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D4A0R1 (D4A0R1_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length1050 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000035072

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processembryonic organ development

Inferred from electronic annotation. Source: Ensembl

in utero embryonic development

Inferred from electronic annotation. Source: Ensembl

lung development

Inferred from electronic annotation. Source: Ensembl

negative regulation of cell death

Inferred from electronic annotation. Source: Ensembl

negative regulation of fat cell differentiation

Inferred from electronic annotation. Source: Ensembl

negative regulation of female gonad development

Inferred from electronic annotation. Source: Ensembl

negative regulation of transcription from RNA polymerase II promoter

Inferred from electronic annotation. Source: Ensembl

outflow tract septum morphogenesis

Inferred from electronic annotation. Source: Ensembl

positive regulation of male gonad development

Inferred from electronic annotation. Source: Ensembl

positive regulation of transcription from RNA polymerase II promoter

Inferred from electronic annotation. Source: Ensembl

right ventricular cardiac muscle tissue morphogenesis

Inferred from electronic annotation. Source: Ensembl

vasculogenesis

Inferred from electronic annotation. Source: Ensembl

ventricular septum morphogenesis

Inferred from electronic annotation. Source: Ensembl

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: Ensembl

nucleus

Inferred from direct assay PubMed 18067919. Source: RGD

   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: InterPro

nucleic acid binding

Inferred from electronic annotation. Source: InterPro

nucleic acid binding transcription factor activity

Inferred from electronic annotation. Source: Ensembl

protein binding

Inferred from physical interaction PubMed 18067919. Source: RGD

transcription corepressor activity

Inferred from electronic annotation. Source: Ensembl

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSRNOP00000035072

Sequences

Sequence LengthMass (Da)Tools
D4A0R1 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 9956039A24A4F6D0

FASTA1,050116,577
        10         20         30         40         50         60 
ELEVFQRDGE RKIQSRQQLP VGTTWGPFAG KMDLNNNSLK TKAQVSMVLT AGPKWLLDVT 

        70         80         90        100        110        120 
WQGVEDSKNN CIVYSKGGQL WCTTTKAISE GEELIAFVVD FDSRLQTASQ MTLTEGMYPA 

       130        140        150        160        170        180 
RLLDSIQLLP QQAAMASILP TAIVNKDIFP CKSCGIWYRS ERNLQAHLMY YCSGRQREAA 

       190        200        210        220        230        240 
PVSEENEDST HQISSLCPFP QCTKSFSNAR ALEMHLTSHS GVKMEEFLPP GASLKCTVCS 

       250        260        270        280        290        300 
YTADSVINFH QHLFSHLTQA AFRCNHCHFG FQTQRELLQH QELHVPGGKL PRESDMEHSP 

       310        320        330        340        350        360 
SGTEDSLQPA TDLLARSDLS QSQKAMPTKD ASSDTELDKC EKKTQLFLTN QRPEMQPAAN 

       370        380        390        400        410        420 
KQNFSYTKIK SEPSSPRLAS SPVQPNLGPS FPVGPFLSQF AFPQDITMVP QASEILAKMS 

       430        440        450        460        470        480 
ELVHRRLRHG SSSYPPVIYS PLMPKGATCF ECNITFNNLD NYLVHKKHYC SSRWQQMAKS 

       490        500        510        520        530        540 
PEFPSVSEKI PEALSPNTGQ TSINLLNPAA HPPDPENPLL QTSCINSSTV LDLIGPNGKG 

       550        560        570        580        590        600 
HEKDFSTQAK KLPTSNNNDD KINGKPVDVK NPSGPLVDGE SDPNKTTCEA CNITFSRHET 

       610        620        630        640        650        660 
YMVHKQYYCA TRHDPPLKRS ASNKVPAMQR TMRTRKRRKM YEMCLPEQEQ RPPLVQQRFL 

       670        680        690        700        710        720 
DVANLSNPCS STQEPTEGLG ECYHPRCDIF PGIVSKHLET SLAINKCVPV PKCDTTHSSV 

       730        740        750        760        770        780 
SCLEMDVPID LSKKCLSQSE RTTASPKRLL DYHECTVCKI SFNKVENYLA HKQNFCPVTA 

       790        800        810        820        830        840 
HQRNDLGQLD GKVFPNPESE RNSPEVSFER NMIKCEKNGN PKQPSPNGNL FSSHLATLQG 

       850        860        870        880        890        900 
LKVFSEAAQL IATKEENKHL FLPQCLYPGA IKKTKGADQL SPYYGIKPSD YIAGSLVIHN 

       910        920        930        940        950        960 
TDVEQNTNTE NESPKGQASS NGCAVPKKDS LPLLPKNRGM VIVNGGLKQD ERPTANPQQE 

       970        980        990       1000       1010       1020 
NISQNAQHED GHKSPSWISE NPLAANENVS PGIPCAEEQL SSIAKGVNGS TQAPSSGKYC 

      1030       1040       1050 
RLCDIQFNNL SNFITHKKFY CSSHAAEHVK 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000035072.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000035072.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06050559 Genomic DNA. No translation available.
AABR06050560 Genomic DNA. No translation available.
AABR06050561 Genomic DNA. No translation available.
AABR06050562 Genomic DNA. No translation available.
AABR06050563 Genomic DNA. No translation available.
AABR06050564 Genomic DNA. No translation available.
AABR06050565 Genomic DNA. No translation available.
AABR06050566 Genomic DNA. No translation available.
AABR06050567 Genomic DNA. No translation available.
AABR06050568 Genomic DNA. No translation available.
AABR06050569 Genomic DNA. No translation available.
AABR06050570 Genomic DNA. No translation available.
AABR06050571 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000029419; ENSRNOP00000035072; ENSRNOG00000004109.
UCSCRGD:1306021. rat.

Organism-specific databases

RGD1306021. Zfpm2.

Phylogenomic databases

GeneTreeENSGT00530000063823.
OMADPNKTTC.
OrthoDBEOG74TWXR.
TreeFamTF331342.

Family and domain databases

Gene3D3.30.160.60. 1 hit.
InterProIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTSM00355. ZnF_C2H2. 8 hits.
[Graphical view]
PROSITEPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio668387.

Entry information

Entry nameD4A0R1_RAT
AccessionPrimary (citable) accession number: D4A0R1
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: June 11, 2014
This is version 39 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)