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D4A005 (D4A005_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length891 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

S-adenosyl-L-methionine + L-lysine-[histone] = S-adenosyl-L-homocysteine + N(6)-methyl-L-lysine-[histone]. RuleBase RU004542 SAAS SAAS007728

Subcellular location

Nucleus By similarity RuleBase RU004542.

Sequence similarities

Contains 1 SET domain. RuleBase RU004538

Contains 1 pre-SET domain. RuleBase RU004542

Contains 7 ANK repeats. RuleBase RU003321

Contains SET domain. SAAS SAAS001214

Contains pre-SET domain. SAAS SAAS001214

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000063511

Sequences

Sequence LengthMass (Da)Tools
D4A005 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: CB9C0D1FBF9B8D55

FASTA89198,427
        10         20         30         40         50         60 
MSETDRAAKS SESSIKKKFL KRRGKTDSPW IKPARKRRRR SRKKPSSMLG SEACKSSPGS 

        70         80         90        100        110        120 
MEQAALGDSA GYMEVSLDSL DLRVRGILSS QTENEGLANG PDVLETDGLH EVPLCSCRME 

       130        140        150        160        170        180 
TPKSREISTL ANNQCMATES VDHELGRCTN SVVKYELMRP SNKAPLLVLC EDHRGRMVKH 

       190        200        210        220        230        240 
QCCPGCGYFC TAGNFMECQP ESSISHRFHK DCASRVNNAS YCPHCGEETS KAKEVTIAKA 

       250        260        270        280        290        300 
DTTSTVTLAP GQEKSLAAEG RADTTTGSIA GAPEDEKSQS TVTQAPECFD PAGPAGFVRP 

       310        320        330        340        350        360 
TSGFSQGPGK ETLESALIAL DSEKPKKLRF HPKQLYFSAR QGELQKVLLM LVDGIDPNFK 

       370        380        390        400        410        420 
MEHQSKRSPL HAAAEAGHVD ICHMLVQAGA NIDTCSEDQR TPLMEAAENN HLDAVKYLIK 

       430        440        450        460        470        480 
AGAQVDPKDA EGSTCLHLAA KKGHYDVVQY LLSNGQMDVN CQDDGGWTPM IWATEYKHVD 

       490        500        510        520        530        540 
LVKLLLSKGS DINIRDNEEN ICLHWAAFSG CVDIAEILLA AKCDLHAVNI HGDSPLHIAA 

       550        560        570        580        590        600 
RENRYDCVVL FLSRDSDVTL KNKEGETPLQ CASLNSQVWS ALQMSKALQD SAPDKPVAVE 

       610        620        630        640        650        660 
KTVSRDIARG YERIPIPCVN AVDSELCPTN YKYVSQNCVT SPMNIDRNIT HLQYCVCVDD 

       670        680        690        700        710        720 
CSSSTCMCGQ LSMRCWYDKD GRLLPEFNMA EPPLIFECNH ACSCWRNCRN RVVQNGLRAR 

       730        740        750        760        770        780 
LQLYRTQDMG WGVRSLQDIP LGTFVCEYVG ELISDSEADV REEDSYLFDL DNKDGEVYCI 

       790        800        810        820        830        840 
DARFYGNVSR FINHHCEPNL VPVRVFMSHQ DLRFPRIAFF STRLIQAGEQ LGFDYGERFW 

       850        860        870        880        890 
DVKGKLFSCR CGSPKCRHSS AALAQRQASA AQEAQENGLP DTSSAAAADP L 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000063511.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000063511.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06021873 Genomic DNA. No translation available.
AABR06021874 Genomic DNA. No translation available.
AABR06021875 Genomic DNA. No translation available.
AABR06021876 Genomic DNA. No translation available.
AABR06021877 Genomic DNA. No translation available.
AABR06021878 Genomic DNA. No translation available.
AABR06021879 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000066777; ENSRNOP00000063511; ENSRNOG00000007242.

Organism-specific databases

RGD1307588. Ehmt1.

Phylogenomic databases

GeneTreeENSGT00750000117632.
OMASCWRTCK.
OrthoDBEOG744T8D.

Family and domain databases

Gene3D1.25.40.20. 1 hit.
InterProIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR007728. Pre-SET_dom.
IPR003606. Pre-SET_Zn-bd_sub.
IPR001214. SET_dom.
[Graphical view]
PfamPF00023. Ank. 1 hit.
PF12796. Ank_2. 2 hits.
PF05033. Pre-SET. 1 hit.
PF00856. SET. 1 hit.
[Graphical view]
PRINTSPR01415. ANKYRIN.
SMARTSM00248. ANK. 7 hits.
SM00468. PreSET. 1 hit.
SM00317. SET. 1 hit.
[Graphical view]
SUPFAMSSF48403. SSF48403. 1 hit.
PROSITEPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 5 hits.
PS50867. PRE_SET. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio678572.

Entry information

Entry nameD4A005_RAT
AccessionPrimary (citable) accession number: D4A005
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: April 16, 2014
This is version 38 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)