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Protein
Submitted name:

Protein Ice2

Gene

Ice2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. positive regulation of transcription from RNA polymerase III promoter Source: Ensembl
  2. snRNA transcription from RNA polymerase III promoter Source: Ensembl
  3. snRNA transcription from RNA polymerase II promoter Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Ice2Imported
Gene namesi
Name:Ice2Imported
Synonyms:Narg2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 8

Organism-specific databases

RGDi1585038. Ice2.

Subcellular locationi

GO - Cellular componenti

  1. Cajal body Source: Ensembl
  2. histone locus body Source: Ensembl
  3. transcriptionally active chromatin Source: Ensembl
  4. transcription elongation factor complex Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000006883.
InParanoidiD3ZIQ8.
OMAiLMGFFPF.
OrthoDBiEOG7RNJZS.
TreeFamiTF106272.

Family and domain databases

InterProiIPR019535. NARG2_C.
[Graphical view]
PfamiPF10505. NARG2_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZIQ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSGITMSEP RLNWDVTPKN GLKVFFSPEN YKDHSMAPSL KELYILSNRR
60 70 80 90 100
IGENVSVSAN SVENEPAVSS ATQAKEKVGM ILLPKPRVPY PRFSRFSQRE
110 120 130 140 150
QRTFVDLLVK YAKIPSSSKT VGTNTNEFLQ YLDMKKHVNE EVNEFLKFLQ
160 170 180 190 200
NSAKKCAQDY NMLSDEARLF TEQILRACIE QVKKYPEFYT LHEVTSLMGF
210 220 230 240 250
FPFKIEMGLK LEKTLLVLGS AKFVKTAFPS MPVKLQLSKE DMSSIENPQQ
260 270 280 290 300
QAEAMHCDIS KDPNAEKLVS RYHPQIALTS QALFTLLNNH GPSYKEQWEI
310 320 330 340 350
PVCVQMIAVE GSKPVKVIYI NSPLPRKQMT MRERNQIFHE VPLKHIFSKT
360 370 380 390 400
TSVPVSAVFM DKPEEYTSEV DISTEASECR KIETLENLDL DFDGDVTELE
410 420 430 440 450
TFGVTTTSPS RSPSSESDSS APIMTDVHTA PKVTAIPVAP AAPVTPAAPV
460 470 480 490 500
APVVAPVAPV VAPVAPAAPV TPVTPEASAI PNITDDSRSL CQILMKQLQK
510 520 530 540 550
EKQLFSGVES GPEACKNKDD QGLEPCAEEG PSANAKSLTQ DSEVHRTEEI
560 570 580 590 600
SNESDVGALC TSDERQSVQK NADNPNETAT ASETADTEKG IPCGSDTDED
610 620 630 640 650
CLIIDTESKS NSDGRTAGLG SSPNSSAQAS VENQTTTTVS EESCVLKKPI
660 670 680 690 700
KRVYKKFDPV GEILKMQDEL LKPVSRTIPE LPLTNSEESK QPSASEQPSA
710 720 730 740 750
TLDASTWPKS SWPSAFQKPK GRLPYELQDY VEDTSEYVAP QEGNFVYKLF
760 770 780 790 800
SLQDLLLLVR CSVQRVETRP RSKKRKKIRR QFPVYVLPKV EYQGCYGVEA
810 820 830 840 850
LTESELCRFW TESLLHSNCS FYVGHIDAFT SKLFMLEEIT SEELKEKLAA
860 870 880 890 900
LKISSLFNIL QHILKKLCSL QEGSYLLSHA AEDSSLLIYK TSDGKVTRTA
910 920 930 940 950
YNLHKAHCDL PGVPSSLSVP WVPLDPSYLL PYHIHHGRIP CTFPPKSLRP
960 970 980 990
AAQPKVGATR MPTRNHRNPV SRETKSSCLP VQQVENEGVA QNKRKIM
Length:997
Mass (Da):110,806
Last modified:April 3, 2013 - v2
Checksum:i88D3374A81980C4F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06055748 Genomic DNA. No translation available.
RefSeqiNP_001178037.1. NM_001191108.1.
XP_006243464.1. XM_006243402.2.
UniGeneiRn.230480.

Genome annotation databases

EnsembliENSRNOT00000013742; ENSRNOP00000013742; ENSRNOG00000010160.
GeneIDi691379.
KEGGirno:691379.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06055748 Genomic DNA. No translation available.
RefSeqiNP_001178037.1. NM_001191108.1.
XP_006243464.1. XM_006243402.2.
UniGeneiRn.230480.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000013742; ENSRNOP00000013742; ENSRNOG00000010160.
GeneIDi691379.
KEGGirno:691379.

Organism-specific databases

CTDi79664.
RGDi1585038. Ice2.

Phylogenomic databases

GeneTreeiENSGT00390000006883.
InParanoidiD3ZIQ8.
OMAiLMGFFPF.
OrthoDBiEOG7RNJZS.
TreeFamiTF106272.

Miscellaneous databases

NextBioi35567832.

Family and domain databases

InterProiIPR019535. NARG2_C.
[Graphical view]
PfamiPF10505. NARG2_C. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZIQ8_RAT
AccessioniPrimary (citable) accession number: D3ZIQ8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: March 4, 2015
This is version 34 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.