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Protein
Submitted name:

ATP-binding cassette subfamily D member 1

Gene

Abcd1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi508 – 515ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandATP-bindingPROSITE-ProRule annotationImported, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-RNO-1369062 ABC transporters in lipid homeostasis
R-RNO-2046105 Linoleic acid (LA) metabolism
R-RNO-2046106 alpha-linolenic acid (ALA) metabolism
R-RNO-390247 Beta-oxidation of very long chain fatty acids

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-binding cassette subfamily D member 1Imported
Submitted name:
ATP-binding cassette, sub-family D (ALD), member 1 (Predicted)Imported
Gene namesi
Name:Abcd1Imported
Synonyms:Abcd1_predictedImported
ORF Names:rCG_43826Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi1562128 Abcd1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PeptideAtlasiD3ZHR2
PRIDEiD3ZHR2

Expressioni

Gene expression databases

BgeeiENSRNOG00000056524

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025863

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini100 – 336ABC transmembrane type-1InterPro annotationAdd BLAST237
Domaini475 – 730ABC transporterInterPro annotationAdd BLAST256

Phylogenomic databases

eggNOGiKOG0064 Eukaryota
COG4178 LUCA
GeneTreeiENSGT00390000003950
KOiK05675
OMAiPRVLCRE
OrthoDBiEOG091G04M1

Family and domain databases

InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR031237 ALDP
IPR005283 FA_transporter
IPR027417 P-loop_NTPase
PANTHERiPTHR11384:SF21 PTHR11384:SF21, 1 hit
PfamiView protein in Pfam
PF06472 ABC_membrane_2, 1 hit
PF00005 ABC_tran, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00954 3a01203, 1 hit
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 1 hit
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZHR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVLSTPSRP SRVTTLKRTA VVLALTAYGV HKIYPLVRQC LTPARGPQVP
60 70 80 90 100
AGESTQEASG ATTAKAGMNR VFLQRLLVLL RLLFPGVLCR ETGLLALHSA
110 120 130 140 150
ALVSRTFLSV YVARLDGRLA RCIVRKDPRA FSWQLLQWLL IALPATFINS
160 170 180 190 200
AIRYLEGQLA LSFRSRLVAH AYGLYFSQQT YYRVSNMDGR LRNPDQSLTE
210 220 230 240 250
DMVAFAASVA HLYSNLTKPL LDVAVTSYTL LRAARSRGAG TAWPSAIAGL
260 270 280 290 300
VVFLTANVLR AFSPKFGELV AEEARRKGEL RYMHSRVVAN SEEIAFYGGH
310 320 330 340 350
EVELALLQHS YQDLASQINL ILLERLWYVM LEQFLMKYVW SASGLLMVAV
360 370 380 390 400
PIITATGYAE SDSEAMKKAA LEMKEEELVS ERTEAFTIAR NLLTAAADAT
410 420 430 440 450
ERIMSSYKEV TELAGYTARV YEMFQVFEDV QHCRFKRTGD LEEAQAGPGS
460 470 480 490 500
MVHSGVHIEG PLKIQGQVVD VEQGIICENI PIITPTGEVV VASLNIRVEE
510 520 530 540 550
GMHLLITGPN GCGKSSLFRI LGGLWPTYSG VLYKPPPQRM FYIPQRPYMS
560 570 580 590 600
VGSLRDQVIY PDSAEDMRRK GCSEQQLEAI LGIVHLRHIL QREGGWEAVC
610 620 630 640 650
DWKDVLSGGE KQRIGMARMF YHRPKYALLD ECTSAVSIDV EGKIFQAAKD
660 670 680 690 700
AGISLLSITH RPSLWKYHTH LLQFDGEGGW KFEKLDSAAR LSLTEEKQRL
710 720 730
EQQLAGIPKM QGRLQELRQI LGEAAAPVQP LVPGIPT
Length:737
Mass (Da):81,938
Last modified:April 20, 2010 - v1
Checksum:iC399AAE141153D23
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC096338 Genomic DNA No translation available.
CH474099 Genomic DNA Translation: EDL85026.1
RefSeqiNP_001102291.1, NM_001108821.1
UniGeneiRn.163453

Genome annotation databases

EnsembliENSRNOT00000084088; ENSRNOP00000070359; ENSRNOG00000056524
GeneIDi363516
KEGGirno:363516

Similar proteinsi

Entry informationi

Entry nameiD3ZHR2_RAT
AccessioniPrimary (citable) accession number: D3ZHR2
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 23, 2018
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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