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D4A1F4 (D4A1F4_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length584 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 BTB (POZ) domain. RuleBase RU004401

Contains BTB (POZ) domain. SAAS SAAS006652

Contains Kelch repeats. SAAS SAAS006652

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000021850

Ontologies

Keywords
   DomainKelch repeat SAAS SAAS006652
Repeat SAAS SAAS006652
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
D4A1F4 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 4DE28395A7A926CE

FASTA58465,291
        10         20         30         40         50         60 
MSKEEYAKAA DSSFSSDKHA QLILAQMNKM RTGQHFCDVQ LQVGKETFQV HRLVLAASSP 

        70         80         90        100        110        120 
YFAALFTGGM KESSKDVVQI LGVEAGIFQL LLDFIYTGLV NIAVSNVQEL IVAADMLQLT 

       130        140        150        160        170        180 
EVVNLCCDFL KGQIDPQNCI GLFQFSEQIA CHDLLEFTEN YIHVHFLEVH SGEEFLALTK 

       190        200        210        220        230        240 
DQLIRILRSE ELSIEDEYQV FLAAMQWILK DLGKRRKHVV EVLDPVRFPL LPSQRLLKYI 

       250        260        270        280        290        300 
EGVSDFNLRV ALQTLLKEYC EVCKSPKENK FCSFLQTSKA RPRKKARKYL YAVGGYTRLQ 

       310        320        330        340        350        360 
GGRWSDSRAL SCVERFDTFS QYWTTVSSLH QARCGLGVAV LGGMVYAIGG EKDSMIFDCT 

       370        380        390        400        410        420 
ECYDPVTKQW TTVASMNHPR CGLGVCVCYG AIYALGGWVG AEIGDTIERF DPDENKWEVV 

       430        440        450        460        470        480 
GNMAVSRYYF GCCEMQGLIY AVGGISNEGL ELRSFEVYDP LSKRWSPLPP MGTRRAYLGV 

       490        500        510        520        530        540 
AALNDCIYAI GGWNETQDAL HTVEKYSFEE EKWIEVASMK VPRAGMCVVA VNGLLYVSGG 

       550        560        570        580 
RSSSHDFLAP GTLDSVEVYN PHSDTWTEIG NMITSRCEGG VAVL 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000021850.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000021850.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06039547 Genomic DNA. No translation available.
AABR06039548 Genomic DNA. No translation available.
RefSeqNP_001100149.2. NM_001106679.2.
XP_006238702.1. XM_006238640.1.
XP_006238703.1. XM_006238641.1.
XP_006238704.1. XM_006238642.1.
UniGeneRn.229516.
Rn.47908.
Rn.8314.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000021850; ENSRNOP00000021850; ENSRNOG00000016183.
GeneID298439.
KEGGrno:298439.

Organism-specific databases

CTD3652.
RGD1306299. Ipp.

Phylogenomic databases

GeneTreeENSGT00740000115087.
KOK13956.
OMACEMQGLI.
OrthoDBEOG7KQ214.
PhylomeDBD4A1F4.
TreeFamTF329218.

Family and domain databases

Gene3D2.130.10.80. 1 hit.
3.30.710.10. 1 hit.
InterProIPR011705. BACK.
IPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR011043. Gal_Oxase/kelch_b-propeller.
IPR015916. Gal_Oxidase_b-propeller.
IPR017096. Kelch-like_gigaxonin-typ.
IPR006652. Kelch_1.
[Graphical view]
PfamPF07707. BACK. 1 hit.
PF00651. BTB. 1 hit.
PF01344. Kelch_1. 6 hits.
[Graphical view]
PIRSFPIRSF037037. Kelch-like_protein_gigaxonin. 1 hit.
SMARTSM00875. BACK. 1 hit.
SM00225. BTB. 1 hit.
SM00612. Kelch. 6 hits.
[Graphical view]
SUPFAMSSF50965. SSF50965. 1 hit.
SSF54695. SSF54695. 1 hit.
PROSITEPS50097. BTB. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35571774.

Entry information

Entry nameD4A1F4_RAT
AccessionPrimary (citable) accession number: D4A1F4
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)