Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D3ZPA7 (D3ZPA7_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

Scavenger receptor class A, member 3 (Predicted) EMBL EDL85368.1
Gene names
Name:Scara3 RGD 1309269 Ensembl ENSRNOP00000022015
Synonyms:Scara3_predicted EMBL EDL85368.1
ORF Names:rCG_52193 EMBL EDL85368.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000022015
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length606 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionReceptor EMBL EDL85368.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
D3ZPA7 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: D57A4F9F41ED3D43

FASTA60665,339
        10         20         30         40         50         60 
MKVRSAGSDR DVLCVTEEDL AGEDEDMSSF PCSQEGRAGP RCNRCQKNLS LHTSVRILYL 

        70         80         90        100        110        120 
FLALLLVAVA VLASLVFRKV DSLSEDISLA QSIYNKKLVS MQENLQGLDP KALINCSFCR 

       130        140        150        160        170        180 
EAEQLGQEIR KLQEELEGLQ KMLLAQEVQL DQTSQAHELL STTSSQISQE MGTCSFSIHQ 

       190        200        210        220        230        240 
VNQSLGLFLA QVRGWQATTA GMDISLKDLT QECYDVKAAV HQINFTVGQT AEWIHGIQRK 

       250        260        270        280        290        300 
TDEETLTLQK IVTDWQNYTR LFGGLRSTSA KTGEIVKTIQ ATLGASSQRI SQNSESMHDL 

       310        320        330        340        350        360 
VLQVMGLQLQ LDNISSFLDD HEENMHDLQY HTRYAQNRTV ERFESLEGRM ASHEIEIGTI 

       370        380        390        400        410        420 
FTNINATDNH VHSMLKYLDD VRLSCTLGFH THAEELYYLN KSVSLMLGTT DLLRERFSLL 

       430        440        450        460        470        480 
SARLDFNVRN LSMIMEEMKA VDTHHGEILR NVTIIRGVPG PPGPRGFKGD TGMKGPVGNK 

       490        500        510        520        530        540 
GPKGDPGSLG PPGPQGPQGQ PGEPGPVGER GPAGPRGFPG LKGSKGSFGT GGPRGQPGPK 

       550        560        570        580        590        600 
GDVGPPGPEG PPGSQGPSGP QGKPGISGKA GSPGQRGATG PKGEPGIQGP PGLPGPPGPP 


GNQSPY 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000022015.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL85368.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL85368.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000022015.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06083706 Genomic DNA. No translation available.
CH474023 Genomic DNA. Translation: EDL85368.1.
RefSeqNP_001102340.1. NM_001108870.1.
UniGeneRn.9379.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000022020; ENSRNOP00000022015; ENSRNOG00000016177.
GeneID364405.
KEGGrno:364405.
UCSCRGD:1309269. rat.

Organism-specific databases

CTD51435.
RGD1309269. Scara3.

Phylogenomic databases

GeneTreeENSGT00740000115363.
OMAQEVQLDQ.
OrthoDBEOG7F24SR.
TreeFamTF332426.

Family and domain databases

InterProIPR008160. Collagen.
[Graphical view]
PfamPF01391. Collagen. 3 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio685342.

Entry information

Entry nameD3ZPA7_RAT
AccessionPrimary (citable) accession number: D3ZPA7
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 19, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)