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D3ZN38

- D3ZN38_RAT

UniProt

D3ZN38 - D3ZN38_RAT

Protein
Submitted name:

Protein Stard5

Gene

Stard5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. cholesterol binding Source: InterPro
    2. cholesterol transporter activity Source: InterPro

    GO - Biological processi

    1. steroid biosynthetic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Stard5Imported
    Submitted name:
    Similar to StAR-related protein 1-4E (Predicted), isoform CRA_aImported
    Gene namesi
    Name:Stard5Imported
    Synonyms:RGD1561783_predictedImported
    ORF Names:rCG_24710Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 1

    Organism-specific databases

    RGDi1561783. Stard5.

    Family & Domainsi

    Sequence similaritiesi

    Contains START domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00530000063294.
    OMAiCFCEPVP.
    OrthoDBiEOG7353XV.

    Family and domain databases

    Gene3Di3.30.530.20. 1 hit.
    InterProiIPR000799. StAR.
    IPR023393. START-like_dom.
    IPR002913. START_lipid-bd_dom.
    [Graphical view]
    PfamiPF01852. START. 1 hit.
    [Graphical view]
    PRINTSiPR00978. STARPROTEIN.
    SMARTiSM00234. START. 1 hit.
    [Graphical view]
    PROSITEiPS50848. START. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZN38-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDLSWATQES EAVAEKVLRY RRDASGWKKC REGNGVSISW RPSEEFPGNL    50
    YRGEGILCGT PEEVWDCVKP VAGGLREKWD DNVNSFEIVQ SITDTLCVSR 100
    TSTPSAAMKL ISPRDFVDLV LVKKYEDGTI SSNATHVEHP LCPPKPGFVR 150
    GFNHPCGCFC EPLPGEPNKT HLVTFFQTDL NGYLPQSVVD SFFPRSMAEF 200
    YPNLQKAVRK FHH 213
    Length:213
    Mass (Da):23,955
    Last modified:April 20, 2010 - v1
    Checksum:iE8D10102D99AFDCD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06006744 Genomic DNA. No translation available.
    CH473980 Genomic DNA. Translation: EDM08749.1.
    RefSeqiNP_001178940.1. NM_001192011.1.
    UniGeneiRn.62294.

    Genome annotation databases

    EnsembliENSRNOT00000015320; ENSRNOP00000015320; ENSRNOG00000025052.
    GeneIDi502348.
    KEGGirno:502348.
    UCSCiRGD:1561783. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06006744 Genomic DNA. No translation available.
    CH473980 Genomic DNA. Translation: EDM08749.1 .
    RefSeqi NP_001178940.1. NM_001192011.1.
    UniGenei Rn.62294.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000015320 ; ENSRNOP00000015320 ; ENSRNOG00000025052 .
    GeneIDi 502348.
    KEGGi rno:502348.
    UCSCi RGD:1561783. rat.

    Organism-specific databases

    CTDi 80765.
    RGDi 1561783. Stard5.

    Phylogenomic databases

    GeneTreei ENSGT00530000063294.
    OMAi CFCEPVP.
    OrthoDBi EOG7353XV.

    Miscellaneous databases

    NextBioi 711313.
    PROi D3ZN38.

    Family and domain databases

    Gene3Di 3.30.530.20. 1 hit.
    InterProi IPR000799. StAR.
    IPR023393. START-like_dom.
    IPR002913. START_lipid-bd_dom.
    [Graphical view ]
    Pfami PF01852. START. 1 hit.
    [Graphical view ]
    PRINTSi PR00978. STARPROTEIN.
    SMARTi SM00234. START. 1 hit.
    [Graphical view ]
    PROSITEi PS50848. START. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZN38_RAT
    AccessioniPrimary (citable) accession number: D3ZN38
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3