Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Protein Kifap3

Gene

Kifap3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

ReactomeiR-RNO-2132295. MHC class II antigen presentation.
R-RNO-5620924. Intraflagellar transport.
R-RNO-6811434. COPI-dependent Golgi-to-ER retrograde traffic.
R-RNO-983189. Kinesins.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Kifap3Imported
Gene namesi
Name:Kifap3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi1305191. Kifap3.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei147 – 17024HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiD3ZWA5.
PeptideAtlasiD3ZWA5.

Expressioni

Gene expression databases

ExpressionAtlasiD3ZWA5. baseline and differential.
GenevisibleiD3ZWA5. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000063896.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1222. Eukaryota.
ENOG410XT8I. LUCA.
GeneTreeiENSGT00390000003574.
InParanoidiD3ZWA5.
OrthoDBiEOG7B5WVK.

Family and domain databases

Gene3Di1.25.10.10. 2 hits.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR000225. Armadillo.
IPR008658. KAP3.
[Graphical view]
PANTHERiPTHR15605. PTHR15605. 1 hit.
SMARTiSM00185. ARM. 3 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
PROSITEiPS50176. ARM_REPEAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZWA5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQSEDARYLK SIRLKSLNAN TDITSLARKV VEECKLIHPS KLNEVEQLLY
60 70 80 90 100
YLQNRRDSLS GKEKKEKSSK PKDPPPFEGM EIDEVANIND MDEYIELLYE
110 120 130 140 150
DLPDKVRGSA LILQLARNPD NLEELLLNEP APGALARILR EDWKQSVELA
160 170 180 190 200
TIIIYIFFCF SSFSHFHGLI THYKIGALCM NIIDHELKRH ELWQEELSKK
210 220 230 240 250
KKAVDEDLEN QTLRKDYDKT FKKYQGLVVK QEQLLRVALY LLLNLAEDTR
260 270 280 290 300
TELKMRNKNI VHMLVKALDR DNFELLILVV SFLKKLSIFM ENKNDMVEMD
310 320 330 340 350
IVEKLVKMIP CEHEDLLNIT LRLLLNLSFD TGLRNKMVQV GLLPKLTALL
360 370 380 390 400
GNENYKQIAM CVLYHISMDD RFKSMFAYTD CIPQLMKMLF ECSDERIDLE
410 420 430 440 450
LISFCINLAA NKRNVQLICE GNGLKMLMKR ALKLKDPLLM KMIRNISQHD
460 470 480 490 500
GPTKNLFIDY VGDLAAQISS DEEEEFVIEC LGTLANLTIP DLDWELVLKE
510 520 530 540 550
YKLVPFLKDK LKPGAAEDDL VLEVVIMIGT VSMDDSCAAL LAKSGIIPAL
560 570 580 590 600
IELLNAQQED DEFVCQIIYV FYQMVFHQAT RDVIIKETQA PAYLIDLMHD
610 620 630 640 650
KNNEIRKVCD NTLDIIAEYD EEWAKKIQSE KFRWHNSQWL EMVESRQMDE
660 670 680 690 700
SEQYLYGDDR IEPYIHEGDI LERPDLFYNS DGLITSEGAL SPDFFNDFHL
710 720
QNGDVVGQHS FPGSTVHPRM SKCFANMH
Length:728
Mass (Da):84,261
Last modified:July 22, 2015 - v3
Checksum:i9D46A151481F747D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07021623 Genomic DNA. No translation available.
AABR07021624 Genomic DNA. No translation available.
AABR07021625 Genomic DNA. No translation available.
AC124874 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000063810; ENSRNOP00000063896; ENSRNOG00000002544.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07021623 Genomic DNA. No translation available.
AABR07021624 Genomic DNA. No translation available.
AABR07021625 Genomic DNA. No translation available.
AC124874 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000063896.

Proteomic databases

PaxDbiD3ZWA5.
PeptideAtlasiD3ZWA5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000063810; ENSRNOP00000063896; ENSRNOG00000002544.

Organism-specific databases

RGDi1305191. Kifap3.

Phylogenomic databases

eggNOGiKOG1222. Eukaryota.
ENOG410XT8I. LUCA.
GeneTreeiENSGT00390000003574.
InParanoidiD3ZWA5.
OrthoDBiEOG7B5WVK.

Enzyme and pathway databases

ReactomeiR-RNO-2132295. MHC class II antigen presentation.
R-RNO-5620924. Intraflagellar transport.
R-RNO-6811434. COPI-dependent Golgi-to-ER retrograde traffic.
R-RNO-983189. Kinesins.

Gene expression databases

ExpressionAtlasiD3ZWA5. baseline and differential.
GenevisibleiD3ZWA5. RN.

Family and domain databases

Gene3Di1.25.10.10. 2 hits.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR000225. Armadillo.
IPR008658. KAP3.
[Graphical view]
PANTHERiPTHR15605. PTHR15605. 1 hit.
SMARTiSM00185. ARM. 3 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
PROSITEiPS50176. ARM_REPEAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.
  3. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiD3ZWA5_RAT
AccessioniPrimary (citable) accession number: D3ZWA5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: July 22, 2015
Last modified: July 6, 2016
This is version 52 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.