D3ZU21 (D3ZU21_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Pibf1 Ensembl ENSRNOP00000037643

Gene names

Name:

Pibf1 Ensembl ENSRNOP00000037643 RGD 1305077

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000037643

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	757 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000037643

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	centrosome Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3ZU21 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 06F1A165903CB7D2	FASTA	757	89,793
	10 20 30 40 50 60 MSRKIAKESK KVNISSSLES EDISLETTIH TDDVSSSEER EGKVKITRQL IERKEILHNI 70 80 90 100 110 120 QLLKIELSQK NMMIDNLKMD YLTKVEELEE KLNDALHQKQ LLTLRLDNQL TIQQKDAKKY 130 140 150 160 170 180 QELMKQEMET ILLRQKQLEE TNHQLREKAG DVRRNLRDLE LTEEQYEKLK SFPEDQLSIP 190 200 210 220 230 240 EFVSIRFYEL VNPLRKEIHE LQVKKNELSE ELSTNKGQLK QLTETYEEAR RNHSELLTRC 250 260 270 280 290 300 QRLALELADT KQLVQQGDYR QENYDKVKSE RDALEQEVLE VRRKHEVLET SHIAQAKERN 310 320 330 340 350 360 ELSKEVSTLQ QTVTLLQKDK EYLNRQNMEL SVRCAHEEDR LERLQVQLEE TKRAREEMYE 370 380 390 400 410 420 KYVTSRDHYK TEYENKLHDE LEQIKLKTNL EIDQLRSASR EMYERENRNL REARDNALAE 430 440 450 460 470 480 KNRAVTAEKD ALEKHEQLLD RYRELQLSTE SKVSEFLHQS KLKSFESERV QLLQEETARN 490 500 510 520 530 540 LTQCQLECEK YQKKLEVLTK EFYSLQASSE KRITELEAQN SEHQARLDIY EKLEKELDEI 550 560 570 580 590 600 IMQTAEIENE DEAERILYSY GYGANVPTTA KRRLKQSVHL ARRVLQLEKQ NSSILKDLDH 610 620 630 640 650 660 QKEEVRQLSQ ELDRANSLLN QSQQPYRYLI ESVRQRDSKI DSLMKCTAQL EKDVSNLNKE 670 680 690 700 710 720 KSALLQTKNQ MALDLEQLLN HREEFAAMKQ IIINMCSKHS ENNLLLTKVE SKSVTENQAS 730 740 750 RPLTMPREHE ENVFIPKPTL FTKKEAQEWP KNQKMKA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000037643.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000037643.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06085099 Genomic DNA. No translation available. AABR06085100 Genomic DNA. No translation available. AABR06085101 Genomic DNA. No translation available. AABR06085102 Genomic DNA. No translation available. AABR06085103 Genomic DNA. No translation available. AABR06085104 Genomic DNA. No translation available. AABR06085105 Genomic DNA. No translation available. AABR06085106 Genomic DNA. No translation available. AABR06085107 Genomic DNA. No translation available. AABR06085108 Genomic DNA. No translation available. AABR06085109 Genomic DNA. No translation available. AABR06085110 Genomic DNA. No translation available. AABR06085111 Genomic DNA. No translation available.
IPI	IPI00373533.
RefSeq	XP_001073989.1. XM_001073989.3. XP_224451.3. XM_224451.6.
3D structure databases
ProteinModelPortal	D3ZU21.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000036350; ENSRNOP00000037643; ENSRNOG00000009208.
GeneID	306104.
KEGG	rno:306104.
UCSC	RGD:1305077. rat.
Organism-specific databases
CTD	10464.
RGD	1305077. Pibf1.
Phylogenomic databases
GeneTree	ENSGT00390000015293.
KO	K16538.
OrthoDB	EOG4320XJ.
Gene expression databases
ArrayExpress	D3ZU21.
Family and domain databases
InterPro	IPR026205. PIBF1. [Graphical view]
PANTHER	PTHR18950. PTHR18950. 1 hit.
ProtoNet	Search...
Other
NextBio	655504.

Entry information

Entry name

D3ZU21_RAT

Accession

Primary (citable) accession number: D3ZU21

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	April 3, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)