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Protein
Submitted name:

Receptor (chemosensory) transporter protein 4

Gene

Rtp4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Receptor (chemosensory) transporter protein 4Imported
Submitted name:
Receptor transporter protein 4 (Predicted)Imported
Gene namesi
Name:Rtp4Imported
Synonyms:Rtp4_predictedImported
ORF Names:rCG_36618Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 11

Organism-specific databases

RGDi1306974. Rtp4.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei224 – 244HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000028895.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000045711.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini50 – 163zf-3CxxCInterPro annotationAdd BLAST114

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IH22. Eukaryota.
ENOG4111X4F. LUCA.
GeneTreeiENSGT00530000063222.
OMAiRCQKCSW.
OrthoDBiEOG091G0DS4.
TreeFamiTF333246.

Family and domain databases

InterProiView protein in InterPro
IPR026096. R-trans_p.
IPR026690. RTP4.
IPR027377. Znf-3CxxC.
PANTHERiPTHR14402. PTHR14402. 1 hit.
PTHR14402:SF23. PTHR14402:SF23. 1 hit.
PfamiView protein in Pfam
PF13695. zf-3CxxC. 1 hit.
SMARTiView protein in SMART
SM01328. zf-3CxxC. 1 hit.

Sequencei

Sequence statusi: Complete.

D4A238-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLFSDDFSTW EQRFQELIRE EKPGAKWTLH LDKNIVPDGA ALGWRQQQQT
60 70 80 90 100
VVGRFQCSRC YRSWTSAQVK IVCHMFQDAG KTQGRVLMRI FGQRCQKCFG
110 120 130 140 150
SQFESPEFST ESIERMLNNL VNYILQRYYG HRKIASILNA SLDEKVLLDG
160 170 180 190 200
PHDTLNCEAC SLHPHGRCAV AQRVRPPRSP SPSPSPSPKS HSSSPSRSHP
210 220 230 240
PLLQTEITGF RNRPFQEVRE PGEAASPLLV ILSVAALALI GFFIR
Length:245
Mass (Da):27,751
Last modified:April 20, 2010 - v1
Checksum:i5122A290D0E9F012
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07034598 Genomic DNA. No translation available.
CH473999 Genomic DNA. Translation: EDL78092.1.
RefSeqiNP_001101791.1. NM_001108321.1.
XP_006248583.1. XM_006248521.3.
UniGeneiRn.4244.

Genome annotation databases

EnsembliENSRNOT00000043660; ENSRNOP00000045711; ENSRNOG00000028895.
GeneIDi360733.
KEGGirno:360733.
UCSCiRGD:1306974. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07034598 Genomic DNA. No translation available.
CH473999 Genomic DNA. Translation: EDL78092.1.
RefSeqiNP_001101791.1. NM_001108321.1.
XP_006248583.1. XM_006248521.3.
UniGeneiRn.4244.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000045711.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000043660; ENSRNOP00000045711; ENSRNOG00000028895.
GeneIDi360733.
KEGGirno:360733.
UCSCiRGD:1306974. rat.

Organism-specific databases

CTDi64108.
RGDi1306974. Rtp4.

Phylogenomic databases

eggNOGiENOG410IH22. Eukaryota.
ENOG4111X4F. LUCA.
GeneTreeiENSGT00530000063222.
OMAiRCQKCSW.
OrthoDBiEOG091G0DS4.
TreeFamiTF333246.

Gene expression databases

BgeeiENSRNOG00000028895.

Family and domain databases

InterProiView protein in InterPro
IPR026096. R-trans_p.
IPR026690. RTP4.
IPR027377. Znf-3CxxC.
PANTHERiPTHR14402. PTHR14402. 1 hit.
PTHR14402:SF23. PTHR14402:SF23. 1 hit.
PfamiView protein in Pfam
PF13695. zf-3CxxC. 1 hit.
SMARTiView protein in SMART
SM01328. zf-3CxxC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD4A238_RAT
AccessioniPrimary (citable) accession number: D4A238
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: June 7, 2017
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.