D3ZPA7 (D3ZPA7_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Scara3 Ensembl ENSRNOP00000022015

Submitted name:
Scavenger receptor class A, member 3 (Predicted) EMBL EDL85368.1

Gene names

Name:	Scara3 RGD 1309269 Ensembl ENSRNOP00000022015
Synonyms:	Scara3_predicted EMBL EDL85368.1
ORF Names:	rCG_52193 EMBL EDL85368.1

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000022015

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	606 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Receptor EMBL EDL85368.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	D3ZPA7 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: D57A4F9F41ED3D43	FASTA	606	65,339
	10 20 30 40 50 60 MKVRSAGSDR DVLCVTEEDL AGEDEDMSSF PCSQEGRAGP RCNRCQKNLS LHTSVRILYL 70 80 90 100 110 120 FLALLLVAVA VLASLVFRKV DSLSEDISLA QSIYNKKLVS MQENLQGLDP KALINCSFCR 130 140 150 160 170 180 EAEQLGQEIR KLQEELEGLQ KMLLAQEVQL DQTSQAHELL STTSSQISQE MGTCSFSIHQ 190 200 210 220 230 240 VNQSLGLFLA QVRGWQATTA GMDISLKDLT QECYDVKAAV HQINFTVGQT AEWIHGIQRK 250 260 270 280 290 300 TDEETLTLQK IVTDWQNYTR LFGGLRSTSA KTGEIVKTIQ ATLGASSQRI SQNSESMHDL 310 320 330 340 350 360 VLQVMGLQLQ LDNISSFLDD HEENMHDLQY HTRYAQNRTV ERFESLEGRM ASHEIEIGTI 370 380 390 400 410 420 FTNINATDNH VHSMLKYLDD VRLSCTLGFH THAEELYYLN KSVSLMLGTT DLLRERFSLL 430 440 450 460 470 480 SARLDFNVRN LSMIMEEMKA VDTHHGEILR NVTIIRGVPG PPGPRGFKGD TGMKGPVGNK 490 500 510 520 530 540 GPKGDPGSLG PPGPQGPQGQ PGEPGPVGER GPAGPRGFPG LKGSKGSFGT GGPRGQPGPK 550 560 570 580 590 600 GDVGPPGPEG PPGSQGPSGP QGKPGISGKA GSPGQRGATG PKGEPGIQGP PGLPGPPGPP GNQSPY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000022015.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDL85368.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDL85368.1.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000022015.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06083706 Genomic DNA. No translation available. CH474023 Genomic DNA. Translation: EDL85368.1.
IPI	IPI00870871.
RefSeq	NP_001102340.1. NM_001108870.1.
UniGene	Rn.9379.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000022020; ENSRNOP00000022015; ENSRNOG00000016177.
GeneID	364405.
KEGG	rno:364405.
UCSC	RGD:1309269. rat.
Organism-specific databases
CTD	51435.
RGD	1309269. Scara3.
Phylogenomic databases
GeneTree	ENSGT00700000104492.
OrthoDB	EOG44QT0S.
Family and domain databases
InterPro	IPR008160. Collagen. [Graphical view]
Pfam	PF01391. Collagen. 3 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	685342.

Entry information

Entry name

D3ZPA7_RAT

Accession

Primary (citable) accession number: D3ZPA7

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	April 3, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)