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D3ZQB1

- D3ZQB1_RAT

UniProt

D3ZQB1 - D3ZQB1_RAT

Protein
Submitted name:

Protein Arid3c

Gene

Arid3c

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. chromatin binding Source: Ensembl
    2. DNA binding Source: InterPro

    GO - Biological processi

    1. positive regulation of transcription from RNA polymerase II promoter Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Arid3cImported
    Gene namesi
    Name:Arid3cImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 5

    Organism-specific databases

    RGDi1560943. Arid3c.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. membrane raft Source: Ensembl
    3. nucleus Source: UniProtKB-KW

    Keywords - Cellular componenti

    NucleusSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD3ZQB1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains ARID domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00550000074575.
    OMAiGMPPSFL.
    OrthoDBiEOG77DJ6W.
    PhylomeDBiD3ZQB1.
    TreeFamiTF320364.

    Family and domain databases

    Gene3Di1.10.150.60. 1 hit.
    InterProiIPR001606. ARID/BRIGHT_DNA-bd.
    IPR023334. REKLES_domain.
    [Graphical view]
    PfamiPF01388. ARID. 1 hit.
    [Graphical view]
    SMARTiSM00501. BRIGHT. 1 hit.
    [Graphical view]
    SUPFAMiSSF46774. SSF46774. 1 hit.
    PROSITEiPS51011. ARID. 1 hit.
    PS51486. REKLES. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZQB1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEALQRQQAA RLAQGVGPLA PPRLPLPQPP LLGARTLQAP EGALGVVGAE    50
    EEEGAEEDEE GETPLVEEET AEQSHPGARC PNSPSGQSPG IQPHEWTYEE 100
    QFKQLYELDA DPKRKEFLDD LFSFMQKRGT PVNRVPIMAK QVLDLYALFR 150
    LVTAKGGLVE VINRKVWREV TRGLSLPTTI TSAAFTLRTQ YMKYLYPYEC 200
    ETRALSSPGE LQAAIDSNRR EGRRQAYTTV PLFNLAGPTP RGAPGPASSH 250
    GPAPTTTPNC PGSTQGSASG LPAHACAQLS PSPVKKEESG IPPPRLAIPV 300
    GLALEAAREK LAPEEPPEKR AVLMGPMDPP RLGATPSFLP RGKAPLREER 350
    LDGPLNLAGS GISSINMALE INGVVYTGIL FARRQPVPAS LGPTNPPPPP 400
    STGPPSSTLP 410
    Length:410
    Mass (Da):43,836
    Last modified:April 20, 2010 - v1
    Checksum:i6003FC41B9DB455A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06036752 Genomic DNA. No translation available.
    RefSeqiNP_001167452.1. NM_001173981.1.
    UniGeneiRn.225882.

    Genome annotation databases

    EnsembliENSRNOT00000046589; ENSRNOP00000039046; ENSRNOG00000013416.
    GeneIDi502946.
    KEGGirno:502946.
    UCSCiRGD:1560943. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06036752 Genomic DNA. No translation available.
    RefSeqi NP_001167452.1. NM_001173981.1.
    UniGenei Rn.225882.

    3D structure databases

    ProteinModelPortali D3ZQB1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000046589 ; ENSRNOP00000039046 ; ENSRNOG00000013416 .
    GeneIDi 502946.
    KEGGi rno:502946.
    UCSCi RGD:1560943. rat.

    Organism-specific databases

    CTDi 138715.
    RGDi 1560943. Arid3c.

    Phylogenomic databases

    GeneTreei ENSGT00550000074575.
    OMAi GMPPSFL.
    OrthoDBi EOG77DJ6W.
    PhylomeDBi D3ZQB1.
    TreeFami TF320364.

    Miscellaneous databases

    NextBioi 712863.
    PROi D3ZQB1.

    Family and domain databases

    Gene3Di 1.10.150.60. 1 hit.
    InterProi IPR001606. ARID/BRIGHT_DNA-bd.
    IPR023334. REKLES_domain.
    [Graphical view ]
    Pfami PF01388. ARID. 1 hit.
    [Graphical view ]
    SMARTi SM00501. BRIGHT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46774. SSF46774. 1 hit.
    PROSITEi PS51011. ARID. 1 hit.
    PS51486. REKLES. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZQB1_RAT
    AccessioniPrimary (citable) accession number: D3ZQB1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3