Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D3ZSW3

- D3ZSW3_RAT

UniProt

D3ZSW3 - D3ZSW3_RAT

Protein
Submitted name:

Protein Ikzf3

Gene

Ikzf3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. metal ion binding Source: InterPro
    2. sequence-specific DNA binding Source: Ensembl

    GO - Biological processi

    1. regulation of apoptotic process Source: Ensembl
    2. regulation of B cell differentiation Source: Ensembl
    3. regulation of B cell proliferation Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Ikzf3Imported
    Submitted name:
    Zinc finger protein, subfamily 1A, 3 (Aiolos) (Predicted), isoform CRA_aImported
    Gene namesi
    Name:Ikzf3Imported
    Synonyms:Zfpn1a3_predictedImported
    ORF Names:rCG_33727Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 10

    Organism-specific databases

    RGDi1307024. Ikzf3.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. nucleus Source: Ensembl
    3. plasma membrane Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00550000074392.
    KOiK09220.
    OMAiYPIALTR.
    OrthoDBiEOG79GT61.
    TreeFamiTF331189.

    Family and domain databases

    Gene3Di3.30.160.60. 4 hits.
    InterProiIPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    SMARTiSM00355. ZnF_C2H2. 6 hits.
    [Graphical view]
    PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
    PS50157. ZINC_FINGER_C2H2_2. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZSW3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEDIQPSAEL KSTEEQPLPT ESPEALNDYS LPKPHEIENV DGTEAPANED    50
    EDAGEDLMMK VKDEYSERDE NILKPEPMVD AEESEPPYSY AREYSDYENI 100
    KLERHGPYDS SRPTSGKMNC DVCGLSCISF NVLMVHKRSH TGERPFQCNQ 150
    CGASFTQKGN LLRHIKLHTG EKPFKCHLCN YACQRRDALT GHLRTHSVEK 200
    PYKCEFCGRS YKQRSSLEEH KERCRAFLQN PDLGDAASVE ARHIKAEMGS 250
    ERALVLDRLA SNVAKRKSSM PQKFIGEKRH CFDANYNPGY MYEKENEMMQ 300
    TRMMDQAINN AISYLGAEAL RPLVQTPPAP TSEMVPVISS VYPIALTRAD 350
    MPNGAPQELE KKRILLPEKI LPSERGLSPN NSAQDSTDTD SNHEDRQNHI 400
    YQQGHMVLPQ ARNGMPLLKE VPRSFELLKP PPICLRDSIK VINKEGEVMD 450
    VFRCDHCHVL FLDYVMFTIH MGCHGFRDPF ECNMCGYRSH DRYEFSSHIA 500
    RGEHRAMLK 509
    Length:509
    Mass (Da):58,102
    Last modified:April 20, 2010 - v1
    Checksum:i26169D337DA8376D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06065502 Genomic DNA. No translation available.
    AABR06065503 Genomic DNA. No translation available.
    AABR06065504 Genomic DNA. No translation available.
    CH473948 Genomic DNA. Translation: EDM05934.1.
    RefSeqiNP_001100517.1. NM_001107047.1.
    UniGeneiRn.218596.

    Genome annotation databases

    EnsembliENSRNOT00000009454; ENSRNOP00000009454; ENSRNOG00000007200.
    GeneIDi303511.
    KEGGirno:303511.
    UCSCiRGD:1307024. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06065502 Genomic DNA. No translation available.
    AABR06065503 Genomic DNA. No translation available.
    AABR06065504 Genomic DNA. No translation available.
    CH473948 Genomic DNA. Translation: EDM05934.1 .
    RefSeqi NP_001100517.1. NM_001107047.1.
    UniGenei Rn.218596.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000009454 ; ENSRNOP00000009454 ; ENSRNOG00000007200 .
    GeneIDi 303511.
    KEGGi rno:303511.
    UCSCi RGD:1307024. rat.

    Organism-specific databases

    CTDi 22806.
    RGDi 1307024. Ikzf3.

    Phylogenomic databases

    GeneTreei ENSGT00550000074392.
    KOi K09220.
    OMAi YPIALTR.
    OrthoDBi EOG79GT61.
    TreeFami TF331189.

    Miscellaneous databases

    NextBioi 651482.

    Family and domain databases

    Gene3Di 3.30.160.60. 4 hits.
    InterProi IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    SMARTi SM00355. ZnF_C2H2. 6 hits.
    [Graphical view ]
    PROSITEi PS00028. ZINC_FINGER_C2H2_1. 4 hits.
    PS50157. ZINC_FINGER_C2H2_2. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZSW3_RAT
    AccessioniPrimary (citable) accession number: D3ZSW3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3