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Protein
Submitted name:

AT-rich interaction domain 3C

Gene

Arid3c

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interaction domain 3CImported
Gene namesi
Name:Arid3cImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi1560943. Arid3c.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiD3ZQB1.
PRIDEiD3ZQB1.

Expressioni

Gene expression databases

BgeeiENSRNOG00000013416.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000039046.

Structurei

3D structure databases

ProteinModelPortaliD3ZQB1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini111 – 203ARIDInterPro annotationAdd BLAST93
Domaini302 – 387REKLESInterPro annotationAdd BLAST86

Phylogenomic databases

eggNOGiKOG2744. Eukaryota.
ENOG410Y2AP. LUCA.
GeneTreeiENSGT00550000074575.
InParanoidiD3ZQB1.
OMAiGLHPHEW.
OrthoDBiEOG091G16XQ.
PhylomeDBiD3ZQB1.
TreeFamiTF320364.

Family and domain databases

InterProiView protein in InterPro
IPR001606. ARID_dom.
IPR023334. REKLES_domain.
PfamiView protein in Pfam
PF01388. ARID. 1 hit.
SMARTiView protein in SMART
SM00501. BRIGHT. 1 hit.
SUPFAMiSSF46774. SSF46774. 1 hit.
PROSITEiView protein in PROSITE
PS51011. ARID. 1 hit.
PS51486. REKLES. 1 hit.

Sequencei

Sequence statusi: Complete.

D3ZQB1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEALQRQQAA RLAQGVGPLA PPRLPLPQPP LLGARTLQAP EGALGVVGAE
60 70 80 90 100
EEEGAEEDEE GETPLVEEET AEQSHPGARC PNSPSGQSPG IQPHEWTYEE
110 120 130 140 150
QFKQLYELDA DPKRKEFLDD LFSFMQKRGT PVNRVPIMAK QVLDLYALFR
160 170 180 190 200
LVTAKGGLVE VINRKVWREV TRGLSLPTTI TSAAFTLRTQ YMKYLYPYEC
210 220 230 240 250
ETRALSSPGE LQAAIDSNRR EGRRQAYTTV PLFNLAGPTP RGAPGPASSH
260 270 280 290 300
GPAPTTTPNC PGSTQGSASG LPAHACAQLS PSPVKKEESG IPPPRLAIPV
310 320 330 340 350
GLALEAAREK LAPEEPPEKR AVLMGPMDPP RLGATPSFLP RGKAPLREER
360 370 380 390 400
LDGPLNLAGS GISSINMALE INGVVYTGIL FARRQPVPAS LGPTNPPPPP
410
STGPPSSTLP
Length:410
Mass (Da):43,836
Last modified:April 20, 2010 - v1
Checksum:i6003FC41B9DB455A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC110351 Genomic DNA. No translation available.
RefSeqiNP_001167452.1. NM_001173981.1.
XP_008761863.1. XM_008763641.2.
UniGeneiRn.225882.

Genome annotation databases

EnsembliENSRNOT00000046589; ENSRNOP00000039046; ENSRNOG00000013416.
GeneIDi502946.
KEGGirno:502946.
UCSCiRGD:1560943. rat.

Similar proteinsi

Entry informationi

Entry nameiD3ZQB1_RAT
AccessioniPrimary (citable) accession number: D3ZQB1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: August 30, 2017
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported