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D4A054

- D4A054_RAT

UniProt

D4A054 - D4A054_RAT

Protein
Submitted name:

Protein LOC100911178

Gene

Ranbp2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. peptidyl-prolyl cis-trans isomerase activity Source: InterPro
    2. protein binding Source: IntAct
    3. zinc ion binding Source: InterPro

    GO - Biological processi

    1. intracellular transport Source: InterPro
    2. protein folding Source: InterPro

    Enzyme and pathway databases

    ReactomeiREACT_194781. Separation of Sister Chromatids.
    REACT_198363. Nuclear Pore Complex (NPC) Disassembly.
    REACT_198611. Resolution of Sister Chromatid Cohesion.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein LOC100911178Imported
    Gene namesi
    Name:Ranbp2Imported
    Synonyms:LOC100911178Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 20

    Organism-specific databases

    RGDi6494852. LOC100911178.
    1560047. Ranbp2.

    PTM / Processingi

    Proteomic databases

    PRIDEiD4A054.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    Park2Q9JK662EBI-973937,EBI-973793

    Protein-protein interaction databases

    IntActiD4A054. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliD4A054.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains PPIase cyclophilin-type domain.SAAS annotation

    Keywords - Domaini

    TPR repeatSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00750000117302.
    PhylomeDBiD4A054.
    TreeFamiTF314797.

