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Protein
Submitted name:

Protein Wdr3

Gene

Wdr3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Wdr3Imported
Submitted name:
WD repeat domain 3 (Predicted), isoform CRA_cImported
Gene namesi
Name:Wdr3Imported
Synonyms:Wdr3_predictedImported
ORF Names:rCG_52071Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1307480. Wdr3.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026726.

Family & Domainsi

Keywords - Domaini

RepeatUniRule annotationSAAS annotation, WD repeatUniRule annotationSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00780000122016.
KOiK14556.
OMAiFECGYAL.
OrthoDBiEOG77DJ54.
TreeFamiTF300427.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR011047. Quinonprotein_ADH-like_supfam.
IPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF04003. Utp12. 1 hit.
PF00400. WD40. 9 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 11 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 8 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A106-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLTKQYLRY VASAVFGLIG SQKGNIVFVT LRGEKGRYVA VPACEHVFIW
60 70 80 90 100
DLRKGEKILI LQGLKQEVTC LCPSPDGLHL AVGYEDGAIR VFSLLSGEGN
110 120 130 140 150
ITFNGHRAAV TSLKYDQLGG RLASGSKDTD VIIWDVINES GLYRLKGHKD
160 170 180 190 200
AVTQALFLRE RNLLVTSGKD TMVKWWDLDN QHCFKTMVGH RTEVWGLVLV
210 220 230 240 250
SEETRLITGA ADSELRAWDI AYLQEIDDPE EPEPKKIKEC PGIQDTPEAE
260 270 280 290 300
DRTLEADDEK SEDRILSCRK AGSLMREGRD RVVNLAVDKT GRILACHGTD
310 320 330 340 350
SVLEVFCILS KAEVQKKMDK KLKKARKKAR LNSANEEEDP ETSVSMTLQD
360 370 380 390 400
EILRVTKIKT SAKIKSFDLI HSPQGELKAV FLLQNNLVEL YSLSTSLPNP
410 420 430 440 450
QPVRTSRITI GGHRSDVRTL SFSSDNIAVL SAAAESVKIW NRSTLQCIRT
460 470 480 490 500
MPCEYALCSF FVPGDRQVVI GTKTGNMQLY DLASGNLLET IAAHDGALWS
510 520 530 540 550
MSLSPDQRGF VTGGADKAVK FWDFELVTDK NSTQKRLSVK QTRILQLDED
560 570 580 590 600
VLYVCYSPDQ RLLAVSLLDC TVKIFYVDTL KFFLSLYGHK LPVICMDISH
610 620 630 640 650
DGALIATGSA DRNVKIWGLD FGDCHRSLFA HDDSVMHLRF VPKSHLFFTA
660 670 680 690 700
GKDHKIKQWD ADKFEHIQTL EGHHQEIWCL AVSPSGDYVV SASHDKSLRL
710 720 730 740 750
WERTREPLIL EEERELQREA EYEESVAKEE QPAVPGETQG DNYFTGKKTI
760 770 780 790 800
ETVKAAERIM EAIELYREET AKMKEHRAIC RAAGKEVPLP VNPILMAHGN
810 820 830 840 850
ISPSAYVLET FKGIRSSELE EALLVLPFSY VPDILTLFNG FIQTGSDVEL
860 870 880 890 900
LCRCLFFLLR IHFGQITSNQ MLVPVIEKLK ETTISKVRQV QDVIGFNMAG
910 920 930 940
LNYLKRECEA KSEVMFFAEA TSHLEEKKRK RKNRRKMILT LT
Length:942
Mass (Da):106,073
Last modified:April 20, 2010 - v1
Checksum:iD28B6729F1A3C23F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06019582 Genomic DNA. No translation available.
AABR06019583 Genomic DNA. No translation available.
CH474015 Genomic DNA. Translation: EDL85541.1.
CH474015 Genomic DNA. Translation: EDL85542.1.
RefSeqiNP_001101175.1. NM_001107705.1.
UniGeneiRn.12973.

Genome annotation databases

EnsembliENSRNOT00000026726; ENSRNOP00000026726; ENSRNOG00000019670.
GeneIDi310720.
KEGGirno:310720.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06019582 Genomic DNA. No translation available.
AABR06019583 Genomic DNA. No translation available.
CH474015 Genomic DNA. Translation: EDL85541.1.
CH474015 Genomic DNA. Translation: EDL85542.1.
RefSeqiNP_001101175.1. NM_001107705.1.
UniGeneiRn.12973.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026726.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000026726; ENSRNOP00000026726; ENSRNOG00000019670.
GeneIDi310720.
KEGGirno:310720.

Organism-specific databases

CTDi10885.
RGDi1307480. Wdr3.

Phylogenomic databases

GeneTreeiENSGT00780000122016.
KOiK14556.
OMAiFECGYAL.
OrthoDBiEOG77DJ54.
TreeFamiTF300427.

Miscellaneous databases

NextBioi662507.
PROiD4A106.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR011047. Quinonprotein_ADH-like_supfam.
IPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF04003. Utp12. 1 hit.
PF00400. WD40. 9 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 11 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 8 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A106_RAT
AccessioniPrimary (citable) accession number: D4A106
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: June 24, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.