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Protein
Submitted name:

Protein Sncaip

Gene

Sncaip

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein SncaipImported
Submitted name:
Synuclein, alpha interacting protein (Synphilin) (Predicted), isoform CRA_aImported
Gene namesi
Name:SncaipImported
Synonyms:Sncaip_predictedImported
ORF Names:rCG_46654Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1309283. Sncaip.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

IntActiD3ZWQ5. 2 interactions.
STRINGi10116.ENSRNOP00000025119.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini348 – 509162ANK_REP_REGIONInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ANK repeat.UniRule annotation

Keywords - Domaini

ANK repeatUniRule annotation

Phylogenomic databases

eggNOGiKOG0504. Eukaryota.
COG0666. LUCA.
GeneTreeiENSGT00390000001485.
KOiK04558.
OMAiQWKSPDA.
OrthoDBiEOG7Q8CMH.
PhylomeDBiD3ZWQ5.
TreeFamiTF329095.

Family and domain databases

Gene3Di1.25.40.20. 1 hit.
InterProiIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR032027. SNCAIP_SNCA-bd.
[Graphical view]
PfamiPF12796. Ank_2. 2 hits.
PF16700. SNCAIP_SNCA_bd. 1 hit.
[Graphical view]
SMARTiSM00248. ANK. 4 hits.
[Graphical view]
SUPFAMiSSF48403. SSF48403. 1 hit.
PROSITEiPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZWQ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAPEYLDLD EIDFSDDISY SVTSLKTIPA LCRRCDSQNE DRPVSSSSWN
60 70 80 90 100
CGVSTLITNP QKPTGIADVY SKFRPVKRVS PLKHQPETLE SNESDDQKNN
110 120 130 140 150
TVEYQKGGET DQGPQPEELS PEDGVGGLPG KGSEPSQALG ELEHYDLDMD
160 170 180 190 200
EILDVPYIKS SQQLAPLTKV TSEKRILGLC TTVNGLSAKT CPIVSAETST
210 220 230 240 250
PNMAPLCVLS PVKSPHLRKV PSVLRDQHKL PAEESENSPA PGKCGPAFES
260 270 280 290 300
ENHSKDFLNK VFSDPHSRKA EKSGPDCKLR PFRLQTSAAG AKPEEQVNGV
310 320 330 340 350
SWASAQGAEE RTEYLQKVRS ILNIVNEGQI SLLPHLAADN LDKIHDENGN
360 370 380 390 400
NLLHVAASKG HAECLQHLTS LMGEDCLNER NAEQLTPAGL AIKNGQLECV
410 420 430 440 450
RWMVSETEAI AELSCSKDFP SLIHYAGCYG QEKILLWLLQ FMQEQGISLD
460 470 480 490 500
EVDQEGNSAV HVASQHGYLG CIQTLVEYGA NVTMQNHAGE KPSQSAERHG
510 520 530 540 550
HTLCSRYLVV VETCMSLASQ VVKLTKQLKE QTVERVTLQS QLQQLLEAQK
560 570 580 590 600
SEGKSLPSSP SSPSSPASRK SQWKILDADD ESTGKSKLGT QEGIQVLGNL
610 620 630 640 650
SSRARTKGKD EDSDKILRQL LGKEISENVC TQEKLSLEFQ DAQVSSRNSK
660 670 680 690 700
KIPLEKRELK LARLRQLMQR SLSESDTDSN NSEDPKNTPV KRVDRPRPQP
710 720 730 740 750
IVESVENMDS AESLHLMIKK HSVASGRRFP FGMKASKSLD GHSPSPTSES
760 770 780 790 800
SEPDLDSHCP SLGMTPPTQP STEATQCSPD SATAQKVATS PKSALKSPSS
810 820 830 840 850
KRRTSQNSKL RVTFEEPVVQ MEQTSLELNG EKDKERGRAP QRTSESGEQM
860 870 880 890 900
KRPFGTFRSI MESLSGNQNN NNNYQPASQL KTCTLPLTSL GRKTADAKGN
910 920 930 940 950
PVSPASKGKN KAAMYSSCIH LPSNALVEEH LRDYARLNDI KRNTKKTYNV
960
KHIAEPEPKE LFL
Length:963
Mass (Da):105,795
Last modified:April 20, 2010 - v1
Checksum:i0EBCA4B4B1201E7C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07032121 Genomic DNA. No translation available.
AABR07032122 Genomic DNA. No translation available.
AABR07032123 Genomic DNA. No translation available.
CH473971 Genomic DNA. Translation: EDM14452.1.
RefSeqiNP_001100849.1. NM_001107379.1.
XP_006254781.1. XM_006254719.2.
XP_006254782.1. XM_006254720.2.
XP_006254783.1. XM_006254721.2.
UniGeneiRn.199043.

Genome annotation databases

EnsembliENSRNOT00000025119; ENSRNOP00000025119; ENSRNOG00000018254.
ENSRNOT00000082760; ENSRNOP00000068903; ENSRNOG00000018254.
GeneIDi307309.
KEGGirno:307309.
UCSCiRGD:1309283. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07032121 Genomic DNA. No translation available.
AABR07032122 Genomic DNA. No translation available.
AABR07032123 Genomic DNA. No translation available.
CH473971 Genomic DNA. Translation: EDM14452.1.
RefSeqiNP_001100849.1. NM_001107379.1.
XP_006254781.1. XM_006254719.2.
XP_006254782.1. XM_006254720.2.
XP_006254783.1. XM_006254721.2.
UniGeneiRn.199043.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiD3ZWQ5. 2 interactions.
STRINGi10116.ENSRNOP00000025119.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000025119; ENSRNOP00000025119; ENSRNOG00000018254.
ENSRNOT00000082760; ENSRNOP00000068903; ENSRNOG00000018254.
GeneIDi307309.
KEGGirno:307309.
UCSCiRGD:1309283. rat.

Organism-specific databases

CTDi9627.
RGDi1309283. Sncaip.

Phylogenomic databases

eggNOGiKOG0504. Eukaryota.
COG0666. LUCA.
GeneTreeiENSGT00390000001485.
KOiK04558.
OMAiQWKSPDA.
OrthoDBiEOG7Q8CMH.
PhylomeDBiD3ZWQ5.
TreeFamiTF329095.

Family and domain databases

Gene3Di1.25.40.20. 1 hit.
InterProiIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR032027. SNCAIP_SNCA-bd.
[Graphical view]
PfamiPF12796. Ank_2. 2 hits.
PF16700. SNCAIP_SNCA_bd. 1 hit.
[Graphical view]
SMARTiSM00248. ANK. 4 hits.
[Graphical view]
SUPFAMiSSF48403. SSF48403. 1 hit.
PROSITEiPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.
  5. Ensembl
    Submitted (JUN-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZWQ5_RAT
AccessioniPrimary (citable) accession number: D3ZWQ5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: June 8, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.