    Family and domain databases

    Gene3Di1.25.40.10. 2 hits.
    2.30.29.30. 4 hits.
    2.40.100.10. 1 hit.
    InterProiIPR029000. Cyclophilin-like_dom.
    IPR020892. Cyclophilin-type_PPIase_CS.
    IPR002130. Cyclophilin-type_PPIase_dom.
    IPR022011. IR1-M.
    IPR011993. PH_like_dom.
    IPR000156. Ran_bind_dom.
    IPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    IPR019734. TPR_repeat.
    IPR001876. Znf_RanBP2.
    [Graphical view]
    PfamiPF12185. IR1-M. 2 hits.
    PF00160. Pro_isomerase. 1 hit.
    PF00638. Ran_BP1. 4 hits.
    PF00515. TPR_1. 1 hit.
    PF00641. zf-RanBP. 6 hits.
    [Graphical view]
    PRINTSiPR00153. CSAPPISMRASE.
    SMARTiSM00160. RanBD. 4 hits.
    SM00547. ZnF_RBZ. 6 hits.
    [Graphical view]
    SUPFAMiSSF50891. SSF50891. 1 hit.
    PROSITEiPS00170. CSA_PPIASE_1. 1 hit.
    PS50072. CSA_PPIASE_2. 1 hit.
    PS50196. RANBD1. 4 hits.
    PS50005. TPR. 2 hits.
    PS50293. TPR_REGION. 1 hit.
    PS01358. ZF_RANBP2_1. 6 hits.
    PS50199. ZF_RANBP2_2. 6 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A054-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRRSKAEVER YIASVQGSAP SPREKSMKGF YFAKLYYEAK EYDLAKKYIS     50
    TYINVQERDP KAHRFLGLLY EIEENTDKAV ECYKRSVELN PTQKDLVLKI 100
    AELLCKNDVT DGRAKYWVER AAKLFPGSPA IYKLKEQLLD CKGEDGWNKL 150
    FDLIQSELYA RPDDVHVNIR LVELYRSNKR LKDAVAHCHE ADRNMALRSS 200
    LEWNSCVVQT LKEYLESLQC LDSDKSTWRA TNKDLLLAYS NLMLLTLSTR 250
    DVQESRELLE SFDSALQSVK SSVGGNDELS ATFLETKGHF YMHVGSLLLK 300
    MGQQSDIQWR ALSELAALCY LIAFQVPRPK VKLIKGETGQ NLLEMMAHDR 350
    LSQSGHMLLN LSRGKQDFLK EVVESFANKS GQSALCDALF SSQSSKDRSF 400
    LGNDDIGNLD GQVPDLDDLA RYDTGAVRAH SGSLQHLTWL GLQWNSLPTL 450
    PAIRKWLKQL FHHLPQETSR LETNAPESIC ILDLEVFLLG VIYTSHLQLR 500
    EKSNSHHTSY QPLCLPLPVC RQLCTERQKS WWDAVCTLIH RKALPGTSAK 550
    LRLLVQREIN SLRGQEKHGL QPALLVHWAQ SLQKTGSSLN SFYDQREYIG 600
    RSVHYWRKVL PLLKMIRKKN SIPEPIDPLF KHFHSVDIQV SEIGEYEEDA 650
    HITFAILDAV NGNIEDAMTA FESIKNVVSY WNLALIFHRK AEDIENDALS 700
    PEEQEECKNY LRKTRDYLIK ILDDSDSNIS VVQKLPVPLE SVKEMLNSVM 750
    QELEDYSEGG TLYKNGCFRS ADSELKHSTP SPTKYSLSPS KSYKYSPKTP 800
    PRWAEDQNSL LKMICQQVEA IKKEMQELKL NSNNSASPHR WPAEHYRQDP 850
    VPDGYQGSQT FHGAPLTVAT TGPSVYYSQS PAYNSQYLLR PAANVTPTKG 900
    PVYGMNRLPP QQHIYAYSQQ MHTPPVQSSS SCMFSQEMYG PPLRFESPAT 950
    GILSPRGDDY FNYNVQQTST NPPLPEPGYF TKPPLVAHAS RSGESKVIEF 1000
    GKSNFVQPMQ GEVIRPPLAT PAHTTQPTPF KFNSNFKSND GDFTFSSPQV 1050
    VTQSPSTAYS NSESLLGLLT SDKPLQGDGY SGLKPISAQT GGSRNTFSFG 1100
    SKSTLTENMG PNQQKNFGFR RSDDMFTFHG PGKSIFTTPT SELANKSHET 1150
    DGGSAHGDEE DDGPHFEPVV PLPDKIEVKT GEEDEEEFFC NRAKLFRFDG 1200
    ESKEWKERGI GNVKILRHKT SGKIRLLMRR EQVLKICANH YISPDMKLTP 1250
    NAGSDRSFVW HALDYADELP KPEQLAIRFK TPEEAALFKC KFEEAQNILK 1300
    ALGTNASTAA NHTLRIVKEP ATQDNKDICK SDGGNLNFEF QIVKKEGPFW 1350
    NCNSCSFKNA ATATKCVSCQ NTKPTNGKEL LGSPLVENGF ASKTGPENVQ 1400
    DRFALMTPNK EGHWDCSVCL VRNEPTVSRC IACQNTKNGS SFAQTSFKFG 1450
    QGDLSKSADS DFRSVFSKKE GQWDCSICLV RNEASSTKCV ACQNPAKQAK 1500
    EGQWDCSLCS VRNEANAVKC VACQNPVKPS SSTTVTVLPS FKFGTSEMTK 1550
    PPRSGFEGMF AKKEGQWDCS LCFVRNEASA SQCIACQNPN KQNQPTSAVS 1600
    APASSETSKS PKCGFEGLFT RKEGEWECTV CSVQNESSSL KCVSCDASKP 1650
    THKPIAEAPS AFTVGSKSQL NESAGSQVGT EFKSNFPEKN FKVGISEQKF 1700
    KFGHVDQEKT PSFTFQGSSN TEFKSIKDGF SFCIPVSADG FKFGIQEKGN 1750
    QEKKSEKHLE NDPGFQAHDT SGQKNGSGVV FGQTSSTFTF ADLAKSTSRE 1800
    GFQFGKKDPN FKGFSGAGEK LFSSQSGKVA EKANTSDLEK DDDAYKTEDS 1850
    DDIHFEPVVQ MPEKVELVTG EEDEKVLYSQ RVKLFRFDAE ISQWKERGLG 1900
    NLKILKNEVN GKLRMLMRRE QVLKVCANHW ITTTMNLKPL SGSDRAWMWL 1950
    ASDFSDGDAK LEQLAAKFKT PELAEEFKQK FEECQRLLLD IPLQTPHKLV 2000
    DTGRAAKLIQ RAEEMKSGLK DFKTFLTNDQ AKVTEEENTS SGADASSASD 2050
    TTVKQNPDNT GPALEWDNYD LREDALDDSV SSSSVHASPL ASSPVRKNLF 2100
    RFGESTTGFN FSFKSALSPS KSPAKLNQSG TSVGTDEESD VTQEEERDGQ 2150
    YFEPVVPLPD LIEVSSGEEN EQVVFSHRAK LYRYDKDVGQ WKERGIGDIK 2200
    ILQNYDNKQV RIVMRRDQVL KLCANHRITP DMTLQTMKGT ERVWVWTACD 2250
    FADGERKIEH LAVRFKLQDV ADSFKKIFDE AKTAQEKDCL ITPHVSHLST 2300
    PRESPCGKIA IAVLEETTRE RTDLTQGDEV VDTTSEAGET SSTSETTPKA 2350
    VVSPPKFVFG SESVKSIFSS EKSKPFAFGN SSATGSLFGF SFNAPLKNSN 2400
    SEISSIVQSG SEGKVDPDKG ELPPNSDIKQ SSDGKVKNLI AFSKETSSTF 2450
    KTPEKAREKN KPEDPPSDTD ILIVYELTPT PEQKALAEKL LLPSTFFCYK 2500
    NRPGYVSEEE EDDEDFEMAV KKLNGKLYVD DSEKPLEENL ADNDKECVIV 2550
    WEKKPTVEER AKADTLKLPP TFFCGVCSDT DEDNGNGEDF QSELRKVQEA 2600
    QKSQSEKVTN TVGIEQTGET EATNPDGSKS EEPDSDTKHS SSSPVPGTMD 2650
    KPVDLSTKKE TDMEFPSQGE SKTVLFGFGS GTGLSFADLA SSNSGDFAFG 2700
    PKDKNFQWAN TGAAVFGTQS TSKDGDDEDG SDEDVVHNED IHFEPIVSLP 2750
    EVEVKSGEED EEVLFKERAK LYRWDRDVSQ WKERGIGDIK ILWHSVKNYY 2800
    RILMRRDQVF KVCANHVITK AMELKPLNFS NNALVWTASD YADGEAKIEQ 2850
    LAVRFKTKEI TECFKKKIEE CQQNIMKLQN GQVSLAAELS KETNPVVFFD 2900
    VCVDGEPLGR IIMELFSNIV PQTAENFRAL CTGEKGFGFK NSIFHRVVPD 2950
    FICQGGDITK YNGTGGQSIY GDKFDDENFD LKHTGPGLLS MANCGQNTNS 3000
    SQFFITLKKA EHLDFKHVVF GFVKDGMDTV RKIESFGSPK GSVSRRICIT 3050
    ECGQL 3055
    Length:3,055
    Mass (Da):341,033
    Last modified:April 20, 2010 - v1
    Checksum:iB7F065BEAC73C878
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06100914 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000001044; ENSRNOP00000001044; ENSRNOG00000000796.
    UCSCiRGD:1560047. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06100914 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali D4A054.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi D4A054. 1 interaction.

