450
LELEDADPMV NPPDSPETTS PLHGSLHSEG SSGGSSGNAH DDFVMIDFKP
460 470 480 490 500
AFSKDDILPM DLGTFYRNFN PPQLSSLSID FGAQSMAEDL DSLPEKLAVH
510
EKNVREFDAF VETLQ
Length:515
Mass (Da):56,317
Last modified:April 3, 2013 - v2
Checksum:i3147364D9A87A5FF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06024740 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000023237; ENSRNOP00000023237; ENSRNOG00000016984.
UCSCiRGD:1310685. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06024740 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000023237 ; ENSRNOP00000023237 ; ENSRNOG00000016984 .
UCSCi RGD:1310685. rat.

Organism-specific databases

RGDi 1310685. Atg13.

Phylogenomic databases

GeneTreei ENSGT00390000007055.
InParanoidi D4A3J2.
OMAi MCVEISL.
OrthoDBi EOG744T8P.
TreeFami TF321599.

Miscellaneous databases

NextBioi 33733484.

Gene expression databases

ExpressionAtlasi D4A3J2. baseline.

Family and domain databases

InterProi IPR018731. Autophagy-rel_p13.
[Graphical view ]
Pfami PF10033. ATG13. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A3J2_RAT
AccessioniPrimary (citable) accession number: D4A3J2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: October 29, 2014
This is version 33 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3