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Protein
Submitted name:

Protein Pibf1

Gene

Pibf1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Pibf1Imported
Gene namesi
Name:Pibf1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 15

Organism-specific databases

RGDi1305077. Pibf1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiD3ZU21.

Structurei

3D structure databases

ProteinModelPortaliD3ZU21.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili78 – 10528Sequence analysisAdd
BLAST
Coiled coili128 – 16235Sequence analysisAdd
BLAST
Coiled coili191 – 24656Sequence analysisAdd
BLAST
Coiled coili264 – 29128Sequence analysisAdd
BLAST
Coiled coili327 – 36135Sequence analysisAdd
BLAST
Coiled coili378 – 44568Sequence analysisAdd
BLAST
Coiled coili474 – 50128Sequence analysisAdd
BLAST
Coiled coili506 – 55045Sequence analysisAdd
BLAST
Coiled coili584 – 61835Sequence analysisAdd
BLAST
Coiled coili640 – 66728Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IFCG. Eukaryota.
ENOG410YQJ9. LUCA.
GeneTreeiENSGT00390000015293.
InParanoidiD3ZU21.
KOiK16538.
OMAiEASHIIQ.
OrthoDBiEOG7B8S3C.
PhylomeDBiD3ZU21.
TreeFamiTF329068.

Family and domain databases

InterProiIPR026205. PIBF1.
[Graphical view]
PANTHERiPTHR18950. PTHR18950. 1 hit.

Sequencei

Sequence statusi: Complete.

D3ZU21-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRKIAKESK KVNISSSLES EDISLETTIH TDDVSSSEER EGKVKITRQL
60 70 80 90 100
IERKEILHNI QLLKIELSQK NMMIDNLKMD YLTKVEELEE KLNDALHQKQ
110 120 130 140 150
LLTLRLDNQL TIQQKDAKKY QELMKQEMET ILLRQKQLEE TNHQLREKAG
160 170 180 190 200
DVRRNLRDLE LTEEQYEKLK SFPEDQLSIP EFVSIRFYEL VNPLRKEIHE
210 220 230 240 250
LQVKKNELSE ELSTNKGQLK QLTETYEEAR RNHSELLTRC QRLALELADT
260 270 280 290 300
KQLVQQGDYR QENYDKVKSE RDALEQEVLE VRRKHEVLET SHIAQAKERN
310 320 330 340 350
ELSKEVSTLQ QTVTLLQKDK EYLNRQNMEL SVRCAHEEDR LERLQVQLEE
360 370 380 390 400
TKRAREEMYE KYVTSRDHYK TEYENKLHDE LEQIKLKTNL EIDQLRSASR
410 420 430 440 450
EMYERENRNL REARDNALAE KNRAVTAEKD ALEKHEQLLD RYRELQLSTE
460 470 480 490 500
SKVSEFLHQS KLKSFESERV QLLQEETARN LTQCQLECEK YQKKLEVLTK
510 520 530 540 550
EFYSLQASSE KRITELEAQN SEHQARLDIY EKLEKELDEI IMQTAEIENE
560 570 580 590 600
DEAERILYSY GYGANVPTTA KRRLKQSVHL ARRVLQLEKQ NSSILKDLDH
610 620 630 640 650
QKEEVRQLSQ ELDRANSLLN QSQQPYRYLI ESVRQRDSKI DSLMKCTAQL
660 670 680 690 700
EKDVSNLNKE KSALLQTKNQ MALDLEQLLN HREEFAAMKQ IIINMCSKHS
710 720 730 740 750
ENNLLLTKVE SKSVTENQAS RPLTMPREHE ENVFIPKPTL FTKKEAQEWP

KNQKMKA
Length:757
Mass (Da):89,793
Last modified:April 20, 2010 - v1
Checksum:i06F1A165903CB7D2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07019011 Genomic DNA. No translation available.
AABR07019012 Genomic DNA. No translation available.
AABR07019013 Genomic DNA. No translation available.
AABR07019014 Genomic DNA. No translation available.
AABR07019015 Genomic DNA. No translation available.
RefSeqiNP_001292348.1. NM_001305419.1.
XP_001073989.1. XM_001073989.5.
XP_006222107.1. XM_006222045.2.
XP_006222108.1. XM_006222046.2.
XP_006252467.1. XM_006252405.2.
XP_006252468.1. XM_006252406.2.
XP_224451.3. XM_224451.8.
UniGeneiRn.83881.

Genome annotation databases

EnsembliENSRNOT00000036350; ENSRNOP00000037643; ENSRNOG00000009208.
GeneIDi306104.
KEGGirno:306104.
UCSCiRGD:1305077. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07019011 Genomic DNA. No translation available.
AABR07019012 Genomic DNA. No translation available.
AABR07019013 Genomic DNA. No translation available.
AABR07019014 Genomic DNA. No translation available.
AABR07019015 Genomic DNA. No translation available.
RefSeqiNP_001292348.1. NM_001305419.1.
XP_001073989.1. XM_001073989.5.
XP_006222107.1. XM_006222045.2.
XP_006222108.1. XM_006222046.2.
XP_006252467.1. XM_006252405.2.
XP_006252468.1. XM_006252406.2.
XP_224451.3. XM_224451.8.
UniGeneiRn.83881.

3D structure databases

ProteinModelPortaliD3ZU21.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiD3ZU21.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000036350; ENSRNOP00000037643; ENSRNOG00000009208.
GeneIDi306104.
KEGGirno:306104.
UCSCiRGD:1305077. rat.

Organism-specific databases

CTDi10464.
RGDi1305077. Pibf1.

Phylogenomic databases

eggNOGiENOG410IFCG. Eukaryota.
ENOG410YQJ9. LUCA.
GeneTreeiENSGT00390000015293.
InParanoidiD3ZU21.
KOiK16538.
OMAiEASHIIQ.
OrthoDBiEOG7B8S3C.
PhylomeDBiD3ZU21.
TreeFamiTF329068.

Miscellaneous databases

NextBioi655504.

Family and domain databases

InterProiIPR026205. PIBF1.
[Graphical view]
PANTHERiPTHR18950. PTHR18950. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites."
    Hoffert J.D., Pisitkun T., Wang G., Shen R.F., Knepper M.A.
    Proc. Natl. Acad. Sci. U.S.A. 103:7159-7164(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZU21_RAT
AccessioniPrimary (citable) accession number: D3ZU21
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 16, 2016
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.