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D3ZIQ8 (D3ZIQ8_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length997 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000013742

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentnucleus

Inferred from electronic annotation. Source: Ensembl

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3ZIQ8 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 88D3374A81980C4F

FASTA997110,806
        10         20         30         40         50         60 
MSSGITMSEP RLNWDVTPKN GLKVFFSPEN YKDHSMAPSL KELYILSNRR IGENVSVSAN 

        70         80         90        100        110        120 
SVENEPAVSS ATQAKEKVGM ILLPKPRVPY PRFSRFSQRE QRTFVDLLVK YAKIPSSSKT 

       130        140        150        160        170        180 
VGTNTNEFLQ YLDMKKHVNE EVNEFLKFLQ NSAKKCAQDY NMLSDEARLF TEQILRACIE 

       190        200        210        220        230        240 
QVKKYPEFYT LHEVTSLMGF FPFKIEMGLK LEKTLLVLGS AKFVKTAFPS MPVKLQLSKE 

       250        260        270        280        290        300 
DMSSIENPQQ QAEAMHCDIS KDPNAEKLVS RYHPQIALTS QALFTLLNNH GPSYKEQWEI 

       310        320        330        340        350        360 
PVCVQMIAVE GSKPVKVIYI NSPLPRKQMT MRERNQIFHE VPLKHIFSKT TSVPVSAVFM 

       370        380        390        400        410        420 
DKPEEYTSEV DISTEASECR KIETLENLDL DFDGDVTELE TFGVTTTSPS RSPSSESDSS 

       430        440        450        460        470        480 
APIMTDVHTA PKVTAIPVAP AAPVTPAAPV APVVAPVAPV VAPVAPAAPV TPVTPEASAI 

       490        500        510        520        530        540 
PNITDDSRSL CQILMKQLQK EKQLFSGVES GPEACKNKDD QGLEPCAEEG PSANAKSLTQ 

       550        560        570        580        590        600 
DSEVHRTEEI SNESDVGALC TSDERQSVQK NADNPNETAT ASETADTEKG IPCGSDTDED 

       610        620        630        640        650        660 
CLIIDTESKS NSDGRTAGLG SSPNSSAQAS VENQTTTTVS EESCVLKKPI KRVYKKFDPV 

       670        680        690        700        710        720 
GEILKMQDEL LKPVSRTIPE LPLTNSEESK QPSASEQPSA TLDASTWPKS SWPSAFQKPK 

       730        740        750        760        770        780 
GRLPYELQDY VEDTSEYVAP QEGNFVYKLF SLQDLLLLVR CSVQRVETRP RSKKRKKIRR 

       790        800        810        820        830        840 
QFPVYVLPKV EYQGCYGVEA LTESELCRFW TESLLHSNCS FYVGHIDAFT SKLFMLEEIT 

       850        860        870        880        890        900 
SEELKEKLAA LKISSLFNIL QHILKKLCSL QEGSYLLSHA AEDSSLLIYK TSDGKVTRTA 

       910        920        930        940        950        960 
YNLHKAHCDL PGVPSSLSVP WVPLDPSYLL PYHIHHGRIP CTFPPKSLRP AAQPKVGATR 

       970        980        990 
MPTRNHRNPV SRETKSSCLP VQQVENEGVA QNKRKIM 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000013742.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000013742.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06055748 Genomic DNA. No translation available.
RefSeqNP_001178037.1. NM_001191108.1.
XP_006243464.1. XM_006243402.1.
UniGeneRn.230480.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000013742; ENSRNOP00000013742; ENSRNOG00000010160.
GeneID691379.
KEGGrno:691379.
UCSCRGD:1585038. rat.

Organism-specific databases

CTD79664.
RGD1585038. Narg2.

Phylogenomic databases

GeneTreeENSGT00390000006883.
OMALMGFFPF.
OrthoDBEOG7RNJZS.
TreeFamTF106272.

Family and domain databases

InterProIPR019535. NARG2_C.
[Graphical view]
PfamPF10505. NARG2_C. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35567832.

Entry information

Entry nameD3ZIQ8_RAT
AccessionPrimary (citable) accession number: D3ZIQ8
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: March 19, 2014
This is version 28 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)