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D4A0R1

- D4A0R1_RAT

UniProt

D4A0R1 - D4A0R1_RAT

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Protein
Submitted name:

Protein Zfpm2

Gene
Zfpm2
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. nucleic acid binding Source: InterPro
  3. nucleic acid binding transcription factor activity Source: Ensembl
  4. protein binding Source: RGD
  5. transcription corepressor activity Source: Ensembl

GO - Biological processi

  1. embryonic organ development Source: Ensembl
  2. in utero embryonic development Source: Ensembl
  3. lung development Source: Ensembl
  4. negative regulation of cell death Source: Ensembl
  5. negative regulation of fat cell differentiation Source: Ensembl
  6. negative regulation of female gonad development Source: Ensembl
  7. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
  8. outflow tract septum morphogenesis Source: Ensembl
  9. positive regulation of male gonad development Source: Ensembl
  10. positive regulation of transcription from RNA polymerase II promoter Source: Ensembl
  11. right ventricular cardiac muscle tissue morphogenesis Source: Ensembl
  12. vasculogenesis Source: Ensembl
  13. ventricular septum morphogenesis Source: Ensembl
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196232. Factors involved in megakaryocyte development and platelet production.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zfpm2Imported
Gene namesi
Name:Zfpm2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 7

Organism-specific databases

RGDi1306021. Zfpm2.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. nucleus Source: RGD
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063823.
OMAiDPNKTTC.
OrthoDBiEOG74TWXR.
TreeFamiTF331342.

Family and domain databases

Gene3Di3.30.160.60. 1 hit.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 8 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D4A0R1-1 [UniParc]FASTAAdd to Basket

« Hide

ELEVFQRDGE RKIQSRQQLP VGTTWGPFAG KMDLNNNSLK TKAQVSMVLT     50
AGPKWLLDVT WQGVEDSKNN CIVYSKGGQL WCTTTKAISE GEELIAFVVD 100
FDSRLQTASQ MTLTEGMYPA RLLDSIQLLP QQAAMASILP TAIVNKDIFP 150
CKSCGIWYRS ERNLQAHLMY YCSGRQREAA PVSEENEDST HQISSLCPFP 200
QCTKSFSNAR ALEMHLTSHS GVKMEEFLPP GASLKCTVCS YTADSVINFH 250
QHLFSHLTQA AFRCNHCHFG FQTQRELLQH QELHVPGGKL PRESDMEHSP 300
SGTEDSLQPA TDLLARSDLS QSQKAMPTKD ASSDTELDKC EKKTQLFLTN 350
QRPEMQPAAN KQNFSYTKIK SEPSSPRLAS SPVQPNLGPS FPVGPFLSQF 400
AFPQDITMVP QASEILAKMS ELVHRRLRHG SSSYPPVIYS PLMPKGATCF 450
ECNITFNNLD NYLVHKKHYC SSRWQQMAKS PEFPSVSEKI PEALSPNTGQ 500
TSINLLNPAA HPPDPENPLL QTSCINSSTV LDLIGPNGKG HEKDFSTQAK 550
KLPTSNNNDD KINGKPVDVK NPSGPLVDGE SDPNKTTCEA CNITFSRHET 600
YMVHKQYYCA TRHDPPLKRS ASNKVPAMQR TMRTRKRRKM YEMCLPEQEQ 650
RPPLVQQRFL DVANLSNPCS STQEPTEGLG ECYHPRCDIF PGIVSKHLET 700
SLAINKCVPV PKCDTTHSSV SCLEMDVPID LSKKCLSQSE RTTASPKRLL 750
DYHECTVCKI SFNKVENYLA HKQNFCPVTA HQRNDLGQLD GKVFPNPESE 800
RNSPEVSFER NMIKCEKNGN PKQPSPNGNL FSSHLATLQG LKVFSEAAQL 850
IATKEENKHL FLPQCLYPGA IKKTKGADQL SPYYGIKPSD YIAGSLVIHN 900
TDVEQNTNTE NESPKGQASS NGCAVPKKDS LPLLPKNRGM VIVNGGLKQD 950
ERPTANPQQE NISQNAQHED GHKSPSWISE NPLAANENVS PGIPCAEEQL 1000
SSIAKGVNGS TQAPSSGKYC RLCDIQFNNL SNFITHKKFY CSSHAAEHVK 1050
Length:1,050
Mass (Da):116,577
Last modified:April 3, 2013 - v2
Checksum:i9956039A24A4F6D0
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06050559 Genomic DNA. No translation available.
AABR06050560 Genomic DNA. No translation available.
AABR06050561 Genomic DNA. No translation available.
AABR06050562 Genomic DNA. No translation available.
AABR06050563 Genomic DNA. No translation available.
AABR06050564 Genomic DNA. No translation available.
AABR06050565 Genomic DNA. No translation available.
AABR06050566 Genomic DNA. No translation available.
AABR06050567 Genomic DNA. No translation available.
AABR06050568 Genomic DNA. No translation available.
AABR06050569 Genomic DNA. No translation available.
AABR06050570 Genomic DNA. No translation available.
AABR06050571 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000029419; ENSRNOP00000035072; ENSRNOG00000004109.
UCSCiRGD:1306021. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06050559 Genomic DNA. No translation available.
AABR06050560 Genomic DNA. No translation available.
AABR06050561 Genomic DNA. No translation available.
AABR06050562 Genomic DNA. No translation available.
AABR06050563 Genomic DNA. No translation available.
AABR06050564 Genomic DNA. No translation available.
AABR06050565 Genomic DNA. No translation available.
AABR06050566 Genomic DNA. No translation available.
AABR06050567 Genomic DNA. No translation available.
AABR06050568 Genomic DNA. No translation available.
AABR06050569 Genomic DNA. No translation available.
AABR06050570 Genomic DNA. No translation available.
AABR06050571 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000029419 ; ENSRNOP00000035072 ; ENSRNOG00000004109 .
UCSCi RGD:1306021. rat.

Organism-specific databases

RGDi 1306021. Zfpm2.

Phylogenomic databases

GeneTreei ENSGT00530000063823.
OMAi DPNKTTC.
OrthoDBi EOG74TWXR.
TreeFami TF331342.

Enzyme and pathway databases

Reactomei REACT_196232. Factors involved in megakaryocyte development and platelet production.

Miscellaneous databases

NextBioi 668387.

Family and domain databases

Gene3Di 3.30.160.60. 1 hit.
InterProi IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
SMARTi SM00355. ZnF_C2H2. 8 hits.
[Graphical view ]
PROSITEi PS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A0R1_RAT
AccessioniPrimary (citable) accession number: D4A0R1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: September 3, 2014
This is version 40 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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