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Protein
Submitted name:

Myogenic factor 5 (Predicted)

Gene

Myf5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotation

Enzyme and pathway databases

ReactomeiR-RNO-375170. CDO in myogenesis.

Names & Taxonomyi

Protein namesi
Submitted name:
Myogenic factor 5 (Predicted)Imported
Submitted name:
Protein Myf5Imported
Gene namesi
Name:Myf5Imported
Synonyms:Myf5_predictedImported
ORF Names:rCG_48648Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1308322. Myf5.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

PTM / Processingi

PTM databases

PhosphoSitePlusiD3ZVU3.

Interactioni

Subunit structurei

Efficient DNA binding requires dimerization with another bHLH protein.UniRule annotation

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006453.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini83 – 134BHLH (basic helix-loop-helix)InterPro annotationAdd BLAST52

Sequence similaritiesi

Contains 1 basic helix-loop-helix (bHLH) domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG3960. Eukaryota.
ENOG4111SED. LUCA.
GeneTreeiENSGT00530000063004.
KOiK18484.
OMAiSFDSVYC.
OrthoDBiEOG091G0GKD.
PhylomeDBiD3ZVU3.
TreeFamiTF316344.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR002546. Basic.
IPR011598. bHLH_dom.
IPR022032. Myf5.
[Graphical view]
PfamiPF01586. Basic. 1 hit.
PF00010. HLH. 1 hit.
PF12232. Myf5. 1 hit.
[Graphical view]
SMARTiSM00520. BASIC. 1 hit.
SM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZVU3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDMTDSCQFS PSEYFYDGSC IPSPEDEFGD QFEPRVAAFG AHKAKLQGSD
60 70 80 90 100
DEEHVRAPTG HHQAGHCLMW ACKACKRKST TMDRRKAATM RERRRLKKVN
110 120 130 140 150
QAFETLKRCT TTNPNQRLPK VEILRNAIRY IESLQELLRE QVENYYSLPG
160 170 180 190 200
QSCSQPTSPT SNCSDGMPEC NSPVWSRKNS SFDSIYCPDV SNACASDKSS
210 220 230 240 250
LSSLDCLSSI VDRITSAEPS ELALQDTASL SPAASTNSQP ATPGSSSSRL

IYHVL
Length:255
Mass (Da):28,233
Last modified:April 20, 2010 - v1
Checksum:i367781C202E7DC2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07056975 Genomic DNA. No translation available.
CH473960 Genomic DNA. Translation: EDM16769.1.
RefSeqiNP_001100253.1. NM_001106783.1.
UniGeneiRn.218675.

Genome annotation databases

EnsembliENSRNOT00000006453; ENSRNOP00000006453; ENSRNOG00000004768.
GeneIDi299766.
KEGGirno:299766.
UCSCiRGD:1308322. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07056975 Genomic DNA. No translation available.
CH473960 Genomic DNA. Translation: EDM16769.1.
RefSeqiNP_001100253.1. NM_001106783.1.
UniGeneiRn.218675.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006453.

PTM databases

PhosphoSitePlusiD3ZVU3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000006453; ENSRNOP00000006453; ENSRNOG00000004768.
GeneIDi299766.
KEGGirno:299766.
UCSCiRGD:1308322. rat.

Organism-specific databases

CTDi4617.
RGDi1308322. Myf5.

Phylogenomic databases

eggNOGiKOG3960. Eukaryota.
ENOG4111SED. LUCA.
GeneTreeiENSGT00530000063004.
KOiK18484.
OMAiSFDSVYC.
OrthoDBiEOG091G0GKD.
PhylomeDBiD3ZVU3.
TreeFamiTF316344.

Enzyme and pathway databases

ReactomeiR-RNO-375170. CDO in myogenesis.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR002546. Basic.
IPR011598. bHLH_dom.
IPR022032. Myf5.
[Graphical view]
PfamiPF01586. Basic. 1 hit.
PF00010. HLH. 1 hit.
PF12232. Myf5. 1 hit.
[Graphical view]
SMARTiSM00520. BASIC. 1 hit.
SM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZVU3_RAT
AccessioniPrimary (citable) accession number: D3ZVU3
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 2, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.