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Protein

Neutrophil immunoglobulin-like receptor 1

Gene

Nilr1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Neutrophil immunoglobulin-like receptor 11 Publication
Gene namesi
Name:Nilr11 Publication
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi70895. Nilr1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini24 – 345ExtracellularCuratedAdd BLAST322
Transmembranei346 – 366HelicalSequence analysisAdd BLAST21
Topological domaini367 – 547CytoplasmicCuratedAdd BLAST181

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_000043536924 – 547Neutrophil immunoglobulin-like receptor 1Add BLAST524

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi49 ↔ 99Curated
Disulfide bondi147 ↔ 199Curated
Glycosylationi243N-linked (GlcNAc...)Sequence analysis1
Disulfide bondi248 ↔ 299Curated
Glycosylationi304N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein

Expressioni

Tissue specificityi

Expression detected in neutrophilic granulocytes.1 Publication

Gene expression databases

BgeeiENSRNOG00000011236.

Structurei

3D structure databases

ProteinModelPortaliD3ZQX2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 119Ig-like C2-type 1Sequence analysisAdd BLAST86
Domaini132 – 222Ig-like C2-type 2Sequence analysisAdd BLAST91
Domaini233 – 321Ig-like C2-type 3Sequence analysisAdd BLAST89

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi417 – 422ITIM motif 11 Publication6
Motifi446 – 451ITIM motif 21 Publication6
Motifi498 – 503ITIM motif 31 Publication6
Motifi528 – 533ITIM motif 41 Publication6

Domaini

Sequence similaritiesi

Contains 3 Ig-like C2-type (immunoglobulin-like) domains.Sequence analysis

Keywords - Domaini

Immunoglobulin domain, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410JB9F. Eukaryota.
ENOG41114EZ. LUCA.
KOiK06512.
OrthoDBiEOG091G0D6W.
PhylomeDBiD3ZQX2.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
[Graphical view]
PfamiPF13895. Ig_2. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 3 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 3 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D3ZQX2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFTCKALLC LGMTLGLWIT VLTEFLPRPI LRVQPDTVVS TQSKVIFFCE
60 70 80 90 100
RSQGAELYCL YKKGNPRNPR CKEIRPKPGK KVEFFISKIE PYHAGHYHCY
110 120 130 140 150
YQIHGQWSED SDALELVVTG VYDYNELRLS VLPSPVVTVG RNMTLHCISH
160 170 180 190 200
SHYDKFILTK EDHKFTSSLD TQCIPPSGQC QALFVMGPMT SNHTGTFRCY
210 220 230 240 250
GYYKHTPQLW SIPSEPLEIH ISGLSKKPSL LTHQGHILDP GVNLTLQCCS
260 270 280 290 300
DINYDRFALY KVGGVDIMQH TSQQTDTGFS MTNFTLGYVH HSTGGQYRCY
310 320 330 340 350
GAHNLSSEWS ASSDPLDILI TGPIQMSTLP PITSMPPDQL ESYVNALIGV
360 370 380 390 400
SVAFLVFLFI LIFIILQRRH QRKFRKDGEE AQKEKELQYP TGAVEPISRD
410 420 430 440 450
RDQQKRSNAA AATQEESVYA SVEDMETEDG VELDTWKPPE GDPQGETYAQ
460 470 480 490 500
VKPSRLRRVE AIIPSAMSRE QLNTKYEQAE EGQEVDGQAT ESEEPQDVTY
510 520 530 540
AQLCSRTLRQ GTAAPPLSQA GEAPEEPSVY AALATACPGA VPKDKEQ
Length:547
Mass (Da):61,258
Last modified:January 20, 2016 - v3
Checksum:i44EBCAC3304D9A0C
GO

Sequence cautioni

The sequence EDL84917 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF082534 mRNA. Translation: AAD29110.1.
AABR07071875 Genomic DNA. No translation available.
CH474101 Genomic DNA. Translation: EDL84917.1. Sequence problems.
RefSeqiNP_113901.2. NM_031713.1.
UniGeneiRn.207196.

Genome annotation databases

GeneIDi65146.
KEGGirno:65146.
UCSCiRGD:70895. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF082534 mRNA. Translation: AAD29110.1.
AABR07071875 Genomic DNA. No translation available.
CH474101 Genomic DNA. Translation: EDL84917.1. Sequence problems.
RefSeqiNP_113901.2. NM_031713.1.
UniGeneiRn.207196.

3D structure databases

ProteinModelPortaliD3ZQX2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi65146.
KEGGirno:65146.
UCSCiRGD:70895. rat.

Organism-specific databases

CTDi18733.
RGDi70895. Nilr1.

Phylogenomic databases

eggNOGiENOG410JB9F. Eukaryota.
ENOG41114EZ. LUCA.
KOiK06512.
OrthoDBiEOG091G0D6W.
PhylomeDBiD3ZQX2.

Miscellaneous databases

PROiD3ZQX2.

Gene expression databases

BgeeiENSRNOG00000011236.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
[Graphical view]
PfamiPF13895. Ig_2. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 3 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 3 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiNILR1_RAT
AccessioniPrimary (citable) accession number: D3ZQX2
Secondary accession number(s): A2J8C0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2016
Last sequence update: January 20, 2016
Last modified: November 2, 2016
This is version 56 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.