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Protein
Submitted name:

Peroxisomal biogenesis factor 13

Gene

Pex13

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Peroxisomal biogenesis factor 13Imported
Submitted name:
Peroxisomal biogenesis factor 13 (Predicted)Imported
Gene namesi
Name:Pex13Imported
Synonyms:Pex13_predictedImported
ORF Names:rCG_23261Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 14

Organism-specific databases

RGDi1310682. Pex13.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000054896.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000007854.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini272 – 336SH3InterPro annotationAdd BLAST65

Keywords - Domaini

SH3 domainPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG3875. Eukaryota.
ENOG410XRU7. LUCA.
GeneTreeiENSGT00390000016883.
KOiK13344.
OMAiDSTFFAL.
OrthoDBiEOG091G0LMX.

Family and domain databases

InterProiView protein in InterPro
IPR007223. Peroxin-13_N.
IPR035463. Pex13.
IPR036028. SH3-like_dom.
IPR001452. SH3_domain.
PANTHERiPTHR19332. PTHR19332. 1 hit.
PfamiView protein in Pfam
PF04088. Peroxin-13_N. 1 hit.
PF14604. SH3_9. 1 hit.
PRINTSiPR00452. SH3DOMAIN.
SMARTiView protein in SMART
SM00326. SH3. 1 hit.
SUPFAMiSSF50044. SSF50044. 1 hit.
PROSITEiView protein in PROSITE
PS50002. SH3. 1 hit.

Sequencei

Sequence statusi: Complete.

D4A2Y9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASQPPPPPK PWETRRIPGA GPGPGPGPTF QSADLGPTLL TRPGQPTLTR
60 70 80 90 100
VPPPILPRPS QQTGGNNVNT FRPAYSSFSS GYGAYGNAFY GSYSPYSYGY
110 120 130 140 150
NGLGFNRLRV DDLPPSRFVQ QAEESSRGAF QSIESIVHAF ASVSMMMDAT
160 170 180 190 200
FSAVYNSFRA VLDVANHFSR LKIHFTKVFS AFALVRTIRY LYRRLQWMMG
210 220 230 240 250
LRRGSENEDL WAESEGTVAC LGAEDQANNS AKSWPIFLFF AVILGGPYLI
260 270 280 290 300
WKLLSTHSDE VTDSTNWANG EDDHVVARAE YDFAAVSDEE ISFRAGDMLN
310 320 330 340 350
LALKEQQPKV RGWLLASLDG QTTGLIPANY VKILGKRRGR KTVESSTMPK
360 370 380 390 400
QQQSFTNPTS VKGVTTTNSL EEQEAAFESV FVETNKVAGT PDSTGKNGDK

QDL
Length:403
Mass (Da):44,264
Last modified:April 20, 2010 - v1
Checksum:iA133568CDB789685
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07016635 Genomic DNA. No translation available.
CH473996 Genomic DNA. Translation: EDL97993.1.
RefSeqiNP_001100712.1. NM_001107242.2.
UniGeneiRn.144057.

Genome annotation databases

EnsembliENSRNOT00000081405; ENSRNOP00000068751; ENSRNOG00000054896.
GeneIDi305581.
KEGGirno:305581.
UCSCiRGD:1310682. rat.

Similar proteinsi

Entry informationi

Entry nameiD4A2Y9_RAT
AccessioniPrimary (citable) accession number: D4A2Y9
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 25, 2017
This is version 66 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported