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D4A054

- D4A054_RAT

UniProt

D4A054 - D4A054_RAT

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Protein
Submitted name:

Protein LOC100911178

Gene
Ranbp2, LOC100911178
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Peptidylproline (omega=180) = peptidylproline (omega=0).SAAS annotations

GO - Molecular functioni

  1. peptidyl-prolyl cis-trans isomerase activity Source: InterPro
  2. protein binding Source: IntAct
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. intracellular transport Source: InterPro
  2. protein folding Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_194781. Separation of Sister Chromatids.
REACT_198363. Nuclear Pore Complex (NPC) Disassembly.
REACT_198611. Resolution of Sister Chromatid Cohesion.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein LOC100911178Imported
Gene namesi
Name:Ranbp2Imported
Synonyms:LOC100911178Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 20

Organism-specific databases

RGDi6494852. LOC100911178.
1560047. Ranbp2.

PTM / Processingi

Proteomic databases

PRIDEiD4A054.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
Park2Q9JK662EBI-973937,EBI-973793

Protein-protein interaction databases

IntActiD4A054. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliD4A054.

Family & Domainsi

Sequence similaritiesi

Contains PPIase cyclophilin-type domain.SAAS annotations

Keywords - Domaini

TPR repeatSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00750000117302.
PhylomeDBiD4A054.
TreeFamiTF314797.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
2.30.29.30. 4 hits.
2.40.100.10. 1 hit.
InterProiIPR029000. Cyclophilin-like_dom.
IPR020892. Cyclophilin-type_PPIase_CS.
IPR002130. Cyclophilin-type_PPIase_dom.
IPR022011. IR1-M.
IPR011993. PH_like_dom.
IPR000156. Ran_bind_dom.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR019734. TPR_repeat.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF12185. IR1-M. 2 hits.
PF00160. Pro_isomerase. 1 hit.
PF00638. Ran_BP1. 4 hits.
PF00515. TPR_1. 1 hit.
PF00641. zf-RanBP. 6 hits.
[Graphical view]
PRINTSiPR00153. CSAPPISMRASE.
SMARTiSM00160. RanBD. 4 hits.
SM00547. ZnF_RBZ. 6 hits.
[Graphical view]
SUPFAMiSSF50891. SSF50891. 1 hit.
PROSITEiPS00170. CSA_PPIASE_1. 1 hit.
PS50072. CSA_PPIASE_2. 1 hit.
PS50196. RANBD1. 4 hits.
PS50005. TPR. 2 hits.
PS50293. TPR_REGION. 1 hit.
PS01358. ZF_RANBP2_1. 6 hits.
PS50199. ZF_RANBP2_2. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A054-1 [UniParc]FASTAAdd to Basket

