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Protein
Submitted name:

Protein Zfp536

Gene

Zfp536

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zfp536Imported
Gene namesi
Name:Zfp536Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi1563363. Zfp536.

PTM / Processingi

Proteomic databases

PaxDbiD3ZJS6.

PTM databases

iPTMnetiD3ZJS6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000018956.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini130 – 15728C2H2-typeInterPro annotationAdd
BLAST
Domaini158 – 18023C2H2-typeInterPro annotationAdd
BLAST
Domaini274 – 30229C2H2-typeInterPro annotationAdd
BLAST
Domaini345 – 37228C2H2-typeInterPro annotationAdd
BLAST
Domaini373 – 40028C2H2-typeInterPro annotationAdd
BLAST
Domaini631 – 65828C2H2-typeInterPro annotationAdd
BLAST
Domaini753 – 78028C2H2-typeInterPro annotationAdd
BLAST
Domaini781 – 80828C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00530000063100.
InParanoidiD3ZJS6.
OMAiQSANEFR.
PhylomeDBiD3ZJS6.
TreeFamiTF332241.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 10 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 6 hits.
PS50157. ZINC_FINGER_C2H2_2. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZJS6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEEASLCLGV SSTAPEAEPH LSGPVLNGQY AMSQKLHQIT SQLSHAFPEL
60 70 80 90 100
HPRPNPEEKP PAALEEKAHV PMSGQSMGSQ MALLANQLGR DVDNSLNGRV
110 120 130 140 150
DLQQFLNGQN LGIMSQMSDI EDDARKNRKY PCPLCGKRFR FNSILSLHMR
160 170 180 190 200
THTGEKPFKC PYCDHRAAQK GNLKIHLRTH KLGNLGKGRG RVREENRLLH
210 220 230 240 250
ELEERAILRD KQMKGSLLQP RSDLKPLAHA QQAPLATCNL TLPPNHSVPD
260 270 280 290 300
VAHPAPSPKP ANLQEDSVTP AAGFRCTFCK GKFKKREELD RHIRILHKPY
310 320 330 340 350
KCTLCDFAAS QEEELISHVE KAHITAESAQ GQGPNGGGEQ SANEFRCEVC
360 370 380 390 400
GQVFSQAWFL KGHMRKHKDS FEHCCQICGR RFKEPWFLKN HMKVHLNKLS
410 420 430 440 450
VKNKSPTEPE VSVPMGGLSQ EAHANLYSRY LSCLQSGFMA PDKASLNEPS
460 470 480 490 500
QLYGKGELPA KEKEVLGKLL SPISSMAHSV PEGDKHSLLG CLNLVPPLKS
510 520 530 540 550
SCIERLQAAA KAAEMDPVNS YQAWQLMARG MAMEHGFLSK EHQLTRNHED
560 570 580 590 600
PLANAGVLFD KEKREYVLVG ADGSKQKMPA DLVHSTKVGN QRDLPNKLDP
610 620 630 640 650
LEGSREFLSH GLNQTLEYNL QGPGNMKEKP TECPDCGRVF RTYHQVVVHS
660 670 680 690 700
RVHKRDRKSD EDALHVGVGL EERRGSGSDQ ESQSVSRSTT PGSSNVTEES
710 720 730 740 750
GAGGGLSQTG SAQEDSPHPS SPSSSDIGEE AGRAGGVQQQ ALLRDRNLGS
760 770 780 790 800
AMKDCPYCAK TFRTSHHLKV HLRIHTGEKP YKCPHCDYAG TQSASLKYHL
810 820 830 840 850
ERHHRERQNG AGPLSGQPPN QEHKDETSSK APMFIRPDIL RGAFKGLPGI
860 870 880 890 900
DFRSGPASQQ WTSSSMLSSG DHSGQATGMS SELSSDALKA SDLPSKSSHF
910 920 930 940 950
SEIGRAYQNV VSNGVNFQGS LQAFMDSFVL SSLKKKDMKD KVPSEAHSMK
960 970 980 990 1000
AHTAEGGEEK ASVKPSQRKT EKSQYEPLDL SVRPDATTLP GSSVTMQDSI
1010 1020 1030 1040 1050
AWHGCLFCAF TTSSMELMAL HLQANHLGKA KRKDHPTGVT ANCKEQVREA
1060 1070 1080 1090 1100
GKVSVLPPIQ SNKEMALSST VGSVLDSAPE KMAQGPAKET LGDQKSGQWP
1110 1120 1130 1140 1150
SHMDPAFCTF PSDFYKQFGV YPTMVGSGGP GSCLNKNPEG KAHPEDDAPI
1160 1170 1180 1190 1200
LIPETANKNT TDDLSDIASS EDMDSSSKGE NNEEEEIDTE PEMMSKPLSA
1210 1220 1230 1240 1250
LSKDGSHEGG ESLLPPGAPQ PIQGLVSPLA QAAEEQWHGP GILPAQDPSA
1260 1270 1280 1290 1300
GLPKPERGPP GLEKPMSMLS VLRAYSADGL AAFNGLASST ANSGCIKRPD

