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D4A106 (D4A106_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

WD repeat domain 3 (Predicted), isoform CRA_c EMBL EDL85541.1
Gene names
Name:Wdr3 RGD 1307480 Ensembl ENSRNOP00000026726
Synonyms:Wdr3_predicted EMBL EDL85541.1
ORF Names:rCG_52071 EMBL EDL85541.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000026726
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length942 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D4A106 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: D28B6729F1A3C23F

FASTA942106,073
        10         20         30         40         50         60 
MGLTKQYLRY VASAVFGLIG SQKGNIVFVT LRGEKGRYVA VPACEHVFIW DLRKGEKILI 

        70         80         90        100        110        120 
LQGLKQEVTC LCPSPDGLHL AVGYEDGAIR VFSLLSGEGN ITFNGHRAAV TSLKYDQLGG 

       130        140        150        160        170        180 
RLASGSKDTD VIIWDVINES GLYRLKGHKD AVTQALFLRE RNLLVTSGKD TMVKWWDLDN 

       190        200        210        220        230        240 
QHCFKTMVGH RTEVWGLVLV SEETRLITGA ADSELRAWDI AYLQEIDDPE EPEPKKIKEC 

       250        260        270        280        290        300 
PGIQDTPEAE DRTLEADDEK SEDRILSCRK AGSLMREGRD RVVNLAVDKT GRILACHGTD 

       310        320        330        340        350        360 
SVLEVFCILS KAEVQKKMDK KLKKARKKAR LNSANEEEDP ETSVSMTLQD EILRVTKIKT 

       370        380        390        400        410        420 
SAKIKSFDLI HSPQGELKAV FLLQNNLVEL YSLSTSLPNP QPVRTSRITI GGHRSDVRTL 

       430        440        450        460        470        480 
SFSSDNIAVL SAAAESVKIW NRSTLQCIRT MPCEYALCSF FVPGDRQVVI GTKTGNMQLY 

       490        500        510        520        530        540 
DLASGNLLET IAAHDGALWS MSLSPDQRGF VTGGADKAVK FWDFELVTDK NSTQKRLSVK 

       550        560        570        580        590        600 
QTRILQLDED VLYVCYSPDQ RLLAVSLLDC TVKIFYVDTL KFFLSLYGHK LPVICMDISH 

       610        620        630        640        650        660 
DGALIATGSA DRNVKIWGLD FGDCHRSLFA HDDSVMHLRF VPKSHLFFTA GKDHKIKQWD 

       670        680        690        700        710        720 
ADKFEHIQTL EGHHQEIWCL AVSPSGDYVV SASHDKSLRL WERTREPLIL EEERELQREA 

       730        740        750        760        770        780 
EYEESVAKEE QPAVPGETQG DNYFTGKKTI ETVKAAERIM EAIELYREET AKMKEHRAIC 

       790        800        810        820        830        840 
RAAGKEVPLP VNPILMAHGN ISPSAYVLET FKGIRSSELE EALLVLPFSY VPDILTLFNG 

       850        860        870        880        890        900 
FIQTGSDVEL LCRCLFFLLR IHFGQITSNQ MLVPVIEKLK ETTISKVRQV QDVIGFNMAG 

       910        920        930        940 
LNYLKRECEA KSEVMFFAEA TSHLEEKKRK RKNRRKMILT LT 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000026726.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL85541.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL85541.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000026726.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06019582 Genomic DNA. No translation available.
AABR06019583 Genomic DNA. No translation available.
CH474015 Genomic DNA. Translation: EDL85541.1.
CH474015 Genomic DNA. Translation: EDL85542.1.
RefSeqNP_001101175.1. NM_001107705.1.
UniGeneRn.12973.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000026726; ENSRNOP00000026726; ENSRNOG00000019670.
GeneID310720.
KEGGrno:310720.

Organism-specific databases

CTD10885.
RGD1307480. Wdr3.

Phylogenomic databases

GeneTreeENSGT00750000117677.
KOK14556.
OMAKFEQIQR.
OrthoDBEOG77DJ54.
TreeFamTF300427.

Family and domain databases

Gene3D2.130.10.10. 3 hits.
InterProIPR020472. G-protein_beta_WD-40_rep.
IPR011047. Quinonprotein_ADH-like_supfam.
IPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamPF04003. Utp12. 1 hit.
PF00400. WD40. 9 hits.
[Graphical view]
PRINTSPR00320. GPROTEINBRPT.
SMARTSM00320. WD40. 11 hits.
[Graphical view]
SUPFAMSSF50998. SSF50998. 2 hits.
PROSITEPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 8 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio662507.
PROD4A106.

Entry information

Entry nameD4A106_RAT
AccessionPrimary (citable) accession number: D4A106
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 16, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)