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Protein
Submitted name:

Protein Vom2r16

Gene

Vom2r16

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptorSAAS annotation, Receptor, Transducer

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Vom2r16Imported
Gene namesi
Name:Vom2r16Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Unassembled WGS sequence

Organism-specific databases

RGDi1593384. Vom2r16.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membraneSAAS annotation, Membrane

Structurei

3D structure databases

ProteinModelPortaliD3ZX78.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotation

Phylogenomic databases

TreeFamiTF340115.

Family and domain databases

InterProiIPR001828. ANF_lig-bd_rcpt.
IPR000337. GPCR_3.
IPR011500. GPCR_3_9-Cys_dom.
IPR017978. GPCR_3_C.
IPR004073. GPCR_3_vmron_rcpt_2.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF00003. 7tm_3. 1 hit.
PF01094. ANF_receptor. 1 hit.
PF07562. NCD3G. 1 hit.
[Graphical view]
PRINTSiPR00248. GPCRMGR.
PR01535. VOMERONASL2R.
SUPFAMiSSF53822. SSF53822. 1 hit.
PROSITEiPS50259. G_PROTEIN_RECEP_F3_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZX78-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHTLILFFLL LNIPLLVVSL IHPRCFWRMK QNEEKNGNLK TGCIFAFGVV
60 70 80 90 100
KWPVEKEYYY NILSTQTNTE NHQFSLALAF SMDEINKNPD LLPNKSLLFD
110 120 130 140 150
FPFYSCKSHS ELTTLIHGSV QQYDIFPNYV CNNETMCTLL LTGPNWKISV
160 170 180 190 200
ILRTYLDLYK SQQFLQLTYG PFHPVLSDNE QFPYLYQMAP KETSLALALV
210 220 230 240 250
SFLIHFSWNW IGLAISDNDQ GNQFLSYLRT EMGKYTVCFA FVNMIPVNMQ
260 270 280 290 300
LFMTRTDVYY NQIITSSTNV VIVYGDTDST LALGFKMWKS LGVQRIWVTT
310 320 330 340 350
SEWDVITSKR DFTFDTFHSI IAFQHHHGEI SGFKNFVQTL NPFKYSDKYL
360 370 380 390 400
VKLEWMYFNC EISASNCKTL KNCLYNESFE WLSEQTFDMA FSDGTHDIYN
410 420 430 440 450
AAYAVAHALH EFFLQQGDNQ QKYRGKWPNS VCLKLHSLLK KTHFTNPVGD
460 470 480 490 500
RVIMNQREKM QEEYDIFYIW NFPQGLGLKV KIGEFSPYYS SGKQLWLFED
510 520 530 540 550
MIEWTTGNRQ MPSSVCNSDC GPGFRKIWKE GMSTCCFDCI HCQENEISNE
560 570 580 590 600
TNVDQCVKCP EDQYANPEQN HCIHKALIFL TYQETLGMTL SLVALCLSTL
610 620 630 640 650
TAAILGVFVK YHTTPIVKAN NCRLTYILLI TLIFCFLCPL LYIGHPNSVT
660 670 680 690 700
CVLQQVTFGI VFTVAISTVL AKTITVILAF KVTAPQRMIK YFLISGVFNY
710 720 730 740 750
IIPICTLIQV FVCTLWLGTS PPSVDFDPQS EHGHIIIVCN KGSVTAFYCM
760 770 780 790 800
LGYLSCLALG SFTLAFLSRN LPGTFNEAKF LTFSMLVFCS VWITFLPVYH
810 820 830 840
STKGKVMVAV EIFSTLASSA GMLGCIFIPK CYIILLRPER NSLQX
Length:845
Mass (Da):96,903
Last modified:April 3, 2013 - v2
Checksum:iFEA78FED67436B79
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06003003 Genomic DNA. No translation available.
AABR06003004 Genomic DNA. No translation available.
AABR06003005 Genomic DNA. No translation available.
AABR06003006 Genomic DNA. No translation available.
AABR06003007 Genomic DNA. No translation available.
AABR06003008 Genomic DNA. No translation available.
AABR06003009 Genomic DNA. No translation available.
AABR06003010 Genomic DNA. No translation available.
AABR06003011 Genomic DNA. No translation available.
AABR06003012 Genomic DNA. No translation available.
AABR06003013 Genomic DNA. No translation available.
AABR06003014 Genomic DNA. No translation available.
AABR06003015 Genomic DNA. No translation available.
AABR06003016 Genomic DNA. No translation available.
AABR06003017 Genomic DNA. No translation available.
AABR06003018 Genomic DNA. No translation available.
AABR06003019 Genomic DNA. No translation available.
AABR06003020 Genomic DNA. No translation available.
AABR06003021 Genomic DNA. No translation available.
AABR06003022 Genomic DNA. No translation available.
AABR06003023 Genomic DNA. No translation available.
AABR06003024 Genomic DNA. No translation available.
AABR06003025 Genomic DNA. No translation available.
AABR06003026 Genomic DNA. No translation available.
AABR06003027 Genomic DNA. No translation available.
AABR06003028 Genomic DNA. No translation available.
AABR06003029 Genomic DNA. No translation available.
AABR06003030 Genomic DNA. No translation available.
AABR06003031 Genomic DNA. No translation available.
AABR06003032 Genomic DNA. No translation available.
AABR06003033 Genomic DNA. No translation available.
AABR06003034 Genomic DNA. No translation available.
AABR06003035 Genomic DNA. No translation available.
AABR06003036 Genomic DNA. No translation available.
AABR06003037 Genomic DNA. No translation available.
AABR06003038 Genomic DNA. No translation available.
AABR06003039 Genomic DNA. No translation available.
