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Protein
Submitted name:

Forkhead box protein D1

Gene

Foxd1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi130 – 224Fork-headPROSITE-ProRule annotationAdd BLAST95

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Forkhead box protein D1Imported
Gene namesi
Name:Foxd1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi621712. Foxd1.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

PTM / Processingi

Proteomic databases

PaxDbiD3ZP43.

Expressioni

Gene expression databases

BgeeiENSRNOG00000043332.
GenevisibleiD3ZP43. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000060730.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini130 – 224Fork-head DNA-bindingInterPro annotationAdd BLAST95

Phylogenomic databases

eggNOGiKOG2294. Eukaryota.
COG5025. LUCA.
GeneTreeiENSGT00760000118904.
KOiK09397.
OMAiMTLSTEM.
OrthoDBiEOG091G0HW9.
TreeFamiTF316127.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR001766. Fork_head_dom.
IPR018122. TF_fork_head_CS_1.
IPR030456. TF_fork_head_CS_2.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00250. Forkhead. 1 hit.
PRINTSiPR00053. FORKHEAD.
SMARTiView protein in SMART
SM00339. FH. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.

Sequencei

Sequence statusi: Complete.

D3ZP43-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLSTEMSDA SGLAEETDID VVGEGEDEEE EEDDDDEGGG GSQLPSSAQR
60 70 80 90 100
RRRSYAGEDE LEDLEEEDDD EDLLLASRPA ASPAPPGPAP APGAGSGGCS
110 120 130 140 150
GAGAGGGAGG GVGAGAGTGG GGSSKNPLVK PPYSYIALIT MAILQSPKKR
160 170 180 190 200
LTLSEICEFI SGRFPYYREK FPAWQNSIRH NLSLNDCFVK IPREPGNPGK
210 220 230 240 250
GNYWTLDPES ADMFDNGSFL RRRKRFKRQP LLAPHAAAEA LLLRGAGPAA
260 270 280 290 300
SAGDPGAALF PPPPPPTACG YGAYGCAYGL QLPPCAPPSA LFAAAAAAAA
310 320 330 340 350
AAFHPHSPPP PPPPPPPPGA AAELARTAFG YRPHALAAAL PGPLQAAAVK
360 370 380 390 400
AGGPGTAALA RSPFSIESLI GRTRGPATAG AHASPGATSG TAPGPGGGGC
410 420 430 440 450
AVQAAAGPAV ALTRSLVVAA AAAASSVSSS AALGTLHQGT ALSSVENFTA

RISNC
Length:455
Mass (Da):45,360
Last modified:April 3, 2013 - v2
Checksum:i090706D656AEA15D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07072696 Genomic DNA. No translation available.
AC119356 Genomic DNA. No translation available.
RefSeqiNP_599164.1. NM_134337.1.
UniGeneiRn.50822.

Genome annotation databases

EnsembliENSRNOT00000066819; ENSRNOP00000060730; ENSRNOG00000043332.
GeneIDi171299.
KEGGirno:171299.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07072696 Genomic DNA. No translation available.
AC119356 Genomic DNA. No translation available.
RefSeqiNP_599164.1. NM_134337.1.
UniGeneiRn.50822.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000060730.

Proteomic databases

PaxDbiD3ZP43.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000066819; ENSRNOP00000060730; ENSRNOG00000043332.
GeneIDi171299.
KEGGirno:171299.

Organism-specific databases

CTDi2297.
RGDi621712. Foxd1.

Phylogenomic databases

eggNOGiKOG2294. Eukaryota.
COG5025. LUCA.
GeneTreeiENSGT00760000118904.
KOiK09397.
OMAiMTLSTEM.
OrthoDBiEOG091G0HW9.
TreeFamiTF316127.

Gene expression databases

BgeeiENSRNOG00000043332.
GenevisibleiD3ZP43. RN.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR001766. Fork_head_dom.
IPR018122. TF_fork_head_CS_1.
IPR030456. TF_fork_head_CS_2.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00250. Forkhead. 1 hit.
PRINTSiPR00053. FORKHEAD.
SMARTiView protein in SMART
SM00339. FH. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZP43_RAT
AccessioniPrimary (citable) accession number: D3ZP43
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: May 10, 2017
This is version 61 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.