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D4A054 (D4A054_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Protein LOC100911178 Ensembl ENSRNOP00000001044
Gene names
Name:Ranbp2 Ensembl ENSRNOP00000001044 RGD 1560047
Synonyms:LOC100911178 Ensembl ENSRNOP00000001044
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000001044
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length3055 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

Peptidylproline (omega=180) = peptidylproline (omega=0). SAAS SAAS020892

Sequence similarities

Contains 1 PPIase cyclophilin-type domain. RuleBase RU003420 SAAS SAAS020892

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000001044

Binary interactions

With

Entry

#Exp.

IntAct

Notes

Park2Q9JK662EBI-973937,EBI-973793

Sequences

Sequence LengthMass (Da)Tools
D4A054 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: B7F065BEAC73C878

FASTA3,055341,033
        10         20         30         40         50         60 
MRRSKAEVER YIASVQGSAP SPREKSMKGF YFAKLYYEAK EYDLAKKYIS TYINVQERDP 

        70         80         90        100        110        120 
KAHRFLGLLY EIEENTDKAV ECYKRSVELN PTQKDLVLKI AELLCKNDVT DGRAKYWVER 

       130        140        150        160        170        180 
AAKLFPGSPA IYKLKEQLLD CKGEDGWNKL FDLIQSELYA RPDDVHVNIR LVELYRSNKR 

       190        200        210        220        230        240 
LKDAVAHCHE ADRNMALRSS LEWNSCVVQT LKEYLESLQC LDSDKSTWRA TNKDLLLAYS 

       250        260        270        280        290        300 
NLMLLTLSTR DVQESRELLE SFDSALQSVK SSVGGNDELS ATFLETKGHF YMHVGSLLLK 

       310        320        330        340        350        360 
MGQQSDIQWR ALSELAALCY LIAFQVPRPK VKLIKGETGQ NLLEMMAHDR LSQSGHMLLN 

       370        380        390        400        410        420 
LSRGKQDFLK EVVESFANKS GQSALCDALF SSQSSKDRSF LGNDDIGNLD GQVPDLDDLA 

       430        440        450        460        470        480 
RYDTGAVRAH SGSLQHLTWL GLQWNSLPTL PAIRKWLKQL FHHLPQETSR LETNAPESIC 

       490        500        510        520        530        540 
ILDLEVFLLG VIYTSHLQLR EKSNSHHTSY QPLCLPLPVC RQLCTERQKS WWDAVCTLIH 

       550        560        570        580        590        600 
RKALPGTSAK LRLLVQREIN SLRGQEKHGL QPALLVHWAQ SLQKTGSSLN SFYDQREYIG 

       610        620        630        640        650        660 
RSVHYWRKVL PLLKMIRKKN SIPEPIDPLF KHFHSVDIQV SEIGEYEEDA HITFAILDAV 

       670        680        690        700        710        720 
NGNIEDAMTA FESIKNVVSY WNLALIFHRK AEDIENDALS PEEQEECKNY LRKTRDYLIK 

       730        740        750        760        770        780 
ILDDSDSNIS VVQKLPVPLE SVKEMLNSVM QELEDYSEGG TLYKNGCFRS ADSELKHSTP 

       790        800        810        820        830        840 
SPTKYSLSPS KSYKYSPKTP PRWAEDQNSL LKMICQQVEA IKKEMQELKL NSNNSASPHR 

       850        860        870        880        890        900 
WPAEHYRQDP VPDGYQGSQT FHGAPLTVAT TGPSVYYSQS PAYNSQYLLR PAANVTPTKG 

       910        920        930        940        950        960 
PVYGMNRLPP QQHIYAYSQQ MHTPPVQSSS SCMFSQEMYG PPLRFESPAT GILSPRGDDY 

       970        980        990       1000       1010       1020 
FNYNVQQTST NPPLPEPGYF TKPPLVAHAS RSGESKVIEF GKSNFVQPMQ GEVIRPPLAT 

      1030       1040       1050       1060       1070       1080 
PAHTTQPTPF KFNSNFKSND GDFTFSSPQV VTQSPSTAYS NSESLLGLLT SDKPLQGDGY 

      1090       1100       1110       1120       1130       1140 
SGLKPISAQT GGSRNTFSFG SKSTLTENMG PNQQKNFGFR RSDDMFTFHG PGKSIFTTPT 