AABR06003040 Genomic DNA. No translation available.
AABR06003041 Genomic DNA. No translation available.
AABR06003042 Genomic DNA. No translation available.
AABR06003043 Genomic DNA. No translation available.
AABR06003044 Genomic DNA. No translation available.
AABR06003045 Genomic DNA. No translation available.
AABR06003046 Genomic DNA. No translation available.
AABR06003047 Genomic DNA. No translation available.
AABR06003048 Genomic DNA. No translation available.
AABR06003049 Genomic DNA. No translation available.
AABR06003050 Genomic DNA. No translation available.
AABR06003051 Genomic DNA. No translation available.
AABR06003052 Genomic DNA. No translation available.
AABR06003053 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000059506; ENSRNOP00000056264; ENSRNOG00000049871.
UCSCiRGD:1593384. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06003003 Genomic DNA. No translation available.
AABR06003004 Genomic DNA. No translation available.
AABR06003005 Genomic DNA. No translation available.
AABR06003006 Genomic DNA. No translation available.
AABR06003007 Genomic DNA. No translation available.
AABR06003008 Genomic DNA. No translation available.
AABR06003009 Genomic DNA. No translation available.
AABR06003010 Genomic DNA. No translation available.
AABR06003011 Genomic DNA. No translation available.
AABR06003012 Genomic DNA. No translation available.
AABR06003013 Genomic DNA. No translation available.
AABR06003014 Genomic DNA. No translation available.
AABR06003015 Genomic DNA. No translation available.
AABR06003016 Genomic DNA. No translation available.
AABR06003017 Genomic DNA. No translation available.
AABR06003018 Genomic DNA. No translation available.
AABR06003019 Genomic DNA. No translation available.
AABR06003020 Genomic DNA. No translation available.
AABR06003021 Genomic DNA. No translation available.
AABR06003022 Genomic DNA. No translation available.
AABR06003023 Genomic DNA. No translation available.
AABR06003024 Genomic DNA. No translation available.
AABR06003025 Genomic DNA. No translation available.
AABR06003026 Genomic DNA. No translation available.
AABR06003027 Genomic DNA. No translation available.
AABR06003028 Genomic DNA. No translation available.
AABR06003029 Genomic DNA. No translation available.
AABR06003030 Genomic DNA. No translation available.
AABR06003031 Genomic DNA. No translation available.
AABR06003032 Genomic DNA. No translation available.
AABR06003033 Genomic DNA. No translation available.
AABR06003034 Genomic DNA. No translation available.
AABR06003035 Genomic DNA. No translation available.
AABR06003036 Genomic DNA. No translation available.
AABR06003037 Genomic DNA. No translation available.
AABR06003038 Genomic DNA. No translation available.
AABR06003039 Genomic DNA. No translation available.
AABR06003040 Genomic DNA. No translation available.
AABR06003041 Genomic DNA. No translation available.
AABR06003042 Genomic DNA. No translation available.
AABR06003043 Genomic DNA. No translation available.
AABR06003044 Genomic DNA. No translation available.
AABR06003045 Genomic DNA. No translation available.
AABR06003046 Genomic DNA. No translation available.
AABR06003047 Genomic DNA. No translation available.
AABR06003048 Genomic DNA. No translation available.
AABR06003049 Genomic DNA. No translation available.
AABR06003050 Genomic DNA. No translation available.
AABR06003051 Genomic DNA. No translation available.
AABR06003052 Genomic DNA. No translation available.
AABR06003053 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliD3ZX78.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000059506; ENSRNOP00000056264; ENSRNOG00000049871.
UCSCiRGD:1593384. rat.

Organism-specific databases

RGDi1593384. Vom2r16.

Phylogenomic databases

TreeFamiTF340115.

Miscellaneous databases

NextBioi35570826.

Family and domain databases

InterProiIPR001828. ANF_lig-bd_rcpt.
IPR000337. GPCR_3.
IPR011500. GPCR_3_9-Cys_dom.
IPR017978. GPCR_3_C.
IPR004073. GPCR_3_vmron_rcpt_2.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF00003. 7tm_3. 1 hit.
PF01094. ANF_receptor. 1 hit.
PF07562. NCD3G. 1 hit.
[Graphical view]
PRINTSiPR00248. GPCRMGR.
PR01535. VOMERONASL2R.
SUPFAMiSSF53822. SSF53822. 1 hit.
PROSITEiPS50259. G_PROTEIN_RECEP_F3_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZX78_RAT
AccessioniPrimary (citable) accession number: D3ZX78
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: July 22, 2015
This is version 44 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.