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D3ZLC3 (D3ZLC3_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Sperm specific antigen 2 (Predicted) EMBL EDL79267.1
Gene names
Name:Ssfa2 RGD 1310767 Ensembl ENSRNOP00000008046
Synonyms:Ssfa2_predicted EMBL EDL79267.1
ORF Names:rCG_27156 EMBL EDL79267.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000008046
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length1255 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
D3ZLC3 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 03409140A92B915B

FASTA1,255137,191
        10         20         30         40         50         60 
MNRPLSAEAE EELEWQVASR RRKAWAKCRS SWQASETEDL STETTTQDED EDDEEDLPGA 

        70         80         90        100        110        120 
KLPAAAGRGN VPNEKIAIWL KDCRTPLGAS LDEQSSVGPK GVLLRNGGSF EDDLSLGAEA 

       130        140        150        160        170        180 
NHLHEPDAQV ENCNNILAKE RRLQFHQKGR SMNSTGSGKS SGTVSSVSEL LELYEEDPEE 

       190        200        210        220        230        240 
ILYNLGFGRD EPDIASKIPS RFFNSSSFAR GIDIKVFLSA QMQRMEVENP NYALTSRFRQ 

       250        260        270        280        290        300 
IEVLTTVANA FSSLYSQVSG TPLQRIGSMS SVTSTKEAAD CPPPLTRSNT ANRLMKTLSK 

       310        320        330        340        350        360 
LNLCVDKTEK AEGSSTPAAE KGRSLSVSLS EDGGGGKSDP KPQKVIKKKE SSSMLATVTE 

       370        380        390        400        410        420 
EVSGSSSTIT DSIDADRLSD EAESNISHKV ESEENGEAHS QNDALRQSAV TDPDFGHDGG 

       430        440        450        460        470        480 
SMSSLCELES SSELKSAQAS SSEKEPCATL TIPSIRNIMV QQKDSFEMEE VQSTEGEAPH 

       490        500        510        520        530        540 
VPATCQLSLA KSKRDHLLRT ASQHSDSSGF AEDSTDCLSL NHLQVHESLQ AMGSSADSCD 

       550        560        570        580        590        600 
SETTVTSLGE DHVTPTAPDQ PYFNESEEES LASLQKGRAK VIVAEKRKAD NQDFPHCATA 

       610        620        630        640        650        660 
ENAGNNESVK GPCEPGPQIT ETETEEEPPL AATGELLREG SGESDMDKGS ECEFAQYTTH 

       670        680        690        700        710        720 
HILRSLTSFE EAQGSGMSSK KKTEFPSSVD RVNTALQRAQ MKVCSMSGQR VGRSLIKSKD 

       730        740        750        760        770        780 
LLKQRYFLAK AGYPLRRSQS LPTTLLSPVR VVSSVNVRLS PGKETRCSPP SFTYKYTPEE 

       790        800        810        820        830        840 
EQELEKQVTE HDGQSLVKST IFIPPSSVKK EEAPQSEGTR LEECHHGRLA PCPQFAPISQ 

       850        860        870        880        890        900 
STCSLHSVHS EWQDRPLCEH MRTLSAHSVP NISGAACSAF SSPFGCPYSH RHAAHPCRPC 

       910        920        930        940        950        960 
PVNPPSAIEM QLRRVLHDIR NSLQNLSQYP MTRGPDLAAA PYSTQKSSVL PLYENTFQEL 

       970        980        990       1000       1010       1020 
QVVRRSLNLF RTQMMDLELA MLRQQTVVYP HMTEEDRYEV DQLQGLRNSV RMELQDLELQ 

      1030       1040       1050       1060       1070       1080 
LEERLLGLDE QLRAVRVPSP FRSSALPGMC GSRSADNLSC PSPLNVMEPV TELMREQSYL 

      1090       1100       1110       1120       1130       1140 
KSELGLSLGD MGYEIPPGES SESVFSQATS ESSSVCSSPS HTNRRSRGPS GSKPRARLVA 

      1150       1160       1170       1180       1190       1200 
RKKIFRASVA LTPTAPSRTG SVQTPPDLES SEEAGAAEEA SQVVGLTSHV EEEPEDLSLM 

      1210       1220       1230       1240       1250 
PTAEEMHRNV EQDELQQVIR EIKESIVGEI RREIVSGLLA AVSSSKASAS KQDSH 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000008046.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL79267.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL79267.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000008046.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06024309 Genomic DNA. No translation available.
CH473949 Genomic DNA. Translation: EDL79267.1.
RefSeqNP_001101208.1. NM_001107738.1.
UniGeneRn.12870.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000008046; ENSRNOP00000008046; ENSRNOG00000005865.
GeneID311146.
KEGGrno:311146.

Organism-specific databases

CTD6744.
RGD1310767. Ssfa2.

Phylogenomic databases

GeneTreeENSGT00530000063345.
OMAQSTCSLH.
OrthoDBEOG7S21X2.
TreeFamTF331566.

Family and domain databases

InterProIPR029325. IP3R-bd.
IPR026648. SSFA2.
IPR029326. SSFA2_C.
[Graphical view]
PANTHERPTHR17469:SF11. PTHR17469:SF11. 1 hit.
PfamPF14722. KRAP_IP3R_bind. 1 hit.
PF14723. SSFA2_C. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio663062.
PROD3ZLC3.

Entry information

Entry nameD3ZLC3_RAT
AccessionPrimary (citable) accession number: D3ZLC3
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)