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Protein
Submitted name:

Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1

Gene

Plod1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDioxygenaseImported, Oxidoreductase
LigandIronSAAS annotation, Metal-bindingSAAS annotation

Enzyme and pathway databases

ReactomeiR-RNO-1650814. Collagen biosynthesis and modifying enzymes.

Names & Taxonomyi

Protein namesi
Submitted name:
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1Imported
Submitted name:
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1Imported
Gene namesi
Name:Plod1Imported
ORF Names:rCG_31468Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi621382. Plod1.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_501120515219 – 728Sequence analysisAdd BLAST710

Expressioni

Gene expression databases

BgeeiENSRNOG00000007763.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini637 – 728Fe2OG dioxygenaseInterPro annotationAdd BLAST92

Keywords - Domaini

CollagenImported, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG1971. Eukaryota.
ENOG410Y4QU. LUCA.
GeneTreeiENSGT00550000074427.
KOiK00473.
OMAiKFEMGHV.
OrthoDBiEOG091G02DK.
TreeFamiTF313826.

Family and domain databases

Gene3Di3.90.550.10. 1 hit.
InterProiView protein in InterPro
IPR029044. Nucleotide-diphossugar_trans.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
PfamiView protein in Pfam
PF03171. 2OG-FeII_Oxy. 1 hit.
SMARTiView protein in SMART
SM00702. P4Hc. 1 hit.
SUPFAMiSSF53448. SSF53448. 1 hit.
PROSITEiView protein in PROSITE
PS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.

Sequencei

Sequence statusi: Complete.

D3ZQ74-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSLLLLASL AWLLLAQAKD DAKLEDNLLV LTVATKETEG FRRFKRSAQF
60 70 80 90 100
FNYKIQSLGL GEDWSAAGGP SAAGGGQKVR LLKKALKKYA DKEDLVILFV
110 120 130 140 150
DSYDVVFASG PRELLKKFQQ AKSRVVFSAE ELIYPDRRLE AKYPTVPDGK
160 170 180 190 200
RFLGSGGFIG YAPSLSKLVA EWEGQDNDSD QLFYTKIFLD PEKREQINIS
210 220 230 240 250
LDHRCRIFQN LDGALDEVVL KFEMGHVRAR NLAYDTLPVV IHGNGPTKLQ
260 270 280 290 300
VNYLGNYIPR FWTFETGCTV CDEGLRSLKG IGDEALPTVL VGVFIEQPTP
310 320 330 340 350
FLSLFFRRLL HLRYPQKQMR LFIHNQEQHH KLQVEQFLAE HGGEYQSVKL
360 370 380 390 400
VGPEVRMANA DARNMGADLC RQDQTCTYYF SVDADVALTE PNSLRLLIEQ
410 420 430 440 450
NKNVIAPLMT RHGRLWSNFW GALSADGYYA RSEDYVDIVQ GRRVGVWNVP
460 470 480 490 500
YISNIYLIKG SALRAELRHV DLFHYSKLDP DMSFCANVRQ QEVFMFLTNR
510 520 530 540 550
HTFGHLLSLD NYQTTHLHND LWEVFSNPED WKEKYIHENY TKALAGKLVE
560 570 580 590 600
TPCPDVYWFP IFTEVACDEL VEEMEHYGQW SLGDNKDNRI QGGYENVPTI
610 620 630 640 650
DIHMNQITFE REWHKFLVEY IAPLTEKLYP GYYTKAQFDL AFVVRYKPDE
660 670 680 690 700
QPSLMPHHDA STFTINIALN RVGEDYEGGG CRFLRYNCSV RAPRKGWALM
710 720
HPGRLTHYHE GLPTTKGTRY IAVSFVDP
Length:728
Mass (Da):83,613
Last modified:April 3, 2013 - v2
Checksum:iF3219D9FFFF03CB9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC097784 Genomic DNA. No translation available.
CH473968 Genomic DNA. Translation: EDL81085.1.
RefSeqiNP_446279.2. NM_053827.2.
UniGeneiRn.4445.

Genome annotation databases

EnsembliENSRNOT00000010433; ENSRNOP00000010433; ENSRNOG00000007763.
GeneIDi116552.
KEGGirno:116552.

Similar proteinsi

Entry informationi

Entry nameiD3ZQ74_RAT
AccessioniPrimary (citable) accession number: D3ZQ74
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: December 20, 2017
This is version 65 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported