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D3ZZU7

- D3ZZU7_RAT

UniProt

D3ZZU7 - D3ZZU7_RAT

Protein
Submitted name:

Protein Pigf

Gene

Pigf

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. GPI anchor biosynthetic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein PigfImported
    Gene namesi
    Name:PigfImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 6

    Organism-specific databases

    RGDi1584658. Pigf.

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum membrane Source: Ensembl
    2. integral component of membrane Source: InterPro

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000016617.
    KOiK05287.
    OMAiFSVYGTH.
    OrthoDBiEOG76HQ2X.
    TreeFamiTF323878.

    Family and domain databases

    InterProiIPR009580. GPI_biosynthesis_protein_Pig-F.
    [Graphical view]
    PANTHERiPTHR15095. PTHR15095. 1 hit.
    PfamiPF06699. PIG-F. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZZU7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKDTDIKRLL YTNLLCIFSV FLSIFIPSFF LDNFSILETH LVWLGTCSAF    50
    VTGANLLLYL VVKPNVSSKR SSLSHKVARV VRCWLYFLAS CFFLHIIFVL 100
    YGAPLMELVL ETFLFAVVLS TFTTVPCLCL LGPNLKAWLR VFSRNGVTSV 150
    WENSLQITTV SSFIGAWLGA FPIPLDWERP WQVWPISCTF GATFGYVAGL 200
    VISPLWIYWN RKQLTYKNN 219
    Length:219
    Mass (Da):25,016
    Last modified:April 3, 2013 - v2
    Checksum:i58BF0CB13D61F823
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06041745 Genomic DNA. No translation available.
    RefSeqiXP_006239787.1. XM_006239725.1.

    Genome annotation databases

    EnsembliENSRNOT00000020600; ENSRNOP00000020600; ENSRNOG00000015325.
    GeneIDi681086.
    KEGGirno:681086.
    UCSCiRGD:1584658. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06041745 Genomic DNA. No translation available.
    RefSeqi XP_006239787.1. XM_006239725.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000020600 ; ENSRNOP00000020600 ; ENSRNOG00000015325 .
    GeneIDi 681086.
    KEGGi rno:681086.
    UCSCi RGD:1584658. rat.

    Organism-specific databases

    CTDi 5281.
    RGDi 1584658. Pigf.

    Phylogenomic databases

    GeneTreei ENSGT00390000016617.
    KOi K05287.
    OMAi FSVYGTH.
    OrthoDBi EOG76HQ2X.
    TreeFami TF323878.

    Miscellaneous databases

    NextBioi 34023290.
    PROi D3ZZU7.

    Family and domain databases

    InterProi IPR009580. GPI_biosynthesis_protein_Pig-F.
    [Graphical view ]
    PANTHERi PTHR15095. PTHR15095. 1 hit.
    Pfami PF06699. PIG-F. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZZU7_RAT
    AccessioniPrimary (citable) accession number: D3ZZU7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 39 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3