« Hide

MRRSKAEVER YIASVQGSAP SPREKSMKGF YFAKLYYEAK EYDLAKKYIS     50
TYINVQERDP KAHRFLGLLY EIEENTDKAV ECYKRSVELN PTQKDLVLKI 100
AELLCKNDVT DGRAKYWVER AAKLFPGSPA IYKLKEQLLD CKGEDGWNKL 150
FDLIQSELYA RPDDVHVNIR LVELYRSNKR LKDAVAHCHE ADRNMALRSS 200
LEWNSCVVQT LKEYLESLQC LDSDKSTWRA TNKDLLLAYS NLMLLTLSTR 250
DVQESRELLE SFDSALQSVK SSVGGNDELS ATFLETKGHF YMHVGSLLLK 300
MGQQSDIQWR ALSELAALCY LIAFQVPRPK VKLIKGETGQ NLLEMMAHDR 350
LSQSGHMLLN LSRGKQDFLK EVVESFANKS GQSALCDALF SSQSSKDRSF 400
LGNDDIGNLD GQVPDLDDLA RYDTGAVRAH SGSLQHLTWL GLQWNSLPTL 450
PAIRKWLKQL FHHLPQETSR LETNAPESIC ILDLEVFLLG VIYTSHLQLR 500
EKSNSHHTSY QPLCLPLPVC RQLCTERQKS WWDAVCTLIH RKALPGTSAK 550
LRLLVQREIN SLRGQEKHGL QPALLVHWAQ SLQKTGSSLN SFYDQREYIG 600
RSVHYWRKVL PLLKMIRKKN SIPEPIDPLF KHFHSVDIQV SEIGEYEEDA 650
HITFAILDAV NGNIEDAMTA FESIKNVVSY WNLALIFHRK AEDIENDALS 700
PEEQEECKNY LRKTRDYLIK ILDDSDSNIS VVQKLPVPLE SVKEMLNSVM 750
QELEDYSEGG TLYKNGCFRS ADSELKHSTP SPTKYSLSPS KSYKYSPKTP 800
PRWAEDQNSL LKMICQQVEA IKKEMQELKL NSNNSASPHR WPAEHYRQDP 850
VPDGYQGSQT FHGAPLTVAT TGPSVYYSQS PAYNSQYLLR PAANVTPTKG 900
PVYGMNRLPP QQHIYAYSQQ MHTPPVQSSS SCMFSQEMYG PPLRFESPAT 950
GILSPRGDDY FNYNVQQTST NPPLPEPGYF TKPPLVAHAS RSGESKVIEF 1000
GKSNFVQPMQ GEVIRPPLAT PAHTTQPTPF KFNSNFKSND GDFTFSSPQV 1050
VTQSPSTAYS NSESLLGLLT SDKPLQGDGY SGLKPISAQT GGSRNTFSFG 1100
SKSTLTENMG PNQQKNFGFR RSDDMFTFHG PGKSIFTTPT SELANKSHET 1150
DGGSAHGDEE DDGPHFEPVV PLPDKIEVKT GEEDEEEFFC NRAKLFRFDG 1200
ESKEWKERGI GNVKILRHKT SGKIRLLMRR EQVLKICANH YISPDMKLTP 1250
NAGSDRSFVW HALDYADELP KPEQLAIRFK TPEEAALFKC KFEEAQNILK 1300
ALGTNASTAA NHTLRIVKEP ATQDNKDICK SDGGNLNFEF QIVKKEGPFW 1350
NCNSCSFKNA ATATKCVSCQ NTKPTNGKEL LGSPLVENGF ASKTGPENVQ 1400
DRFALMTPNK EGHWDCSVCL VRNEPTVSRC IACQNTKNGS SFAQTSFKFG 1450
QGDLSKSADS DFRSVFSKKE GQWDCSICLV RNEASSTKCV ACQNPAKQAK 1500
EGQWDCSLCS VRNEANAVKC VACQNPVKPS SSTTVTVLPS FKFGTSEMTK 1550
PPRSGFEGMF AKKEGQWDCS LCFVRNEASA SQCIACQNPN KQNQPTSAVS 1600
APASSETSKS PKCGFEGLFT RKEGEWECTV CSVQNESSSL KCVSCDASKP 1650
THKPIAEAPS AFTVGSKSQL NESAGSQVGT EFKSNFPEKN FKVGISEQKF 1700
KFGHVDQEKT PSFTFQGSSN TEFKSIKDGF SFCIPVSADG FKFGIQEKGN 1750
QEKKSEKHLE NDPGFQAHDT SGQKNGSGVV FGQTSSTFTF ADLAKSTSRE 1800
GFQFGKKDPN FKGFSGAGEK LFSSQSGKVA EKANTSDLEK DDDAYKTEDS 1850
DDIHFEPVVQ MPEKVELVTG EEDEKVLYSQ RVKLFRFDAE ISQWKERGLG 1900
NLKILKNEVN GKLRMLMRRE QVLKVCANHW ITTTMNLKPL SGSDRAWMWL 1950
ASDFSDGDAK LEQLAAKFKT PELAEEFKQK FEECQRLLLD IPLQTPHKLV 2000
DTGRAAKLIQ RAEEMKSGLK DFKTFLTNDQ AKVTEEENTS SGADASSASD 2050
TTVKQNPDNT GPALEWDNYD LREDALDDSV SSSSVHASPL ASSPVRKNLF 2100
RFGESTTGFN FSFKSALSPS KSPAKLNQSG TSVGTDEESD VTQEEERDGQ 2150
YFEPVVPLPD LIEVSSGEEN EQVVFSHRAK LYRYDKDVGQ WKERGIGDIK 2200
ILQNYDNKQV RIVMRRDQVL KLCANHRITP DMTLQTMKGT ERVWVWTACD 2250
FADGERKIEH LAVRFKLQDV ADSFKKIFDE AKTAQEKDCL ITPHVSHLST 2300
PRESPCGKIA IAVLEETTRE RTDLTQGDEV VDTTSEAGET SSTSETTPKA 2350
VVSPPKFVFG SESVKSIFSS EKSKPFAFGN SSATGSLFGF SFNAPLKNSN 2400
SEISSIVQSG SEGKVDPDKG ELPPNSDIKQ SSDGKVKNLI AFSKETSSTF 2450
KTPEKAREKN KPEDPPSDTD ILIVYELTPT PEQKALAEKL LLPSTFFCYK 2500
NRPGYVSEEE EDDEDFEMAV KKLNGKLYVD DSEKPLEENL ADNDKECVIV 2550
WEKKPTVEER AKADTLKLPP TFFCGVCSDT DEDNGNGEDF QSELRKVQEA 2600
QKSQSEKVTN TVGIEQTGET EATNPDGSKS EEPDSDTKHS SSSPVPGTMD 2650
KPVDLSTKKE TDMEFPSQGE SKTVLFGFGS GTGLSFADLA SSNSGDFAFG 2700
PKDKNFQWAN TGAAVFGTQS TSKDGDDEDG SDEDVVHNED IHFEPIVSLP 2750
EVEVKSGEED EEVLFKERAK LYRWDRDVSQ WKERGIGDIK ILWHSVKNYY 2800
RILMRRDQVF KVCANHVITK AMELKPLNFS NNALVWTASD YADGEAKIEQ 2850
LAVRFKTKEI TECFKKKIEE CQQNIMKLQN GQVSLAAELS KETNPVVFFD 2900
VCVDGEPLGR IIMELFSNIV PQTAENFRAL CTGEKGFGFK NSIFHRVVPD 2950
FICQGGDITK YNGTGGQSIY GDKFDDENFD LKHTGPGLLS MANCGQNTNS 3000
SQFFITLKKA EHLDFKHVVF GFVKDGMDTV RKIESFGSPK GSVSRRICIT 3050
ECGQL 3055
Length:3,055
Mass (Da):341,033
Last modified:April 20, 2010 - v1
Checksum:iB7F065BEAC73C878
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06100914 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000001044; ENSRNOP00000001044; ENSRNOG00000000796.
UCSCiRGD:1560047. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06100914 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortali D4A054.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi D4A054. 1 interaction.

