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D3ZPA7

- D3ZPA7_RAT

UniProt

D3ZPA7 - D3ZPA7_RAT

Protein
Submitted name:

Protein Scara3

Gene

Scara3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    Keywords - Molecular functioni

    ReceptorImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Scara3Imported
    Submitted name:
    Scavenger receptor class A, member 3 (Predicted)Imported
    Gene namesi
    Name:Scara3Imported
    Synonyms:Scara3_predictedImported
    ORF Names:rCG_52193Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 15

    Organism-specific databases

    RGDi1309269. Scara3.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00740000115363.
    OMAiQEVQLDQ.
    OrthoDBiEOG7F24SR.
    TreeFamiTF332426.

    Family and domain databases

    InterProiIPR008160. Collagen.
    [Graphical view]
    PfamiPF01391. Collagen. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZPA7-1 [UniParc]FASTAAdd to Basket

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    MKVRSAGSDR DVLCVTEEDL AGEDEDMSSF PCSQEGRAGP RCNRCQKNLS    50
    LHTSVRILYL FLALLLVAVA VLASLVFRKV DSLSEDISLA QSIYNKKLVS 100
    MQENLQGLDP KALINCSFCR EAEQLGQEIR KLQEELEGLQ KMLLAQEVQL 150
    DQTSQAHELL STTSSQISQE MGTCSFSIHQ VNQSLGLFLA QVRGWQATTA 200
    GMDISLKDLT QECYDVKAAV HQINFTVGQT AEWIHGIQRK TDEETLTLQK 250
    IVTDWQNYTR LFGGLRSTSA KTGEIVKTIQ ATLGASSQRI SQNSESMHDL 300
    VLQVMGLQLQ LDNISSFLDD HEENMHDLQY HTRYAQNRTV ERFESLEGRM 350
    ASHEIEIGTI FTNINATDNH VHSMLKYLDD VRLSCTLGFH THAEELYYLN 400
    KSVSLMLGTT DLLRERFSLL SARLDFNVRN LSMIMEEMKA VDTHHGEILR 450
    NVTIIRGVPG PPGPRGFKGD TGMKGPVGNK GPKGDPGSLG PPGPQGPQGQ 500
    PGEPGPVGER GPAGPRGFPG LKGSKGSFGT GGPRGQPGPK GDVGPPGPEG 550
    PPGSQGPSGP QGKPGISGKA GSPGQRGATG PKGEPGIQGP PGLPGPPGPP 600
    GNQSPY 606
    Length:606
    Mass (Da):65,339
    Last modified:April 20, 2010 - v1
    Checksum:iD57A4F9F41ED3D43
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06083706 Genomic DNA. No translation available.
    CH474023 Genomic DNA. Translation: EDL85368.1.
    RefSeqiNP_001102340.1. NM_001108870.1.
    UniGeneiRn.9379.

    Genome annotation databases

    EnsembliENSRNOT00000022020; ENSRNOP00000022015; ENSRNOG00000016177.
    GeneIDi364405.
    KEGGirno:364405.
    UCSCiRGD:1309269. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06083706 Genomic DNA. No translation available.
    CH474023 Genomic DNA. Translation: EDL85368.1 .
    RefSeqi NP_001102340.1. NM_001108870.1.
    UniGenei Rn.9379.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000022020 ; ENSRNOP00000022015 ; ENSRNOG00000016177 .
    GeneIDi 364405.
    KEGGi rno:364405.
    UCSCi RGD:1309269. rat.

    Organism-specific databases

    CTDi 51435.
    RGDi 1309269. Scara3.

    Phylogenomic databases

    GeneTreei ENSGT00740000115363.
    OMAi QEVQLDQ.
    OrthoDBi EOG7F24SR.
    TreeFami TF332426.

    Miscellaneous databases

    NextBioi 685342.

    Family and domain databases

    InterProi IPR008160. Collagen.
    [Graphical view ]
    Pfami PF01391. Collagen. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZPA7_RAT
    AccessioniPrimary (citable) accession number: D3ZPA7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3