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D3ZSW3

- D3ZSW3_RAT

UniProt

D3ZSW3 - D3ZSW3_RAT

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Protein
Submitted name:

Protein Ikzf3

Gene

Ikzf3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. sequence-specific DNA binding Source: Ensembl

GO - Biological processi

  1. regulation of apoptotic process Source: Ensembl
  2. regulation of B cell differentiation Source: Ensembl
  3. regulation of B cell proliferation Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Ikzf3Imported
Submitted name:
Zinc finger protein, subfamily 1A, 3 (Aiolos) (Predicted), isoform CRA_aImported
Gene namesi
Name:Ikzf3Imported
Synonyms:Zfpn1a3_predictedImported
ORF Names:rCG_33727Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 10

Organism-specific databases

RGDi1307024. Ikzf3.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. nucleus Source: Ensembl
  3. plasma membrane Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00550000074392.
KOiK09220.
OMAiYPIALTR.
OrthoDBiEOG79GT61.
TreeFamiTF331189.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 6 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZSW3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEDIQPSAEL KSTEEQPLPT ESPEALNDYS LPKPHEIENV DGTEAPANED
60 70 80 90 100
EDAGEDLMMK VKDEYSERDE NILKPEPMVD AEESEPPYSY AREYSDYENI
110 120 130 140 150
KLERHGPYDS SRPTSGKMNC DVCGLSCISF NVLMVHKRSH TGERPFQCNQ
160 170 180 190 200
CGASFTQKGN LLRHIKLHTG EKPFKCHLCN YACQRRDALT GHLRTHSVEK
210 220 230 240 250
PYKCEFCGRS YKQRSSLEEH KERCRAFLQN PDLGDAASVE ARHIKAEMGS
260 270 280 290 300
ERALVLDRLA SNVAKRKSSM PQKFIGEKRH CFDANYNPGY MYEKENEMMQ
310 320 330 340 350
TRMMDQAINN AISYLGAEAL RPLVQTPPAP TSEMVPVISS VYPIALTRAD
360 370 380 390 400
MPNGAPQELE KKRILLPEKI LPSERGLSPN NSAQDSTDTD SNHEDRQNHI
410 420 430 440 450
YQQGHMVLPQ ARNGMPLLKE VPRSFELLKP PPICLRDSIK VINKEGEVMD
460 470 480 490 500
VFRCDHCHVL FLDYVMFTIH MGCHGFRDPF ECNMCGYRSH DRYEFSSHIA

RGEHRAMLK
Length:509
Mass (Da):58,102
Last modified:April 20, 2010 - v1
Checksum:i26169D337DA8376D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06065502 Genomic DNA. No translation available.
AABR06065503 Genomic DNA. No translation available.
AABR06065504 Genomic DNA. No translation available.
CH473948 Genomic DNA. Translation: EDM05934.1.
RefSeqiNP_001100517.1. NM_001107047.1.
UniGeneiRn.218596.

Genome annotation databases

EnsembliENSRNOT00000009454; ENSRNOP00000009454; ENSRNOG00000007200.
GeneIDi303511.
KEGGirno:303511.
UCSCiRGD:1307024. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06065502 Genomic DNA. No translation available.
AABR06065503 Genomic DNA. No translation available.
AABR06065504 Genomic DNA. No translation available.
CH473948 Genomic DNA. Translation: EDM05934.1 .
RefSeqi NP_001100517.1. NM_001107047.1.
UniGenei Rn.218596.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000009454 ; ENSRNOP00000009454 ; ENSRNOG00000007200 .
GeneIDi 303511.
KEGGi rno:303511.
UCSCi RGD:1307024. rat.

Organism-specific databases

CTDi 22806.
RGDi 1307024. Ikzf3.

Phylogenomic databases

GeneTreei ENSGT00550000074392.
KOi K09220.
OMAi YPIALTR.
OrthoDBi EOG79GT61.
TreeFami TF331189.

Miscellaneous databases

NextBioi 651482.

Family and domain databases

Gene3Di 3.30.160.60. 4 hits.
InterProi IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
SMARTi SM00355. ZnF_C2H2. 6 hits.
[Graphical view ]
PROSITEi PS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZSW3_RAT
AccessioniPrimary (citable) accession number: D3ZSW3
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 1, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3