      1150       1160       1170       1180       1190       1200 
SELANKSHET DGGSAHGDEE DDGPHFEPVV PLPDKIEVKT GEEDEEEFFC NRAKLFRFDG 

      1210       1220       1230       1240       1250       1260 
ESKEWKERGI GNVKILRHKT SGKIRLLMRR EQVLKICANH YISPDMKLTP NAGSDRSFVW 

      1270       1280       1290       1300       1310       1320 
HALDYADELP KPEQLAIRFK TPEEAALFKC KFEEAQNILK ALGTNASTAA NHTLRIVKEP 

      1330       1340       1350       1360       1370       1380 
ATQDNKDICK SDGGNLNFEF QIVKKEGPFW NCNSCSFKNA ATATKCVSCQ NTKPTNGKEL 

      1390       1400       1410       1420       1430       1440 
LGSPLVENGF ASKTGPENVQ DRFALMTPNK EGHWDCSVCL VRNEPTVSRC IACQNTKNGS 

      1450       1460       1470       1480       1490       1500 
SFAQTSFKFG QGDLSKSADS DFRSVFSKKE GQWDCSICLV RNEASSTKCV ACQNPAKQAK 

      1510       1520       1530       1540       1550       1560 
EGQWDCSLCS VRNEANAVKC VACQNPVKPS SSTTVTVLPS FKFGTSEMTK PPRSGFEGMF 

      1570       1580       1590       1600       1610       1620 
AKKEGQWDCS LCFVRNEASA SQCIACQNPN KQNQPTSAVS APASSETSKS PKCGFEGLFT 

      1630       1640       1650       1660       1670       1680 
RKEGEWECTV CSVQNESSSL KCVSCDASKP THKPIAEAPS AFTVGSKSQL NESAGSQVGT 

      1690       1700       1710       1720       1730       1740 
EFKSNFPEKN FKVGISEQKF KFGHVDQEKT PSFTFQGSSN TEFKSIKDGF SFCIPVSADG 

      1750       1760       1770       1780       1790       1800 
FKFGIQEKGN QEKKSEKHLE NDPGFQAHDT SGQKNGSGVV FGQTSSTFTF ADLAKSTSRE 

      1810       1820       1830       1840       1850       1860 
GFQFGKKDPN FKGFSGAGEK LFSSQSGKVA EKANTSDLEK DDDAYKTEDS DDIHFEPVVQ 

      1870       1880       1890       1900       1910       1920 
MPEKVELVTG EEDEKVLYSQ RVKLFRFDAE ISQWKERGLG NLKILKNEVN GKLRMLMRRE 

      1930       1940       1950       1960       1970       1980 
QVLKVCANHW ITTTMNLKPL SGSDRAWMWL ASDFSDGDAK LEQLAAKFKT PELAEEFKQK 

      1990       2000       2010       2020       2030       2040 
FEECQRLLLD IPLQTPHKLV DTGRAAKLIQ RAEEMKSGLK DFKTFLTNDQ AKVTEEENTS 

      2050       2060       2070       2080       2090       2100 
SGADASSASD TTVKQNPDNT GPALEWDNYD LREDALDDSV SSSSVHASPL ASSPVRKNLF 

      2110       2120       2130       2140       2150       2160 
RFGESTTGFN FSFKSALSPS KSPAKLNQSG TSVGTDEESD VTQEEERDGQ YFEPVVPLPD 

      2170       2180       2190       2200       2210       2220 
LIEVSSGEEN EQVVFSHRAK LYRYDKDVGQ WKERGIGDIK ILQNYDNKQV RIVMRRDQVL 

      2230       2240       2250       2260       2270       2280 
KLCANHRITP DMTLQTMKGT ERVWVWTACD FADGERKIEH LAVRFKLQDV ADSFKKIFDE 

      2290       2300       2310       2320       2330       2340 
AKTAQEKDCL ITPHVSHLST PRESPCGKIA IAVLEETTRE RTDLTQGDEV VDTTSEAGET 

      2350       2360       2370       2380       2390       2400 
SSTSETTPKA VVSPPKFVFG SESVKSIFSS EKSKPFAFGN SSATGSLFGF SFNAPLKNSN 

