D4A0R1 (D4A0R1_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Zfpm2 Ensembl ENSRNOP00000035072

Gene names

Name:

Zfpm2 Ensembl ENSRNOP00000035072 RGD 1306021

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000035072

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1050 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000035072

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	embryonic organ development Inferred from electronic annotation. Source: Compara in utero embryonic development Inferred from electronic annotation. Source: Compara lung development Inferred from electronic annotation. Source: Compara negative regulation of cell death Inferred from electronic annotation. Source: Compara negative regulation of fat cell differentiation Inferred from electronic annotation. Source: Compara negative regulation of female gonad development Inferred from electronic annotation. Source: Compara negative regulation of transcription from RNA polymerase II promoter Inferred from electronic annotation. Source: Compara outflow tract septum morphogenesis Inferred from electronic annotation. Source: Compara positive regulation of male gonad development Inferred from electronic annotation. Source: Compara positive regulation of transcription from RNA polymerase II promoter Inferred from electronic annotation. Source: Compara right ventricular cardiac muscle tissue morphogenesis Inferred from electronic annotation. Source: Compara vasculogenesis Inferred from electronic annotation. Source: Compara ventricular septum morphogenesis Inferred from electronic annotation. Source: Compara
Cellular_component	cytoplasm Inferred from electronic annotation. Source: Compara nucleus Inferred from direct assay PubMed 18067919. Source: RGD
Molecular_function	nucleic acid binding Inferred from electronic annotation. Source: InterPro nucleic acid binding transcription factor activity Inferred from electronic annotation. Source: Compara transcription corepressor activity Inferred from electronic annotation. Source: Compara zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	Ensembl ENSRNOP00000035072

Sequences

	Sequence		Length	Mass (Da)
	D4A0R1 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: 9956039A24A4F6D0	FASTA	1,050	116,577
	10 20 30 40 50 60 ELEVFQRDGE RKIQSRQQLP VGTTWGPFAG KMDLNNNSLK TKAQVSMVLT AGPKWLLDVT 70 80 90 100 110 120 WQGVEDSKNN CIVYSKGGQL WCTTTKAISE GEELIAFVVD FDSRLQTASQ MTLTEGMYPA 130 140 150 160 170 180 RLLDSIQLLP QQAAMASILP TAIVNKDIFP CKSCGIWYRS ERNLQAHLMY YCSGRQREAA 190 200 210 220 230 240 PVSEENEDST HQISSLCPFP QCTKSFSNAR ALEMHLTSHS GVKMEEFLPP GASLKCTVCS 250 260 270 280 290 300 YTADSVINFH QHLFSHLTQA AFRCNHCHFG FQTQRELLQH QELHVPGGKL PRESDMEHSP 310 320 330 340 350 360 SGTEDSLQPA TDLLARSDLS QSQKAMPTKD ASSDTELDKC EKKTQLFLTN QRPEMQPAAN 370 380 390 400 410 420 KQNFSYTKIK SEPSSPRLAS SPVQPNLGPS FPVGPFLSQF AFPQDITMVP QASEILAKMS 430 440 450 460 470 480 ELVHRRLRHG SSSYPPVIYS PLMPKGATCF ECNITFNNLD NYLVHKKHYC SSRWQQMAKS 490 500 510 520 530 540 PEFPSVSEKI PEALSPNTGQ TSINLLNPAA HPPDPENPLL QTSCINSSTV LDLIGPNGKG 550 560 570 580 590 600 HEKDFSTQAK KLPTSNNNDD KINGKPVDVK NPSGPLVDGE SDPNKTTCEA CNITFSRHET 610 620 630 640 650 660 YMVHKQYYCA TRHDPPLKRS ASNKVPAMQR TMRTRKRRKM YEMCLPEQEQ RPPLVQQRFL 670 680 690 700 710 720 DVANLSNPCS STQEPTEGLG ECYHPRCDIF PGIVSKHLET SLAINKCVPV PKCDTTHSSV 730 740 750 760 770 780 SCLEMDVPID LSKKCLSQSE RTTASPKRLL DYHECTVCKI SFNKVENYLA HKQNFCPVTA 790 800 810 820 830 840 HQRNDLGQLD GKVFPNPESE RNSPEVSFER NMIKCEKNGN PKQPSPNGNL FSSHLATLQG 850 860 870 880 890 900 LKVFSEAAQL IATKEENKHL FLPQCLYPGA IKKTKGADQL SPYYGIKPSD YIAGSLVIHN 910 920 930 940 950 960 TDVEQNTNTE NESPKGQASS NGCAVPKKDS LPLLPKNRGM VIVNGGLKQD ERPTANPQQE 970 980 990 1000 1010 1020 NISQNAQHED GHKSPSWISE NPLAANENVS PGIPCAEEQL SSIAKGVNGS TQAPSSGKYC 1030 1040 1050 RLCDIQFNNL SNFITHKKFY CSSHAAEHVK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000035072.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000035072.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06050559 Genomic DNA. No translation available. AABR06050560 Genomic DNA. No translation available. AABR06050561 Genomic DNA. No translation available. AABR06050562 Genomic DNA. No translation available. AABR06050563 Genomic DNA. No translation available. AABR06050564 Genomic DNA. No translation available. AABR06050565 Genomic DNA. No translation available. AABR06050566 Genomic DNA. No translation available. AABR06050567 Genomic DNA. No translation available. AABR06050568 Genomic DNA. No translation available. AABR06050569 Genomic DNA. No translation available. AABR06050570 Genomic DNA. No translation available. AABR06050571 Genomic DNA. No translation available.
IPI	IPI00392661.
UniGene	Rn.135463.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000029419; ENSRNOP00000035072; ENSRNOG00000004109.
KEGG	rno:314930.
UCSC	RGD:1306021. rat.
Organism-specific databases
CTD	23414.
RGD	1306021. Zfpm2.
Phylogenomic databases
GeneTree	ENSGT00530000063823.
OrthoDB	EOG412M4R.
Gene expression databases
ArrayExpress	D4A0R1.
Family and domain databases
Gene3D	3.30.160.60. 1 hit.
InterPro	IPR007087. Znf_C2H2. IPR015880. Znf_C2H2-like. IPR013087. Znf_C2H2/integrase_DNA-bd. [Graphical view]
SMART	SM00355. ZnF_C2H2. 8 hits. [Graphical view]
PROSITE	PS00028. ZINC_FINGER_C2H2_1. 2 hits. PS50157. ZINC_FINGER_C2H2_2. 2 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	668387.

Entry information

Entry name

D4A0R1_RAT

Accession

Primary (citable) accession number: D4A0R1

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 3, 2013
Last modified:	May 1, 2013
This is version 29 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)