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Protein
Submitted name:

Protein Scara3

Gene

Scara3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Scara3Imported
Submitted name:
Scavenger receptor class A, member 3 (Predicted)Imported
Gene namesi
Name:Scara3Imported
Synonyms:Scara3_predictedImported
ORF Names:rCG_52193Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 15

Organism-specific databases

RGDi1309269. Scara3.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022015.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00790000122993.
OMAiNNCSFCH.
OrthoDBiEOG7F24SR.
TreeFamiTF332426.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZPA7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVRSAGSDR DVLCVTEEDL AGEDEDMSSF PCSQEGRAGP RCNRCQKNLS
60 70 80 90 100
LHTSVRILYL FLALLLVAVA VLASLVFRKV DSLSEDISLA QSIYNKKLVS
110 120 130 140 150
MQENLQGLDP KALINCSFCR EAEQLGQEIR KLQEELEGLQ KMLLAQEVQL
160 170 180 190 200
DQTSQAHELL STTSSQISQE MGTCSFSIHQ VNQSLGLFLA QVRGWQATTA
210 220 230 240 250
GMDISLKDLT QECYDVKAAV HQINFTVGQT AEWIHGIQRK TDEETLTLQK
260 270 280 290 300
IVTDWQNYTR LFGGLRSTSA KTGEIVKTIQ ATLGASSQRI SQNSESMHDL
310 320 330 340 350
VLQVMGLQLQ LDNISSFLDD HEENMHDLQY HTRYAQNRTV ERFESLEGRM
360 370 380 390 400
ASHEIEIGTI FTNINATDNH VHSMLKYLDD VRLSCTLGFH THAEELYYLN
410 420 430 440 450
KSVSLMLGTT DLLRERFSLL SARLDFNVRN LSMIMEEMKA VDTHHGEILR
460 470 480 490 500
NVTIIRGVPG PPGPRGFKGD TGMKGPVGNK GPKGDPGSLG PPGPQGPQGQ
510 520 530 540 550
PGEPGPVGER GPAGPRGFPG LKGSKGSFGT GGPRGQPGPK GDVGPPGPEG
560 570 580 590 600
PPGSQGPSGP QGKPGISGKA GSPGQRGATG PKGEPGIQGP PGLPGPPGPP

GNQSPY
Length:606
Mass (Da):65,339
Last modified:April 20, 2010 - v1
Checksum:iD57A4F9F41ED3D43
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06083706 Genomic DNA. No translation available.
CH474023 Genomic DNA. Translation: EDL85368.1.
RefSeqiNP_001102340.1. NM_001108870.1.
UniGeneiRn.9379.

Genome annotation databases

EnsembliENSRNOT00000022020; ENSRNOP00000022015; ENSRNOG00000016177.
GeneIDi364405.
KEGGirno:364405.
UCSCiRGD:1309269. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06083706 Genomic DNA. No translation available.
CH474023 Genomic DNA. Translation: EDL85368.1.
RefSeqiNP_001102340.1. NM_001108870.1.
UniGeneiRn.9379.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022015.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000022020; ENSRNOP00000022015; ENSRNOG00000016177.
GeneIDi364405.
KEGGirno:364405.
UCSCiRGD:1309269. rat.

Organism-specific databases

CTDi51435.
RGDi1309269. Scara3.

Phylogenomic databases

GeneTreeiENSGT00790000122993.
OMAiNNCSFCH.
OrthoDBiEOG7F24SR.
TreeFamiTF332426.

Miscellaneous databases

NextBioi685342.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZPA7_RAT
AccessioniPrimary (citable) accession number: D3ZPA7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: June 24, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.