LCGKF
Length:1,305
Mass (Da):142,056
Last modified:April 20, 2010 - v1
Checksum:iDBE7325FB8F1736C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07003026 Genomic DNA. No translation available.
AABR07003027 Genomic DNA. No translation available.
AABR07003028 Genomic DNA. No translation available.
RefSeqiXP_008757489.1. XM_008759267.1.
XP_008757490.1. XM_008759268.1.
XP_008757491.1. XM_008759269.1.
XP_008757492.1. XM_008759270.1.
XP_008757493.1. XM_008759271.1.
XP_008757494.1. XM_008759272.1.
XP_008757495.1. XM_008759273.1.
XP_008757496.1. XM_008759274.1.
XP_008757497.1. XM_008759275.1.
XP_008772726.1. XM_008774504.1.
XP_008772727.1. XM_008774505.1.
XP_008772728.1. XM_008774506.1.
XP_008772729.1. XM_008774507.1.
XP_008772730.1. XM_008774508.1.
XP_008772731.1. XM_008774509.1.
XP_008772732.1. XM_008774510.1.
XP_008772733.1. XM_008774511.1.
XP_008772734.1. XM_008774512.1.

Genome annotation databases

EnsembliENSRNOT00000018956; ENSRNOP00000018956; ENSRNOG00000014163.
GeneIDi292820.
KEGGirno:292820.
UCSCiRGD:1563363. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07003026 Genomic DNA. No translation available.
AABR07003027 Genomic DNA. No translation available.
AABR07003028 Genomic DNA. No translation available.
RefSeqiXP_008757489.1. XM_008759267.1.
XP_008757490.1. XM_008759268.1.
XP_008757491.1. XM_008759269.1.
XP_008757492.1. XM_008759270.1.
XP_008757493.1. XM_008759271.1.
XP_008757494.1. XM_008759272.1.
XP_008757495.1. XM_008759273.1.
XP_008757496.1. XM_008759274.1.
XP_008757497.1. XM_008759275.1.
XP_008772726.1. XM_008774504.1.
XP_008772727.1. XM_008774505.1.
XP_008772728.1. XM_008774506.1.
XP_008772729.1. XM_008774507.1.
XP_008772730.1. XM_008774508.1.
XP_008772731.1. XM_008774509.1.
XP_008772732.1. XM_008774510.1.
XP_008772733.1. XM_008774511.1.
XP_008772734.1. XM_008774512.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000018956.

PTM databases

iPTMnetiD3ZJS6.

Proteomic databases

PaxDbiD3ZJS6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000018956; ENSRNOP00000018956; ENSRNOG00000014163.
GeneIDi292820.
KEGGirno:292820.
UCSCiRGD:1563363. rat.

Organism-specific databases

CTDi243937.
RGDi1563363. Zfp536.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00530000063100.
InParanoidiD3ZJS6.
OMAiQSANEFR.
PhylomeDBiD3ZJS6.
TreeFamiTF332241.

Miscellaneous databases

NextBioi634869.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 10 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 6 hits.
PS50157. ZINC_FINGER_C2H2_2. 8 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZJS6_RAT
AccessioniPrimary (citable) accession number: D3ZJS6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 11, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.