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D3ZNG0 (D3ZNG0_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1436 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 SUEL-type lectin domain. RuleBase RU003680

Contains 1 olfactomedin-like domain.

Contains GPS domain. SAAS SAAS000832

Contains olfactomedin-like domain. SAAS SAAS003112

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000041829

Sequences

Sequence LengthMass (Da)Tools
D3ZNG0 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 8739CE461785E870

FASTA1,436161,186
        10         20         30         40         50         60 
MVSSGCRMRS LWFIMIISFS PNTEGFSRAA LPFGLVRREL SCEGYSIDLR CPGSDVIMIE 

        70         80         90        100        110        120 
SANYGRTDDK ICDADPFQME NTDCYLPDAF KIMTQRCNNR TQCVVVTGSD VFPDPCPGTY 

       130        140        150        160        170        180 
KYLEVQYECV PYTLENKVFV CPGTLKAIVD SPSIYEAEQK AGAWCKDPLQ AADKIYFMPW 

       190        200        210        220        230        240 
TPYRTDTLIE YASLEDFQNS RQTTTYKLPN RVDGTGFVVY DGAVFFNKER TRNIVKFDLR 

       250        260        270        280        290        300 
TRIKSGEAII NYANYHDTSP YRWGGKTDID LAVDENGLWV IYATEQNNGM IVISQLNPYT 

       310        320        330        340        350        360 
LRFEATWETT YDKRAASNAF MICGVLYVVR SVYQDNESEA GKNVIDYIYN TRLSRGEHVD 

       370        380        390        400        410        420 
VPFPNQYQYI AAVDYNPRDN QLYVWNNNFI LRYSLEFGPP DPAQVPTTAV TITSSAELFK 

       430        440        450        460        470        480 
TTVSTTSSTS QRGPVSSTVA GPQEGSRGTK PPPAVSTTKI PPVTNIFPLP ERFCEALEMK 

       490        500        510        520        530        540 
GIKWPQTQRG MMVERPCPKG TRGTASYLCM ASTGTWNPKG PDLSNCTSHW VNQLAQKIRS 

       550        560        570        580        590        600 
GENAASLANE LAKHTKGTVF AGDVSSSVRL MEQLVDILDA QLQELKPSEK DSAGRSYNKL 

       610        620        630        640        650        660 
QKREKTCRAY LKAIVDTVDN LLRAETLDCW KHMNSSEQAH TATMLLDTLE EGAFVLADNL 

       670        680        690        700        710        720 
LEPTRVSMPT DNIVLEVAVL STEGQVQDFT FHLGFKGAFS SIQLSANTVK QNSRNGLAKV 

       730        740        750        760        770        780 
VFIIYRSLGP FLSTENATVK LGADLLGRNS TIAVNSHVLS VSINKESSRV YLTDPVLFSM 

       790        800        810        820        830        840 
PHIDSDNYFN ANCSFWNYSE RTMMGYWSTQ GCKLVDTNKT RTTCACSHLT NFAILMAHRE 

       850        860        870        880        890        900 
IVYKDGVHKL LLTVITWVGI VVSLVCLAIC IFTFCFFRGL QSDRNTIHKN LCINLFIAEF 

       910        920        930        940        950        960 
IFLIGIDKTQ YTIACPVFAG LLHFFFLAAF SWMCLEGVQL YLMLVEVFES EYSRKKYYYV 

       970        980        990       1000       1010       1020 
AGYLFPATVV GVSAAIDYKS YGTLEACWLH VDNYFIWSFI GPVTFIILLN IIFLVITLCK 

      1030       1040       1050       1060       1070       1080 
MVKHSNTLKP DSSRLENINN YRVCDGYYNT DLPGSWVLGA FALLCLLGLT WSFGLLFVNE 

      1090       1100       1110       1120       1130       1140 
ETVVMAYLFT AFNAFQGLFI FIFHCALQKK VRKEYAKCFR HWYCCGGLPT ESPHSSVKAS 

      1150       1160       1170       1180       1190       1200 
TSRTSARYSS GTQSRIRRMW NDTVRKQSES SFISGDINST STLNQGHSLN NTRDTSAMDT 

      1210       1220       1230       1240       1250       1260 
LPLNGNFNNS YSLRKADYHD GVQVVDCGLS LNDTAFEKMI ISELVHNNLR GSNKTHNLEL 

      1270       1280       1290       1300       1310       1320 
KLPVKPVIGG SSSEDDAIVA DASSLMHGDN PGLEFRHKEL EAPLIPQRTH SLLYQPQKKV 

      1330       1340       1350       1360       1370       1380 
KPEATDSYVS QLTAEADEHL QSPNRDSLYT SMPNLRDSPY PESSPDMAED LSPSRRSENE 

      1390       1400       1410       1420       1430 
DIYYKSMPNL GAGRQLQMCY QISRGNSDGY IIPINKEGCI PEGDVREGQM QLVTSL 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000041829.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000041829.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06021536 Genomic DNA. No translation available.
AABR06021537 Genomic DNA. No translation available.
AABR06021538 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortalD3ZNG0.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000045020; ENSRNOP00000041829; ENSRNOG00000032660.

Organism-specific databases

RGD620835. Lphn2.

Phylogenomic databases

GeneTreeENSGT00710000106375.

Family and domain databases

InterProIPR022624. DUF3497.
IPR017981. GPCR_2-like.
IPR001879. GPCR_2_extracellular_dom.
IPR003924. GPCR_2_latrophilin.
IPR003334. GPCR_2_latrophilin_rcpt_C.
IPR000832. GPCR_2_secretin-like.
IPR017983. GPCR_2_secretin-like_CS.
IPR000203. GPS.
IPR000922. Lectin_gal-bd_dom.
IPR003112. Olfac-like.
[Graphical view]
PfamPF00002. 7tm_2. 1 hit.
PF12003. DUF3497. 1 hit.
PF02140. Gal_Lectin. 1 hit.
PF01825. GPS. 1 hit.
PF02793. HRM. 1 hit.
PF02354. Latrophilin. 2 hits.
PF02191. OLF. 1 hit.
[Graphical view]
PRINTSPR00249. GPCRSECRETIN.
PR01444. LATROPHILIN.
SMARTSM00303. GPS. 1 hit.
SM00008. HormR. 1 hit.
SM00284. OLF. 1 hit.
[Graphical view]
PROSITEPS00650. G_PROTEIN_RECEP_F2_2. 1 hit.
PS50227. G_PROTEIN_RECEP_F2_3. 1 hit.
PS50261. G_PROTEIN_RECEP_F2_4. 1 hit.
PS50221. GPS. 1 hit.
PS51132. OLF. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35568928.

Entry information

Entry nameD3ZNG0_RAT
AccessionPrimary (citable) accession number: D3ZNG0
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 34 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)