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D3ZPA7

- D3ZPA7_RAT

UniProt

D3ZPA7 - D3ZPA7_RAT

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Protein
Submitted name:

Protein Scara3

Gene
Scara3, Scara3_predicted, rCG_52193
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Scara3Imported
Submitted name:
Scavenger receptor class A, member 3 (Predicted)Imported
Gene namesi
Name:Scara3Imported
Synonyms:Scara3_predictedImported
ORF Names:rCG_52193Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 15

Organism-specific databases

RGDi1309269. Scara3.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00740000115363.
OMAiQEVQLDQ.
OrthoDBiEOG7F24SR.
TreeFamiTF332426.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZPA7-1 [UniParc]FASTAAdd to Basket

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MKVRSAGSDR DVLCVTEEDL AGEDEDMSSF PCSQEGRAGP RCNRCQKNLS    50
LHTSVRILYL FLALLLVAVA VLASLVFRKV DSLSEDISLA QSIYNKKLVS 100
MQENLQGLDP KALINCSFCR EAEQLGQEIR KLQEELEGLQ KMLLAQEVQL 150
DQTSQAHELL STTSSQISQE MGTCSFSIHQ VNQSLGLFLA QVRGWQATTA 200
GMDISLKDLT QECYDVKAAV HQINFTVGQT AEWIHGIQRK TDEETLTLQK 250
IVTDWQNYTR LFGGLRSTSA KTGEIVKTIQ ATLGASSQRI SQNSESMHDL 300
VLQVMGLQLQ LDNISSFLDD HEENMHDLQY HTRYAQNRTV ERFESLEGRM 350
ASHEIEIGTI FTNINATDNH VHSMLKYLDD VRLSCTLGFH THAEELYYLN 400
KSVSLMLGTT DLLRERFSLL SARLDFNVRN LSMIMEEMKA VDTHHGEILR 450
NVTIIRGVPG PPGPRGFKGD TGMKGPVGNK GPKGDPGSLG PPGPQGPQGQ 500
PGEPGPVGER GPAGPRGFPG LKGSKGSFGT GGPRGQPGPK GDVGPPGPEG 550
PPGSQGPSGP QGKPGISGKA GSPGQRGATG PKGEPGIQGP PGLPGPPGPP 600
GNQSPY 606
Length:606
Mass (Da):65,339
Last modified:April 20, 2010 - v1
Checksum:iD57A4F9F41ED3D43
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06083706 Genomic DNA. No translation available.
CH474023 Genomic DNA. Translation: EDL85368.1.
RefSeqiNP_001102340.1. NM_001108870.1.
UniGeneiRn.9379.

Genome annotation databases

EnsembliENSRNOT00000022020; ENSRNOP00000022015; ENSRNOG00000016177.
GeneIDi364405.
KEGGirno:364405.
UCSCiRGD:1309269. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06083706 Genomic DNA. No translation available.
CH474023 Genomic DNA. Translation: EDL85368.1 .
RefSeqi NP_001102340.1. NM_001108870.1.
UniGenei Rn.9379.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000022020 ; ENSRNOP00000022015 ; ENSRNOG00000016177 .
GeneIDi 364405.
KEGGi rno:364405.
UCSCi RGD:1309269. rat.

Organism-specific databases

CTDi 51435.
RGDi 1309269. Scara3.

Phylogenomic databases

GeneTreei ENSGT00740000115363.
OMAi QEVQLDQ.
OrthoDBi EOG7F24SR.
TreeFami TF332426.

Miscellaneous databases

NextBioi 685342.

Family and domain databases

InterProi IPR008160. Collagen.
[Graphical view ]
Pfami PF01391. Collagen. 3 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZPA7_RAT
AccessioniPrimary (citable) accession number: D3ZPA7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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