      2410       2420       2430       2440       2450       2460 
SEISSIVQSG SEGKVDPDKG ELPPNSDIKQ SSDGKVKNLI AFSKETSSTF KTPEKAREKN 

      2470       2480       2490       2500       2510       2520 
KPEDPPSDTD ILIVYELTPT PEQKALAEKL LLPSTFFCYK NRPGYVSEEE EDDEDFEMAV 

      2530       2540       2550       2560       2570       2580 
KKLNGKLYVD DSEKPLEENL ADNDKECVIV WEKKPTVEER AKADTLKLPP TFFCGVCSDT 

      2590       2600       2610       2620       2630       2640 
DEDNGNGEDF QSELRKVQEA QKSQSEKVTN TVGIEQTGET EATNPDGSKS EEPDSDTKHS 

      2650       2660       2670       2680       2690       2700 
SSSPVPGTMD KPVDLSTKKE TDMEFPSQGE SKTVLFGFGS GTGLSFADLA SSNSGDFAFG 

      2710       2720       2730       2740       2750       2760 
PKDKNFQWAN TGAAVFGTQS TSKDGDDEDG SDEDVVHNED IHFEPIVSLP EVEVKSGEED 

      2770       2780       2790       2800       2810       2820 
EEVLFKERAK LYRWDRDVSQ WKERGIGDIK ILWHSVKNYY RILMRRDQVF KVCANHVITK 

      2830       2840       2850       2860       2870       2880 
AMELKPLNFS NNALVWTASD YADGEAKIEQ LAVRFKTKEI TECFKKKIEE CQQNIMKLQN 

      2890       2900       2910       2920       2930       2940 
GQVSLAAELS KETNPVVFFD VCVDGEPLGR IIMELFSNIV PQTAENFRAL CTGEKGFGFK 

      2950       2960       2970       2980       2990       3000 
NSIFHRVVPD FICQGGDITK YNGTGGQSIY GDKFDDENFD LKHTGPGLLS MANCGQNTNS 

      3010       3020       3030       3040       3050 
SQFFITLKKA EHLDFKHVVF GFVKDGMDTV RKIESFGSPK GSVSRRICIT ECGQL

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000001044.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000001044.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06100914 Genomic DNA. No translation available.
IPIIPI00371944.

3D structure databases

ProteinModelPortalD4A054.
ModBaseSearch...

Protein-protein interaction databases

IntActD4A054. 1 interaction.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000001044; ENSRNOP00000001044; ENSRNOG00000000796.
UCSCRGD:1560047. rat.

Organism-specific databases

RGD6494852. LOC100911178.
1560047. Ranbp2.

Phylogenomic databases

GeneTreeENSGT00690000102083.
OrthoDBEOG4J3WG2.

Family and domain databases

Gene3D1.25.40.10. 2 hits.
2.30.29.30. 4 hits.
InterProIPR002130. Cyclophilin-like_PPIase_dom.
IPR020892. Cyclophilin-type_PPIase_CS.
IPR022011. IR1-M.
IPR011993. PH_like_dom.
IPR000156. Ran_bind_dom.
IPR001440. TPR-1.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR019734. TPR_repeat.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamPF12185. IR1-M. 2 hits.
PF00160. Pro_isomerase. 1 hit.
PF00638. Ran_BP1. 4 hits.
PF00515. TPR_1. 1 hit.
PF00641. zf-RanBP. 6 hits.
[Graphical view]
PRINTSPR00153. CSAPPISMRASE.
SMARTSM00160. RanBD. 4 hits.
SM00547. ZnF_RBZ. 6 hits.
[Graphical view]
SUPFAMSSF50891. CSA_PPIase. 1 hit.
PROSITEPS00170. CSA_PPIASE_1. 1 hit.
PS50072. CSA_PPIASE_2. 1 hit.
PS50196. RANBD1. 4 hits.
PS50005. TPR. 2 hits.
PS50293. TPR_REGION. 1 hit.
PS01358. ZF_RANBP2_1. 6 hits.
PS50199. ZF_RANBP2_2. 6 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio35571486.

Entry information

Entry nameD4A054_RAT
AccessionPrimary (citable) accession number: D4A054
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 3, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequences·References·Cross-refs·Entry info