Proteomic databases

PRIDEi D4A054.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000001044 ; ENSRNOP00000001044 ; ENSRNOG00000000796 .
UCSCi RGD:1560047. rat.

Organism-specific databases

RGDi 6494852. LOC100911178.
1560047. Ranbp2.

Phylogenomic databases

GeneTreei ENSGT00750000117302.
PhylomeDBi D4A054.
TreeFami TF314797.

Enzyme and pathway databases

Reactomei REACT_194781. Separation of Sister Chromatids.
REACT_198363. Nuclear Pore Complex (NPC) Disassembly.
REACT_198611. Resolution of Sister Chromatid Cohesion.

Miscellaneous databases

NextBioi 35571486.

Family and domain databases

Gene3Di 1.25.40.10. 2 hits.
2.30.29.30. 4 hits.
2.40.100.10. 1 hit.
InterProi IPR029000. Cyclophilin-like_dom.
IPR020892. Cyclophilin-type_PPIase_CS.
IPR002130. Cyclophilin-type_PPIase_dom.
IPR022011. IR1-M.
IPR011993. PH_like_dom.
IPR000156. Ran_bind_dom.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR019734. TPR_repeat.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF12185. IR1-M. 2 hits.
PF00160. Pro_isomerase. 1 hit.
PF00638. Ran_BP1. 4 hits.
PF00515. TPR_1. 1 hit.
PF00641. zf-RanBP. 6 hits.
[Graphical view ]
PRINTSi PR00153. CSAPPISMRASE.
SMARTi SM00160. RanBD. 4 hits.
SM00547. ZnF_RBZ. 6 hits.
[Graphical view ]
SUPFAMi SSF50891. SSF50891. 1 hit.
PROSITEi PS00170. CSA_PPIASE_1. 1 hit.
PS50072. CSA_PPIASE_2. 1 hit.
PS50196. RANBD1. 4 hits.
PS50005. TPR. 2 hits.
PS50293. TPR_REGION. 1 hit.
PS01358. ZF_RANBP2_1. 6 hits.
PS50199. ZF_RANBP2_2. 6 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A054_RAT
AccessioniPrimary (citable) accession number: D4A054
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi