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Protein
Submitted name:

WD repeat domain 3

Gene

Wdr3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-6791226 Major pathway of rRNA processing in the nucleolus and cytosol

Names & Taxonomyi

Protein namesi
Submitted name:
WD repeat domain 3Imported
Submitted name:
WD repeat domain 3 (Predicted), isoform CRA_cImported
Gene namesi
Name:Wdr3Imported
Synonyms:Wdr3_predictedImported
ORF Names:rCG_52071Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1307480 Wdr3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PeptideAtlasiD4A106
PRIDEiD4A106

Expressioni

Gene expression databases

BgeeiENSRNOG00000019670

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026726

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini19 – 711WD_REPEATS_REGIONInterPro annotationAdd BLAST693
Repeati103 – 144WDPROSITE-ProRule annotationAdd BLAST42
Repeati145 – 186WDPROSITE-ProRule annotationAdd BLAST42
Repeati187 – 220WDPROSITE-ProRule annotationAdd BLAST34
Repeati410 – 450WDPROSITE-ProRule annotationAdd BLAST41
Repeati491 – 525WDPROSITE-ProRule annotationAdd BLAST35
Repeati586 – 627WDPROSITE-ProRule annotationAdd BLAST42
Repeati628 – 669WDPROSITE-ProRule annotationAdd BLAST42
Repeati670 – 702WDPROSITE-ProRule annotationAdd BLAST33

Keywords - Domaini

RepeatSAAS annotation, WD repeatPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0306 Eukaryota
ENOG410XR1C LUCA
GeneTreeiENSGT00910000144238
KOiK14556
OMAiDTMVKWW
OrthoDBiEOG091G023R
TreeFamiTF300427

Family and domain databases

Gene3Di2.130.10.10, 4 hits
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR011047 Quinoprotein_ADH-like_supfam
IPR007148 SSU_processome_Utp12
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
PfamiView protein in Pfam
PF04003 Utp12, 1 hit
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 11 hits
SUPFAMiSSF50998 SSF50998, 2 hits
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 2 hits
PS50082 WD_REPEATS_2, 8 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

D4A106-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLTKQYLRY VASAVFGLIG SQKGNIVFVT LRGEKGRYVA VPACEHVFIW
60 70 80 90 100
DLRKGEKILI LQGLKQEVTC LCPSPDGLHL AVGYEDGAIR VFSLLSGEGN
110 120 130 140 150
ITFNGHRAAV TSLKYDQLGG RLASGSKDTD VIIWDVINES GLYRLKGHKD
160 170 180 190 200
AVTQALFLRE RNLLVTSGKD TMVKWWDLDN QHCFKTMVGH RTEVWGLVLV
210 220 230 240 250
SEETRLITGA ADSELRAWDI AYLQEIDDPE EPEPKKIKEC PGIQDTPEAE
260 270 280 290 300
DRTLEADDEK SEDRILSCRK AGSLMREGRD RVVNLAVDKT GRILACHGTD
310 320 330 340 350
SVLEVFCILS KAEVQKKMDK KLKKARKKAR LNSANEEEDP ETSVSMTLQD
360 370 380 390 400
EILRVTKIKT SAKIKSFDLI HSPQGELKAV FLLQNNLVEL YSLSTSLPNP
410 420 430 440 450
QPVRTSRITI GGHRSDVRTL SFSSDNIAVL SAAAESVKIW NRSTLQCIRT
460 470 480 490 500
MPCEYALCSF FVPGDRQVVI GTKTGNMQLY DLASGNLLET IAAHDGALWS
510 520 530 540 550
MSLSPDQRGF VTGGADKAVK FWDFELVTDK NSTQKRLSVK QTRILQLDED
560 570 580 590 600
VLYVCYSPDQ RLLAVSLLDC TVKIFYVDTL KFFLSLYGHK LPVICMDISH
610 620 630 640 650
DGALIATGSA DRNVKIWGLD FGDCHRSLFA HDDSVMHLRF VPKSHLFFTA
660 670 680 690 700
GKDHKIKQWD ADKFEHIQTL EGHHQEIWCL AVSPSGDYVV SASHDKSLRL
710 720 730 740 750
WERTREPLIL EEERELQREA EYEESVAKEE QPAVPGETQG DNYFTGKKTI
760 770 780 790 800
ETVKAAERIM EAIELYREET AKMKEHRAIC RAAGKEVPLP VNPILMAHGN
810 820 830 840 850
ISPSAYVLET FKGIRSSELE EALLVLPFSY VPDILTLFNG FIQTGSDVEL
860 870 880 890 900
LCRCLFFLLR IHFGQITSNQ MLVPVIEKLK ETTISKVRQV QDVIGFNMAG
910 920 930 940
LNYLKRECEA KSEVMFFAEA TSHLEEKKRK RKNRRKMILT LT
Length:942
Mass (Da):106,073
Last modified:April 20, 2010 - v1
Checksum:iD28B6729F1A3C23F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07012693 Genomic DNA No translation available.
CH474015 Genomic DNA Translation: EDL85541.1
CH474015 Genomic DNA Translation: EDL85542.1
RefSeqiNP_001101175.1, NM_001107705.1
UniGeneiRn.12973

Genome annotation databases

EnsembliENSRNOT00000026726; ENSRNOP00000026726; ENSRNOG00000019670
GeneIDi310720
KEGGirno:310720

Similar proteinsi

Entry informationi

Entry nameiD4A106_RAT
AccessioniPrimary (citable) accession number: D4A106
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 23, 2018
This is version 71 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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