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D3ZS31 (D3ZS31_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein Rgl1 Ensembl ENSRNOP00000063014
Submitted name:
Ral guanine nucleotide dissociation stimulator,-like 1 (Predicted), isoform CRA_a EMBL EDM09558.1
Gene names
Name:Rgl1 Ensembl ENSRNOP00000063014 RGD 1308947
Synonyms:Rgl1_predicted EMBL EDM09558.1
ORF Names:rCG_46416 EMBL EDM09558.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000063014
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length672 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 N-terminal Ras-GEF domain. SAAS SAAS019804

Contains 1 Ras-GEF domain. SAAS SAAS023578

Ontologies

Keywords
   Molecular functionGuanine-nucleotide releasing factor SAAS SAAS023578
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processsmall GTPase mediated signal transduction

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintracellular

Inferred from electronic annotation. Source: InterPro

   Molecular_functionguanyl-nucleotide exchange factor activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3ZS31 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 6680D8BDDB97F90F

FASTA67275,698
        10         20         30         40         50         60 
MRPVRSGPSK LAHWRSLWRT YGNLTGPHWE DDGSQSSPES KAVIRNAIAS ILRAWLDQCA 

        70         80         90        100        110        120 
EDFREPPHFP CLQKLLEYLK QMMPGSDPER RAQNLLEQFQ KQDVDSDNGL LNTISFSPEE 

       130        140        150        160        170        180 
EEELESGGSA ELTTFSEDLV AEQLTYMDAQ LFKKVVPHHC LGCVWSRRDR KENKHLAPTI 

       190        200        210        220        230        240 
RATISQFNAL TKCVVSTILG SKDLKTQQRA RVIEKWINIA HECRILKNFS SLRAIVSALQ 

       250        260        270        280        290        300 
SNSIYRLKKA WAAVPKDRML MFEELSEIFS DHNNHLTSRE LLMKEGTSKF ANLDSSVKEN 

       310        320        330        340        350        360 
QKRTQRRLQL QKDMGVMQGT VPYLGTFLTD LTMLDTALQD YIEGGLINFE KRRREFEVIA 

       370        380        390        400        410        420 
QIKLLQSACN SYCMSPDQKF IQWFQRQQLL TEEESYALSC EIEAAADAST TSPKPRKSMV 

       430        440        450        460        470        480 
KRLSLLFLGS DLIPGSTPTK EQPKSTASGS SGESMDSVSV SSCESNHSEA EEGSATPMDT 

       490        500        510        520        530        540 
PDEPQKKLSE SSSSCSSIHS MDTNSSGMSS LINPLSSPPA CNNNPKMHKR SVSVTSITST 

       550        560        570        580        590        600 
VLPPVYNQQN EDTCIIRISV EDNNGNMYKS IMLTSQDKTP AVIQRAMSKH NLESDPAEEY 

       610        620        630        640        650        660 
ELVQVISEDK ELVIPDSANV FYAMNSQVNF DFILRKKSSV EEQVKMRSRT SLTMPRTAKR 

       670 
GCWSNRHSKV TL

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000063014.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM09558.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM09558.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000063014.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06075449 Genomic DNA. No translation available.
AABR06075450 Genomic DNA. No translation available.
AABR06075451 Genomic DNA. No translation available.
AABR06075452 Genomic DNA. No translation available.
AABR06075453 Genomic DNA. No translation available.
AABR06075454 Genomic DNA. No translation available.
AABR06075455 Genomic DNA. No translation available.
AABR06075456 Genomic DNA. No translation available.
AABR06075457 Genomic DNA. No translation available.
CH473958 Genomic DNA. Translation: EDM09558.1.
IPIIPI00949863.
RefSeqNP_001099427.1. NM_001105957.1.
UniGeneRn.28005.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000067135; ENSRNOP00000063014; ENSRNOG00000002347.
GeneID289080.
KEGGrno:289080.
UCSCRGD:1308947. rat.

Organism-specific databases

CTD23179.
RGD1308947. Rgl1.

Phylogenomic databases

GeneTreeENSGT00700000104423.
OrthoDBEOG4CRKZH.

Family and domain databases

Gene3D1.10.840.10. 2 hits.
InterProIPR000159. Ras-assoc.
IPR019804. Ras_G-nucl-exch_fac_CS.
IPR008937. Ras_GEF.
IPR023578. Ras_GEF_dom.
IPR001895. RasGRF_CDC25.
[Graphical view]
PANTHERPTHR23113. PTHR23113. 1 hit.
PfamPF00788. RA. 1 hit.
PF00617. RasGEF. 1 hit.
[Graphical view]
SMARTSM00314. RA. 1 hit.
SM00147. RasGEF. 1 hit.
[Graphical view]
SUPFAMSSF48366. Ras_GEF. 1 hit.
PROSITEPS50200. RA. 1 hit.
PS00720. RASGEF. 1 hit.
PS50009. RASGEF_CAT. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio629181.

Entry information

Entry nameD3ZS31_RAT
AccessionPrimary (citable) accession number: D3ZS31
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info