    Proteomic databases

    PRIDEi D4A054.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000001044 ; ENSRNOP00000001044 ; ENSRNOG00000000796 .
    UCSCi RGD:1560047. rat.

    Organism-specific databases

    RGDi 6494852. LOC100911178.
    1560047. Ranbp2.

    Phylogenomic databases

    GeneTreei ENSGT00750000117302.
    PhylomeDBi D4A054.
    TreeFami TF314797.

    Enzyme and pathway databases

    Reactomei REACT_194781. Separation of Sister Chromatids.
    REACT_198363. Nuclear Pore Complex (NPC) Disassembly.
    REACT_198611. Resolution of Sister Chromatid Cohesion.

    Miscellaneous databases

    NextBioi 35571486.

    Family and domain databases

    Gene3Di 1.25.40.10. 2 hits.
    2.30.29.30. 4 hits.
    2.40.100.10. 1 hit.
    InterProi IPR029000. Cyclophilin-like_dom.
    IPR020892. Cyclophilin-type_PPIase_CS.
    IPR002130. Cyclophilin-type_PPIase_dom.
    IPR022011. IR1-M.
    IPR011993. PH_like_dom.
    IPR000156. Ran_bind_dom.
    IPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    IPR019734. TPR_repeat.
    IPR001876. Znf_RanBP2.
    [Graphical view ]
    Pfami PF12185. IR1-M. 2 hits.
    PF00160. Pro_isomerase. 1 hit.
    PF00638. Ran_BP1. 4 hits.
    PF00515. TPR_1. 1 hit.
    PF00641. zf-RanBP. 6 hits.
    [Graphical view ]
    PRINTSi PR00153. CSAPPISMRASE.
    SMARTi SM00160. RanBD. 4 hits.
    SM00547. ZnF_RBZ. 6 hits.
    [Graphical view ]
    SUPFAMi SSF50891. SSF50891. 1 hit.
    PROSITEi PS00170. CSA_PPIASE_1. 1 hit.
    PS50072. CSA_PPIASE_2. 1 hit.
    PS50196. RANBD1. 4 hits.
    PS50005. TPR. 2 hits.
    PS50293. TPR_REGION. 1 hit.
    PS01358. ZF_RANBP2_1. 6 hits.
    PS50199. ZF_RANBP2_2. 6 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A054_RAT
    AccessioniPrimary (citable) accession number: D4A054
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3