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D4A106

- D4A106_RAT

UniProt

D4A106 - D4A106_RAT

Protein
Submitted name:

Protein Wdr3

Gene

Wdr3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Wdr3Imported
    Submitted name:
    WD repeat domain 3 (Predicted), isoform CRA_cImported
    Gene namesi
    Name:Wdr3Imported
    Synonyms:Wdr3_predictedImported
    ORF Names:rCG_52071Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 2

    Organism-specific databases

    RGDi1307480. Wdr3.

    Subcellular locationi

    GO - Cellular componenti

    1. nuclear membrane Source: Ensembl
    2. nucleolus Source: Ensembl

    Family & Domainsi

    Keywords - Domaini

    RepeatUniRule annotationSAAS annotation, WD repeatUniRule annotationSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00750000117677.
    KOiK14556.
    OMAiFECGYAL.
    OrthoDBiEOG77DJ54.
    TreeFamiTF300427.

    Family and domain databases

    Gene3Di2.130.10.10. 3 hits.
    InterProiIPR020472. G-protein_beta_WD-40_rep.
    IPR011047. Quinonprotein_ADH-like_supfam.
    IPR007148. SSU_processome_Utp12.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view]
    PfamiPF04003. Utp12. 1 hit.
    PF00400. WD40. 9 hits.
    [Graphical view]
    PRINTSiPR00320. GPROTEINBRPT.
    SMARTiSM00320. WD40. 11 hits.
    [Graphical view]
    SUPFAMiSSF50998. SSF50998. 2 hits.
    PROSITEiPS00678. WD_REPEATS_1. 2 hits.
    PS50082. WD_REPEATS_2. 8 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A106-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGLTKQYLRY VASAVFGLIG SQKGNIVFVT LRGEKGRYVA VPACEHVFIW    50
    DLRKGEKILI LQGLKQEVTC LCPSPDGLHL AVGYEDGAIR VFSLLSGEGN 100
    ITFNGHRAAV TSLKYDQLGG RLASGSKDTD VIIWDVINES GLYRLKGHKD 150
    AVTQALFLRE RNLLVTSGKD TMVKWWDLDN QHCFKTMVGH RTEVWGLVLV 200
    SEETRLITGA ADSELRAWDI AYLQEIDDPE EPEPKKIKEC PGIQDTPEAE 250
    DRTLEADDEK SEDRILSCRK AGSLMREGRD RVVNLAVDKT GRILACHGTD 300
    SVLEVFCILS KAEVQKKMDK KLKKARKKAR LNSANEEEDP ETSVSMTLQD 350
    EILRVTKIKT SAKIKSFDLI HSPQGELKAV FLLQNNLVEL YSLSTSLPNP 400
    QPVRTSRITI GGHRSDVRTL SFSSDNIAVL SAAAESVKIW NRSTLQCIRT 450
    MPCEYALCSF FVPGDRQVVI GTKTGNMQLY DLASGNLLET IAAHDGALWS 500
    MSLSPDQRGF VTGGADKAVK FWDFELVTDK NSTQKRLSVK QTRILQLDED 550
    VLYVCYSPDQ RLLAVSLLDC TVKIFYVDTL KFFLSLYGHK LPVICMDISH 600
    DGALIATGSA DRNVKIWGLD FGDCHRSLFA HDDSVMHLRF VPKSHLFFTA 650
    GKDHKIKQWD ADKFEHIQTL EGHHQEIWCL AVSPSGDYVV SASHDKSLRL 700
    WERTREPLIL EEERELQREA EYEESVAKEE QPAVPGETQG DNYFTGKKTI 750
    ETVKAAERIM EAIELYREET AKMKEHRAIC RAAGKEVPLP VNPILMAHGN 800
    ISPSAYVLET FKGIRSSELE EALLVLPFSY VPDILTLFNG FIQTGSDVEL 850
    LCRCLFFLLR IHFGQITSNQ MLVPVIEKLK ETTISKVRQV QDVIGFNMAG 900
    LNYLKRECEA KSEVMFFAEA TSHLEEKKRK RKNRRKMILT LT 942
    Length:942
    Mass (Da):106,073
    Last modified:April 20, 2010 - v1
    Checksum:iD28B6729F1A3C23F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06019582 Genomic DNA. No translation available.
    AABR06019583 Genomic DNA. No translation available.
    CH474015 Genomic DNA. Translation: EDL85541.1.
    CH474015 Genomic DNA. Translation: EDL85542.1.
    RefSeqiNP_001101175.1. NM_001107705.1.
    UniGeneiRn.12973.

    Genome annotation databases

    EnsembliENSRNOT00000026726; ENSRNOP00000026726; ENSRNOG00000019670.
    GeneIDi310720.
    KEGGirno:310720.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06019582 Genomic DNA. No translation available.
    AABR06019583 Genomic DNA. No translation available.
    CH474015 Genomic DNA. Translation: EDL85541.1 .
    CH474015 Genomic DNA. Translation: EDL85542.1 .
    RefSeqi NP_001101175.1. NM_001107705.1.
    UniGenei Rn.12973.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000026726 ; ENSRNOP00000026726 ; ENSRNOG00000019670 .
    GeneIDi 310720.
    KEGGi rno:310720.

    Organism-specific databases

    CTDi 10885.
    RGDi 1307480. Wdr3.

    Phylogenomic databases

    GeneTreei ENSGT00750000117677.
    KOi K14556.
    OMAi FECGYAL.
    OrthoDBi EOG77DJ54.
    TreeFami TF300427.

    Miscellaneous databases

    NextBioi 662507.
    PROi D4A106.

    Family and domain databases

    Gene3Di 2.130.10.10. 3 hits.
    InterProi IPR020472. G-protein_beta_WD-40_rep.
    IPR011047. Quinonprotein_ADH-like_supfam.
    IPR007148. SSU_processome_Utp12.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view ]
    Pfami PF04003. Utp12. 1 hit.
    PF00400. WD40. 9 hits.
    [Graphical view ]
    PRINTSi PR00320. GPROTEINBRPT.
    SMARTi SM00320. WD40. 11 hits.
    [Graphical view ]
    SUPFAMi SSF50998. SSF50998. 2 hits.
    PROSITEi PS00678. WD_REPEATS_1. 2 hits.
    PS50082. WD_REPEATS_2. 8 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A106_RAT
    AccessioniPrimary (citable) accession number: D4A106
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3