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D3ZX78 (D3ZX78_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length845 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000056264

Sequences

Sequence LengthMass (Da)Tools
D3ZX78 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: FEA78FED67436B79

FASTA84596,903
        10         20         30         40         50         60 
MHTLILFFLL LNIPLLVVSL IHPRCFWRMK QNEEKNGNLK TGCIFAFGVV KWPVEKEYYY 

        70         80         90        100        110        120 
NILSTQTNTE NHQFSLALAF SMDEINKNPD LLPNKSLLFD FPFYSCKSHS ELTTLIHGSV 

       130        140        150        160        170        180 
QQYDIFPNYV CNNETMCTLL LTGPNWKISV ILRTYLDLYK SQQFLQLTYG PFHPVLSDNE 

       190        200        210        220        230        240 
QFPYLYQMAP KETSLALALV SFLIHFSWNW IGLAISDNDQ GNQFLSYLRT EMGKYTVCFA 

       250        260        270        280        290        300 
FVNMIPVNMQ LFMTRTDVYY NQIITSSTNV VIVYGDTDST LALGFKMWKS LGVQRIWVTT 

       310        320        330        340        350        360 
SEWDVITSKR DFTFDTFHSI IAFQHHHGEI SGFKNFVQTL NPFKYSDKYL VKLEWMYFNC 

       370        380        390        400        410        420 
EISASNCKTL KNCLYNESFE WLSEQTFDMA FSDGTHDIYN AAYAVAHALH EFFLQQGDNQ 

       430        440        450        460        470        480 
QKYRGKWPNS VCLKLHSLLK KTHFTNPVGD RVIMNQREKM QEEYDIFYIW NFPQGLGLKV 

       490        500        510        520        530        540 
KIGEFSPYYS SGKQLWLFED MIEWTTGNRQ MPSSVCNSDC GPGFRKIWKE GMSTCCFDCI 

       550        560        570        580        590        600 
HCQENEISNE TNVDQCVKCP EDQYANPEQN HCIHKALIFL TYQETLGMTL SLVALCLSTL 

       610        620        630        640        650        660 
TAAILGVFVK YHTTPIVKAN NCRLTYILLI TLIFCFLCPL LYIGHPNSVT CVLQQVTFGI 

       670        680        690        700        710        720 
VFTVAISTVL AKTITVILAF KVTAPQRMIK YFLISGVFNY IIPICTLIQV FVCTLWLGTS 

       730        740        750        760        770        780 
PPSVDFDPQS EHGHIIIVCN KGSVTAFYCM LGYLSCLALG SFTLAFLSRN LPGTFNEAKF 

       790        800        810        820        830        840 
LTFSMLVFCS VWITFLPVYH STKGKVMVAV EIFSTLASSA GMLGCIFIPK CYIILLRPER 


NSLQX 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000056264.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000056264.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06003003 Genomic DNA. No translation available.
AABR06003004 Genomic DNA. No translation available.
AABR06003005 Genomic DNA. No translation available.
AABR06003006 Genomic DNA. No translation available.
AABR06003007 Genomic DNA. No translation available.
AABR06003008 Genomic DNA. No translation available.
AABR06003009 Genomic DNA. No translation available.
AABR06003010 Genomic DNA. No translation available.
AABR06003011 Genomic DNA. No translation available.
AABR06003012 Genomic DNA. No translation available.
AABR06003013 Genomic DNA. No translation available.
AABR06003014 Genomic DNA. No translation available.
AABR06003015 Genomic DNA. No translation available.
AABR06003016 Genomic DNA. No translation available.
AABR06003017 Genomic DNA. No translation available.
AABR06003018 Genomic DNA. No translation available.
AABR06003019 Genomic DNA. No translation available.
AABR06003020 Genomic DNA. No translation available.
AABR06003021 Genomic DNA. No translation available.
AABR06003022 Genomic DNA. No translation available.
AABR06003023 Genomic DNA. No translation available.
AABR06003024 Genomic DNA. No translation available.
AABR06003025 Genomic DNA. No translation available.
AABR06003026 Genomic DNA. No translation available.
AABR06003027 Genomic DNA. No translation available.
AABR06003028 Genomic DNA. No translation available.
AABR06003029 Genomic DNA. No translation available.
AABR06003030 Genomic DNA. No translation available.
AABR06003031 Genomic DNA. No translation available.
AABR06003032 Genomic DNA. No translation available.
AABR06003033 Genomic DNA. No translation available.
AABR06003034 Genomic DNA. No translation available.
AABR06003035 Genomic DNA. No translation available.
AABR06003036 Genomic DNA. No translation available.
AABR06003037 Genomic DNA. No translation available.
AABR06003038 Genomic DNA. No translation available.
AABR06003039 Genomic DNA. No translation available.
AABR06003040 Genomic DNA. No translation available.
AABR06003041 Genomic DNA. No translation available.
AABR06003042 Genomic DNA. No translation available.
AABR06003043 Genomic DNA. No translation available.
AABR06003044 Genomic DNA. No translation available.
AABR06003045 Genomic DNA. No translation available.
AABR06003046 Genomic DNA. No translation available.
AABR06003047 Genomic DNA. No translation available.
AABR06003048 Genomic DNA. No translation available.
AABR06003049 Genomic DNA. No translation available.
AABR06003050 Genomic DNA. No translation available.
AABR06003051 Genomic DNA. No translation available.
AABR06003052 Genomic DNA. No translation available.
AABR06003053 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000059506; ENSRNOP00000056264; ENSRNOG00000049871.
UCSCRGD:1593384. rat.

Organism-specific databases

RGD1593384. Vom2r16.

Phylogenomic databases

GeneTreeENSGT00740000115606.
TreeFamTF340115.

Family and domain databases

InterProIPR001828. ANF_lig-bd_rcpt.
IPR000337. GPCR_3.
IPR011500. GPCR_3_9-Cys_dom.
IPR017978. GPCR_3_C.
IPR004073. GPCR_3_vmron_rcpt_2.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamPF00003. 7tm_3. 1 hit.
PF01094. ANF_receptor. 1 hit.
PF07562. NCD3G. 1 hit.
[Graphical view]
PRINTSPR00248. GPCRMGR.
PR01535. VOMERONASL2R.
SUPFAMSSF53822. SSF53822. 1 hit.
PROSITEPS50259. G_PROTEIN_RECEP_F3_4. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35570826.

Entry information

Entry nameD3ZX78_RAT
AccessionPrimary (citable) accession number: D3ZX78
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: March 19, 2014
This is version 34 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)