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D3ZQD3

- D3ZQD3_RAT

UniProt

D3ZQD3 - D3ZQD3_RAT

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Protein
Submitted name:

2-oxoglutarate dehydrogenase, mitochondrial

Gene
Ogdhl, Ogdhl_predicted, rCG_42296
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: InterPro
  2. thiamine pyrophosphate binding Source: InterPro

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
2-oxoglutarate dehydrogenase, mitochondrialImported
Submitted name:
Oxoglutarate dehydrogenase-like (Predicted), isoform CRA_aImported
Gene namesi
Name:OgdhlImported
Synonyms:Ogdhl_predictedImported
ORF Names:rCG_42296Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 16

Organism-specific databases

RGDi1310916. Ogdhl.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063092.
KOiK00164.
OMAiDMTRKRT.
OrthoDBiEOG7FXZXH.
TreeFamiTF300695.

Family and domain databases

Gene3Di3.40.50.970. 2 hits.
InterProiIPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

Sequencei

Sequence statusi: Complete.

D3ZQD3-1 [UniParc]FASTAAdd to Basket

« Hide

MSQLRLLLFR LGPQARKLLA TRDIAAFGGR RRSSGPPTTI PRSRGGVSPS     50
YVEEMYFAWL ENPQSVHKSW DNFFQRATKE ASVGPAQPQP PAVIQESRAS 100
VSSCTKTSKL VEDHLAVQSL IRAYQIRGHH VAQLDPLGIL DADLDSFVPS 150
DLITTIDKLA FYDLQEADLD KEFRLPTTTF IGGSENTLSL REIIRRLEST 200
YCQHIGLEFM FINDVEQCQW IRQKFETPGV MKFSIEEKRT LLARLVRSMR 250
FEDFLARKWS SEKRFGLEGC EVMIPALKTI IDKSSEMGVE NVILGMPHRG 300
RLNVLANVIR KDLEQIFCQF DPKLEAADEG SGDVKYHLGM YHERINRVTN 350
RNITLSLVAN PSHLEAVDPV VQGKTKAEQF YRGDAQGRKV MSILVHGDAA 400
FAGQGVVYET FHLSDLPSYT TNGTVHVVVN NQIGFTTDPR MARSSPYPTD 450
VARVVNAPIF HVNADDPEAV IYVCSVAAEW RNTFNKDVVV DLVCYRRRGH 500
NEMDEPMFTQ PLMYKQIHKQ VPVLKKYADK LIAEGTVTLQ EFEEEIAKYD 550
RICEEAYGRS KDKKILHIKH WLDSPWPGFF NVDGEPKSMT YPTTGIPEDT 600
LSHIGNVASS VPLEDFKIHT GLSRILRGRA DMTKKRTVDW ALAEYMAFGS 650
LLKEGIHVRL SGQDVERGTF SHRHHVLHDQ DVDRRTCVPM NHLWPDQAPY 700
TVCNSSLSEY GVLGFELGYA MASPNALVLW EAQFGDFHNT AQCIIDQFIS 750
TGQAKWVRHN GIVLLLPHGM EGMGPEHSSA RPERFLQMSN DDSDAYPVFT 800
EDFEVSQLYD CNWIVVNCST PASYFHVLRR QVLLPFRKPG WMWGPIDGAP 850
GGWLFAFQLI VFTPKSLLRH PDAKSSFDQM VSGTSFQRMI PEDGPAAQSP 900
ERVERLIFCT GKVYYDLVKE RSSQGLEKQV AITRLEQISP FPFDLIMREA 950
EKYSGAELVW CQEEHKNMGY YDYISPRFMT LLGHSRPIWY VGREPAAAPA 1000
TGNKNTHLVS LRKFLDTAFN LKAFEGKTF 1029
Length:1,029
Mass (Da):116,712
Last modified:April 20, 2010 - v1
Checksum:iD2E3505CEA4F4EB1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06086413 Genomic DNA. No translation available.
CH474046 Genomic DNA. Translation: EDL88917.1.
CH474046 Genomic DNA. Translation: EDL88918.1.
RefSeqiNP_001099532.1. NM_001106062.1.
UniGeneiRn.38202.

Genome annotation databases

EnsembliENSRNOT00000027054; ENSRNOP00000027054; ENSRNOG00000019955.
GeneIDi290566.
KEGGirno:290566.
UCSCiRGD:1310916. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06086413 Genomic DNA. No translation available.
CH474046 Genomic DNA. Translation: EDL88917.1 .
CH474046 Genomic DNA. Translation: EDL88918.1 .
RefSeqi NP_001099532.1. NM_001106062.1.
UniGenei Rn.38202.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000027054 ; ENSRNOP00000027054 ; ENSRNOG00000019955 .
GeneIDi 290566.
KEGGi rno:290566.
UCSCi RGD:1310916. rat.

Organism-specific databases

CTDi 55753.
RGDi 1310916. Ogdhl.

Phylogenomic databases

GeneTreei ENSGT00530000063092.
KOi K00164.
OMAi DMTRKRT.
OrthoDBi EOG7FXZXH.
TreeFami TF300695.

Miscellaneous databases

NextBioi 631224.

Family and domain databases

Gene3Di 3.40.50.970. 2 hits.
InterProi IPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view ]
PANTHERi PTHR23152. PTHR23152. 1 hit.
Pfami PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view ]
PIRSFi PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTi SM00861. Transket_pyr. 1 hit.
[Graphical view ]
SUPFAMi SSF52518. SSF52518. 2 hits.
TIGRFAMsi TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZQD3_RAT
AccessioniPrimary (citable) accession number: D3ZQD3
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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