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Protein
Submitted name:

Leucine rich repeat containing 4C (Predicted), isoform CRA_a

Gene

Lrrc4c

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Leucine rich repeat containing 4C (Predicted), isoform CRA_aImported
Submitted name:
Leucine-rich repeat-containing 4CImported
Gene namesi
Name:Lrrc4cImported
Synonyms:Lrrc4c_predictedImported
ORF Names:rCG_27044Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1311013. Lrrc4c.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei528 – 548HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 44Sequence analysisAdd BLAST44
ChainiPRO_501120516845 – 640Sequence analysisAdd BLAST596

Keywords - PTMi

Disulfide bondSAAS annotation

Expressioni

Gene expression databases

BgeeiENSRNOG00000029798.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000044234.

Structurei

3D structure databases

SMRiD3ZXT1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini354 – 442Ig-likeInterPro annotationAdd BLAST89

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00760000118831.
KOiK07523.
OMAiIMTHGAY.
OrthoDBiEOG091G037N.
TreeFamiTF324303.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.80.10.10. 1 hit.
InterProiView protein in InterPro
IPR007110. Ig-like_dom.
IPR036179. Ig-like_dom_sf.
IPR013783. Ig-like_fold.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
IPR013106. Ig_V-set.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR026906. LRR_5.
IPR032675. LRR_dom_sf.
IPR026878. LRRC4C.
IPR000372. LRRNT.
PANTHERiPTHR24369:SF8. PTHR24369:SF8. 1 hit.
PfamiView protein in Pfam
PF07679. I-set. 1 hit.
PF13306. LRR_5. 1 hit.
PF13855. LRR_8. 1 hit.
SMARTiView protein in SMART
SM00409. IG. 1 hit.
SM00408. IGc2. 1 hit.
SM00406. IGv. 1 hit.
SM00369. LRR_TYP. 8 hits.
SM00013. LRRNT. 1 hit.
SUPFAMiSSF48726. SSF48726. 1 hit.
SSF52058. SSF52058. 1 hit.
PROSITEiView protein in PROSITE
PS50835. IG_LIKE. 1 hit.
PS51450. LRR. 7 hits.

Sequencei

Sequence statusi: Complete.

D3ZXT1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNKMTLHPQ QIMIGPRFNR ALFDPLLVVL LALQLLVVAG LVRAQTCPSV
60 70 80 90 100
CSCSNQFSKV ICVRKNLREV PDGISTNTRL LNLHENQIQI IKVNSFKHLR
110 120 130 140 150
HLEILQLSRN HIRTIEIGAF NGLANLNTLE LFDNRLTTIP NGAFVYLSKL
160 170 180 190 200
KELWLRNNPI ESIPSYAFNR IPSLRRLDLG ELKRLSYISE GAFEGLSNLR
210 220 230 240 250
YLNLAMCNLR EIPNLTPLIK LDELDLSGNH LSAIRPGSFQ GLMHLQKLWM
260 270 280 290 300
IQSQIQVIER NAFDNLQSLV EINLAHNNLT LLPHDLFTPL HHLERIHLHH
310 320 330 340 350
NPWNCNCDIL WLSWWIRDMA PSNTACCARC NTPPNLKGRY IGELDQNYFT
360 370 380 390 400
CYAPVIVEPP ADLNVTEGMA AELKCRASTS LTSVSWITPN GTVMTHGAYK
410 420 430 440 450
VRIAVLSDGT LNFTNVTVQD TGMYTCMVSN SVGNTTASAT LNVTAATTTP
460 470 480 490 500
FSYFSTVTVE TMEPSQDEAR TTDNNVGPTP VIDWETTNVT TSLTPQSTRS
510 520 530 540 550
TEKTFTIPVT DINSGIPGID EVMKTTKIII GCFVAITLMA AVMLVIFYKM
560 570 580 590 600
RKQHHRQNHH APTRTVEIIN VDDEITGDTP MESHLPMPAI EHEHLNHYNS
610 620 630 640
YKSPFNHTTT VNTINSIHSS VHEPLLIRMN SKDNVQETQI
Length:640
Mass (Da):71,992
Last modified:April 20, 2010 - v1
Checksum:i9810515A995CAB6B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07052952 Genomic DNA. No translation available.
AABR07052953 Genomic DNA. No translation available.
AABR07052954 Genomic DNA. No translation available.
AABR07052955 Genomic DNA. No translation available.
AABR07052956 Genomic DNA. No translation available.
AABR07052957 Genomic DNA. No translation available.
AABR07052958 Genomic DNA. No translation available.
AABR07052959 Genomic DNA. No translation available.
AABR07052960 Genomic DNA. No translation available.
AABR07052961 Genomic DNA. No translation available.
CH473949 Genomic DNA. Translation: EDL79615.1.
CH473949 Genomic DNA. Translation: EDL79616.1.
RefSeqiNP_001101223.1. NM_001107753.1.
XP_017447211.1. XM_017591722.1.
XP_017447212.1. XM_017591723.1.
XP_017447213.1. XM_017591724.1.
XP_017447214.1. XM_017591725.1.
XP_017447215.1. XM_017591726.1.
XP_017447216.1. XM_017591727.1.
XP_017447217.1. XM_017591728.1.
XP_017447218.1. XM_017591729.1.
XP_017447219.1. XM_017591730.1.
UniGeneiRn.219303.

Genome annotation databases

EnsembliENSRNOT00000044595; ENSRNOP00000044234; ENSRNOG00000029798.
GeneIDi311236.
KEGGirno:311236.
UCSCiRGD:1311013. rat.

Similar proteinsi

Entry informationi

Entry nameiD3ZXT1_RAT
AccessioniPrimary (citable) accession number: D3ZXT1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: December 20, 2017
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported