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D4A1F4

- D4A1F4_RAT

UniProt

D4A1F4 - D4A1F4_RAT

Protein
Submitted name:

Protein Ipp

Gene

Ipp

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein IppImported
    Gene namesi
    Name:IppImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 5

    Organism-specific databases

    RGDi1306299. Ipp.

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 BTB (POZ) domain.UniRule annotation
    Contains BTB (POZ) domain.SAAS annotation
    Contains Kelch repeats.SAAS annotation

    Keywords - Domaini

    Kelch repeatSAAS annotation, RepeatSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00740000115087.
    KOiK13956.
    OMAiCEMQGLI.
    OrthoDBiEOG7KQ214.
    PhylomeDBiD4A1F4.
    TreeFamiTF329218.

    Family and domain databases

    Gene3Di2.130.10.80. 1 hit.
    3.30.710.10. 1 hit.
    InterProiIPR011705. BACK.
    IPR000210. BTB/POZ-like.
    IPR011333. BTB/POZ_fold.
    IPR013069. BTB_POZ.
    IPR011043. Gal_Oxase/kelch_b-propeller.
    IPR015916. Gal_Oxidase_b-propeller.
    IPR017096. Kelch-like_gigaxonin-typ.
    IPR006652. Kelch_1.
    [Graphical view]
    PfamiPF07707. BACK. 1 hit.
    PF00651. BTB. 1 hit.
    PF01344. Kelch_1. 6 hits.
    [Graphical view]
    PIRSFiPIRSF037037. Kelch-like_protein_gigaxonin. 1 hit.
    SMARTiSM00875. BACK. 1 hit.
    SM00225. BTB. 1 hit.
    SM00612. Kelch. 6 hits.
    [Graphical view]
    SUPFAMiSSF50965. SSF50965. 1 hit.
    SSF54695. SSF54695. 1 hit.
    PROSITEiPS50097. BTB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A1F4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKEEYAKAA DSSFSSDKHA QLILAQMNKM RTGQHFCDVQ LQVGKETFQV    50
    HRLVLAASSP YFAALFTGGM KESSKDVVQI LGVEAGIFQL LLDFIYTGLV 100
    NIAVSNVQEL IVAADMLQLT EVVNLCCDFL KGQIDPQNCI GLFQFSEQIA 150
    CHDLLEFTEN YIHVHFLEVH SGEEFLALTK DQLIRILRSE ELSIEDEYQV 200
    FLAAMQWILK DLGKRRKHVV EVLDPVRFPL LPSQRLLKYI EGVSDFNLRV 250
    ALQTLLKEYC EVCKSPKENK FCSFLQTSKA RPRKKARKYL YAVGGYTRLQ 300
    GGRWSDSRAL SCVERFDTFS QYWTTVSSLH QARCGLGVAV LGGMVYAIGG 350
    EKDSMIFDCT ECYDPVTKQW TTVASMNHPR CGLGVCVCYG AIYALGGWVG 400
    AEIGDTIERF DPDENKWEVV GNMAVSRYYF GCCEMQGLIY AVGGISNEGL 450
    ELRSFEVYDP LSKRWSPLPP MGTRRAYLGV AALNDCIYAI GGWNETQDAL 500
    HTVEKYSFEE EKWIEVASMK VPRAGMCVVA VNGLLYVSGG RSSSHDFLAP 550
    GTLDSVEVYN PHSDTWTEIG NMITSRCEGG VAVL 584
    Length:584
    Mass (Da):65,291
    Last modified:April 20, 2010 - v1
    Checksum:i4DE28395A7A926CE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06039547 Genomic DNA. No translation available.
    AABR06039548 Genomic DNA. No translation available.
    RefSeqiNP_001100149.2. NM_001106679.2.
    XP_006238702.1. XM_006238640.1.
    XP_006238703.1. XM_006238641.1.
    XP_006238704.1. XM_006238642.1.
    UniGeneiRn.229516.
    Rn.47908.
    Rn.8314.

    Genome annotation databases

    EnsembliENSRNOT00000021850; ENSRNOP00000021850; ENSRNOG00000016183.
    GeneIDi298439.
    KEGGirno:298439.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06039547 Genomic DNA. No translation available.
    AABR06039548 Genomic DNA. No translation available.
    RefSeqi NP_001100149.2. NM_001106679.2.
    XP_006238702.1. XM_006238640.1.
    XP_006238703.1. XM_006238641.1.
    XP_006238704.1. XM_006238642.1.
    UniGenei Rn.229516.
    Rn.47908.
    Rn.8314.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000021850 ; ENSRNOP00000021850 ; ENSRNOG00000016183 .
    GeneIDi 298439.
    KEGGi rno:298439.

    Organism-specific databases

    CTDi 3652.
    RGDi 1306299. Ipp.

    Phylogenomic databases

    GeneTreei ENSGT00740000115087.
    KOi K13956.
    OMAi CEMQGLI.
    OrthoDBi EOG7KQ214.
    PhylomeDBi D4A1F4.
    TreeFami TF329218.

    Miscellaneous databases

    NextBioi 35571774.

    Family and domain databases

    Gene3Di 2.130.10.80. 1 hit.
    3.30.710.10. 1 hit.
    InterProi IPR011705. BACK.
    IPR000210. BTB/POZ-like.
    IPR011333. BTB/POZ_fold.
    IPR013069. BTB_POZ.
    IPR011043. Gal_Oxase/kelch_b-propeller.
    IPR015916. Gal_Oxidase_b-propeller.
    IPR017096. Kelch-like_gigaxonin-typ.
    IPR006652. Kelch_1.
    [Graphical view ]
    Pfami PF07707. BACK. 1 hit.
    PF00651. BTB. 1 hit.
    PF01344. Kelch_1. 6 hits.
    [Graphical view ]
    PIRSFi PIRSF037037. Kelch-like_protein_gigaxonin. 1 hit.
    SMARTi SM00875. BACK. 1 hit.
    SM00225. BTB. 1 hit.
    SM00612. Kelch. 6 hits.
    [Graphical view ]
    SUPFAMi SSF50965. SSF50965. 1 hit.
    SSF54695. SSF54695. 1 hit.
    PROSITEi PS50097. BTB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A1F4_RAT
    AccessioniPrimary (citable) accession number: D4A1F4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3