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D3ZU13 (D3ZU13_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein LOC100911431 Ensembl ENSRNOP00000049629
Gene names
Name:LOC100911431 Ensembl ENSRNOP00000049629
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000049629
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length1598 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000049629

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processRNA metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: InterPro

RNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3ZU13 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: C8D6F18044F89CF1

FASTA1,598175,705
        10         20         30         40         50         60 
MNKAPQPTGP PPARSPGLPQ PAFPPGQTAP VVFSTPQATQ MNTPSQPRQG GFRSLQHFYP 

        70         80         90        100        110        120 
SRAQPPSSAA SRVQSAAPAR PGPAPHVYPA GSQVMMIPSQ ISYSASQGAY YIPGQGRSTY 

       130        140        150        160        170        180 
VVPTQQYPVQ PGAPGFYPGA SPTEFGTYAG AYYPAQSVQQ FPASVAPAPV LMNQPPQIAP 

       190        200        210        220        230        240 
KRERKTIRIR DPNQGGKDIT EEIMSGARTA STPTPPQTGG SLEPQPNGES PQVAVIIRPD 

       250        260        270        280        290        300 
DRSQGAAIGG RPGLPGPEHS PGTESQPSSP SPTPSPPPIL EPGSESNLGV LSIPGDTMTT 

       310        320        330        340        350        360 
GMIPISVEES TPISCESGEP YCLSPEPTLA EPILEVEVTL SKPIPESEFS SSPLQVSTSL 

       370        380        390        400        410        420 
VPHRAETHEP NGVIPSEDLE PEVESSTEPA PPPLSACASE SLVPIAPTAQ PEELLNGAPS 

       430        440        450        460        470        480 
PPAVDLSPVS EPEEQAKEVP SAALASIVSP TPPVAPSDTS AAQEEEIEED EDEDGEAESE 

       490        500        510        520        530        540 
KGGEDLPLDS TPVPAQLSQN LEVAAAPQVA VSVPKRRRKI KELNKKEAVG DLLDAFKEVD 

       550        560        570        580        590        600 
PAVPEVENQP PTGSNPSPES EGSAALPQPE EAEETWDSKE DKIHNAENIQ PGEQKYEYKS 

       610        620        630        640        650        660 
DQWKPLNLEE KKRYDREFLL GFQFIFASMQ KPEGLPHITD VVLDKANKTP LRSLDPSRLP 

       670        680        690        700        710        720 
GINCGPDFTP SFANLGRPTL SSRGPPRGGP GGELPRGPAG LGPRRSQQGP RKETRKIISS 

       730        740        750        760        770        780 
VIMTEDIKLN KAEKAWKPSS KRTAADKDRG EEDADGSKTQ DLFRRVRSIL NKLTPQMFQQ 

       790        800        810        820        830        840 
LMKQVTQLAI DTEERLKGVI DLIFEKAISE PNFSVAYANM CRCLMALKVP TTEKPTVTVN 

       850        860        870        880        890        900 
FRKLLLNRCQ KEFEKDKDDD EVFEKKQKEM DEAATAEERG RLKEELEEAR DIARRRSLGN 

       910        920        930        940        950        960 
IKFIGELFKL KMLTEAIMHD CVVKLLKNHD EESLECLCRL LTTIGKDLDF AKAKPRMDQY 

       970        980        990       1000       1010       1020 
FNQMEKIIKE KKTSSRIRFM LQDVLDLRQS NWVPRRGDQG PKTIDQIHKE AEMEEHREHI 

      1030       1040       1050       1060       1070       1080 
KVQQLMAKGG DKRRGGPPGP PVNRGLPLVD DGGWNTVPIS KGSRPIDTSR LTKITKPGSI 

      1090       1100       1110       1120       1130       1140 
DSNNQLFAPG GRLSWGKGSS GGSGAKPSDT ASEATRPATL NRFSALQQTL PVENTDNRRV 

      1150       1160       1170       1180       1190       1200 
VQRSSLSRER GEKAGDRGDR LERSERGGDR GDRLDRARTP ATKRSFSKEV EERSRERPSQ 

      1210       1220       1230       1240       1250       1260 
PEGLRKAASL TEDRGRDPVK REATLPPVSP PKAALAVDEV ERKSKAIIEE YLHLNDMKEA 

      1270       1280       1290       1300       1310       1320 
VQCVQELASP SLLFIFVRLG IESTLERSTI AREHMGRLLH QLLCAGHLST AQYYQGLYET 

      1330       1340       1350       1360       1370       1380 
LELAEDMEID IPHVWLYLAE LITPILQEDG VPMGELFREI TKPLRPMGKA TSLLLEILGL 

      1390       1400       1410       1420       1430       1440 
LCKSMGPKKV GMLWREAGLS WREFLAEGQD VGSFVAEKKV EYTLGEESEA PGQRALAFEE 

      1450       1460       1470       1480       1490       1500 
LRRQLEKLLK DGGSNQRVFD WIEANLNEQQ IASNTLVRAL MTTVCYSAII FETPLRVDVQ 

      1510       1520       1530       1540       1550       1560 
VLKVRARLLQ KYLSDEQKEL QALYALQALV VTLEQPANLL RMFFDALYDE DVVKEDAFYS 

      1570       1580       1590 
WESSKDPAEQ QGKGVALKSV TAFFNWLREA EDEESDHN

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000049629.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000049629.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06069456 Genomic DNA. No translation available.
IPIIPI00959453.
RefSeqXP_003752575.1. XM_003752527.1.
XP_213569.5. XM_213569.6.
UniGeneRn.101803.

3D structure databases

ModBaseSearch...

PTM databases

PhosphoSiteD3ZU13.

Proteomic databases

PRIDED3ZU13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000041777; ENSRNOP00000049629; ENSRNOG00000001738.
GeneID287986.
KEGGrno:287986.

Organism-specific databases

CTD1981.
RGD6492984. LOC100911431.

Phylogenomic databases

GeneTreeENSGT00530000063038.
KOK03260.
OMAHLSTAQY.
OrthoDBEOG4HX50F.

Gene expression databases

ArrayExpressD3ZU13.

Family and domain databases

Gene3D1.25.40.180. 3 hits.
InterProIPR016024. ARM-type_fold.
IPR003891. Initiation_fac_eIF4g_MI.
IPR016021. MIF4-like_typ_1/2/3.
IPR003890. MIF4G-like_typ-3.
IPR003307. W2_domain.
[Graphical view]
PfamPF02847. MA3. 1 hit.
PF02854. MIF4G. 1 hit.
PF02020. W2. 1 hit.
[Graphical view]
SMARTSM00515. eIF5C. 1 hit.
SM00544. MA3. 1 hit.
SM00543. MIF4G. 1 hit.
[Graphical view]
SUPFAMSSF48371. ARM-type_fold. 3 hits.
PROSITEPS51366. MI. 1 hit.
PS51363. W2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio627359.

Entry information

Entry nameD3ZU13_RAT
AccessionPrimary (citable) accession number: D3ZU13
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 3, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info