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Protein
Submitted name:

Protein Pigf

Gene

Pigf

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. GPI anchor biosynthetic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_232700. Synthesis of glycosylphosphatidylinositol (GPI).

Names & Taxonomyi

Protein namesi
Submitted name:
Protein PigfImported
Gene namesi
Name:PigfImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 6

Organism-specific databases

RGDi1584658. Pigf.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum membrane Source: Ensembl
  2. integral component of membrane Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000016617.
InParanoidiD3ZZU7.
KOiK05287.
OMAiNGAMSIW.
OrthoDBiEOG76HQ2X.
TreeFamiTF323878.

Family and domain databases

InterProiIPR009580. GPI_biosynthesis_protein_Pig-F.
[Graphical view]
PANTHERiPTHR15095. PTHR15095. 1 hit.
PfamiPF06699. PIG-F. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZZU7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKDTDIKRLL YTNLLCIFSV FLSIFIPSFF LDNFSILETH LVWLGTCSAF
60 70 80 90 100
VTGANLLLYL VVKPNVSSKR SSLSHKVARV VRCWLYFLAS CFFLHIIFVL
110 120 130 140 150
YGAPLMELVL ETFLFAVVLS TFTTVPCLCL LGPNLKAWLR VFSRNGVTSV
160 170 180 190 200
WENSLQITTV SSFIGAWLGA FPIPLDWERP WQVWPISCTF GATFGYVAGL
210
VISPLWIYWN RKQLTYKNN
Length:219
Mass (Da):25,016
Last modified:April 3, 2013 - v2
Checksum:i58BF0CB13D61F823
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06041745 Genomic DNA. No translation available.
RefSeqiXP_006239787.1. XM_006239725.2.

Genome annotation databases

EnsembliENSRNOT00000020600; ENSRNOP00000020600; ENSRNOG00000015325.
GeneIDi681086.
KEGGirno:681086.
UCSCiRGD:1584658. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06041745 Genomic DNA. No translation available.
RefSeqiXP_006239787.1. XM_006239725.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000020600; ENSRNOP00000020600; ENSRNOG00000015325.
GeneIDi681086.
KEGGirno:681086.
UCSCiRGD:1584658. rat.

Organism-specific databases

CTDi5281.
RGDi1584658. Pigf.

Phylogenomic databases

GeneTreeiENSGT00390000016617.
InParanoidiD3ZZU7.
KOiK05287.
OMAiNGAMSIW.
OrthoDBiEOG76HQ2X.
TreeFamiTF323878.

Enzyme and pathway databases

ReactomeiREACT_232700. Synthesis of glycosylphosphatidylinositol (GPI).

Miscellaneous databases

NextBioi34023290.
PROiD3ZZU7.

Family and domain databases

InterProiIPR009580. GPI_biosynthesis_protein_Pig-F.
[Graphical view]
PANTHERiPTHR15095. PTHR15095. 1 hit.
PfamiPF06699. PIG-F. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZZU7_RAT
AccessioniPrimary (citable) accession number: D3ZZU7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: January 7, 2015
This is version 42 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.