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D3ZYY8

- D3ZYY8_RAT

UniProt

D3ZYY8 - D3ZYY8_RAT

Protein
Submitted name:

Protein Pigb

Gene

Pigb

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. mannosyltransferase activity Source: Ensembl

    GO - Biological processi

    1. GPI anchor biosynthetic process Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein PigbImported
    Gene namesi
    Name:PigbImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 8

    Organism-specific databases

    RGDi1307251. Pigb.

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum membrane Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiD3ZYY8.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00550000075012.
    KOiK05286.
    OMAiGIRSYVY.
    OrthoDBiEOG761BV9.
    TreeFamiTF313518.

    Family and domain databases

    InterProiIPR005599. GPI_mannosylTrfase.
    [Graphical view]
    PANTHERiPTHR22760. PTHR22760. 1 hit.
    PfamiPF03901. Glyco_transf_22. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZYY8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEPETRDHST AFRNLHSSSG EMKLRKRKST QYVIAQEKRS RRRDLLGENT    50
    YLVLFTIALR IFNCFLVQTS FVPDEYWQSL EVAHHMVFGY GYLTWEWTER 100
    LRGYTYPLIF ASIYKILHLL GKDSVQLLIW IPRLGQALLS AVADLRLYSL 150
    TKQLENQEVA RWVFFCQLCS WFTWYCCTRT LTNTMETALT AVALFYYPLE 200
    GSRSKNSVKY SLLVALACVV RPTALIPWVP LLFRHLYQEQ RKLHLTLHHF 250
    LPVGFITFSL SLIIDRIFFG QWTLVQFNFL KFNVLQNLGT FYGSHPWHWY 300
    FSQGFPVVLG THLPFFIHGC FLAPRRLNIL LLAVLWTLLV YSMLGHKEFR 350
    FIYPVLPFCM VFCGYSLAHL KAWRKAALSF LLLSNVLLAL YTGLVHQRGT 400
    LDVMSHIQKV CPRGPDPAPA SVFIMMPCHS TPYYSHVHCP LSMRFLQCPP 450
    DLTGKTQYLD EADTFYLNPL GWLQQEFHSN VSLPTHLVTF NVLEKEIHAF 500
    LTSGNYERTA TFFHTHWPER RTGSHIHVYE RRLTSRVSTG GN 542
    Length:542
    Mass (Da):63,206
    Last modified:April 3, 2013 - v2
    Checksum:iD496C96109455A25
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06055475 Genomic DNA. No translation available.
    AABR06055476 Genomic DNA. No translation available.
    RefSeqiNP_001101636.3. NM_001108166.3.
    UniGeneiRn.231128.

    Genome annotation databases

    EnsembliENSRNOT00000009872; ENSRNOP00000009872; ENSRNOG00000007471.
    GeneIDi315807.
    KEGGirno:315807.
    UCSCiRGD:1307251. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06055475 Genomic DNA. No translation available.
    AABR06055476 Genomic DNA. No translation available.
    RefSeqi NP_001101636.3. NM_001108166.3.
    UniGenei Rn.231128.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi D3ZYY8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000009872 ; ENSRNOP00000009872 ; ENSRNOG00000007471 .
    GeneIDi 315807.
    KEGGi rno:315807.
    UCSCi RGD:1307251. rat.

    Organism-specific databases

    CTDi 9488.
    RGDi 1307251. Pigb.

    Phylogenomic databases

    GeneTreei ENSGT00550000075012.
    KOi K05286.
    OMAi GIRSYVY.
    OrthoDBi EOG761BV9.
    TreeFami TF313518.

    Miscellaneous databases

    NextBioi 35571228.

    Family and domain databases

    InterProi IPR005599. GPI_mannosylTrfase.
    [Graphical view ]
    PANTHERi PTHR22760. PTHR22760. 1 hit.
    Pfami PF03901. Glyco_transf_22. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZYY8_RAT
    AccessioniPrimary (citable) accession number: D3ZYY8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 35 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3