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Protein
Submitted name:

USH1 protein network component sans

Gene

Ush1g

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
USH1 protein network component sansImported
Submitted name:
Usher syndrome 1G homolog (Human) (Predicted)Imported
Gene namesi
Name:Ush1gImported
Synonyms:Ush1g_predictedImported
ORF Names:rCG_34647Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1304551 Ush1g

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000028456

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000032135

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 129ANK_REP_REGIONInterPro annotationAdd BLAST106
Repeati31 – 63ANKPROSITE-ProRule annotationAdd BLAST33
Repeati64 – 96ANKPROSITE-ProRule annotationAdd BLAST33

Keywords - Domaini

ANK repeatPROSITE-ProRule annotationSAAS annotation, RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0504 Eukaryota
COG0666 LUCA
GeneTreeiENSGT00390000017548
KOiK21878
OMAiASLHMED
OrthoDBiEOG091G0DIP
TreeFamiTF324946

Family and domain databases

CDDicd00204 ANK, 1 hit
cd09586 SAM_USH1G, 1 hit
Gene3Di1.25.40.201 hit
InterProiView protein in InterPro
IPR002110 Ankyrin_rpt
IPR020683 Ankyrin_rpt-contain_dom
IPR036770 Ankyrin_rpt-contain_sf
IPR001660 SAM
IPR013761 SAM/pointed_sf
IPR033350 USH1G
IPR037602 USH1G_SAM
PANTHERiPTHR24161:SF24 PTHR24161:SF24, 1 hit
PfamiView protein in Pfam
PF12796 Ank_2, 1 hit
PF00536 SAM_1, 1 hit
SMARTiView protein in SMART
SM00248 ANK, 3 hits
SM00454 SAM, 1 hit
SUPFAMiSSF47769 SSF47769, 1 hit
SSF48403 SSF48403, 1 hit
PROSITEiView protein in PROSITE
PS50297 ANK_REP_REGION, 1 hit
PS50088 ANK_REPEAT, 2 hits

Sequencei

Sequence statusi: Complete.

D3ZTY5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDQYHRAAR DGYLELLKEA TRKELNAPDE DGMTPTLWAA YHGNLESLRL
60 70 80 90 100
IVSRGGDPDK CDIWGNTPLH LAASNGHLHC LSFLVSFGAN IWCLDNDYHT
110 120 130 140 150
PLDMAAMKGH MECVRYLDSI AAKQSSLNPK LVGKLKDKAF REAERRIREC
160 170 180 190 200
AKMQRKHHER MERRYRRELA ERSDTLSFSS LTSSTLSRRL QHMTLGSQLP
210 220 230 240 250
YSQATLHGTA KGKAKIQKKL ERRKQGVEGT FKVSEDGRKS VRSLSGLQLG
260 270 280 290 300
NDVMFVRQGT YANPKEWGRA PLRDMFLSDE DSVSRATLAA EPAHSEVSTD
310 320 330 340 350
SGHDSLFTRP GLGTMVFRRN YVSSGLHGLG REDGGLDGAG TPRGRLHSSP
360 370 380 390 400
SLDDDSLGSA NSLQDRSCGE ELPWDELDLG LDEDLEPETS PLETFLASLH
410 420 430 440 450
MEDFASLLRH EKIDLEALML CSDLDLRSIS VPLGPRKKIL GAVRRRRQAL
460
ERPLALEDTE L
Length:461
Mass (Da):51,559
Last modified:April 20, 2010 - v1
Checksum:i38A6F4533071FE71
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC135578 Genomic DNA No translation available.
CH473948 Genomic DNA Translation: EDM06571.1
RefSeqiNP_001099320.1, NM_001105850.1
XP_017452645.1, XM_017597156.1
UniGeneiRn.218468

Genome annotation databases

EnsembliENSRNOT00000039387; ENSRNOP00000032135; ENSRNOG00000028456
GeneIDi287819
KEGGirno:287819

Similar proteinsi

Entry informationi

Entry nameiD3ZTY5_RAT
AccessioniPrimary (citable) accession number: D3ZTY5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 28, 2018
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported