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Protein
Submitted name:

Protein Fam46a

Gene

Fam46a

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: Ensembl

GO - Biological processi

  1. regulation of blood coagulation Source: Ensembl
  2. regulation of gene expression Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Fam46aImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:Fam46aImported
Synonyms:RGD1311381_predictedImported
ORF Names:rCG_25484Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 8

Organism-specific databases

RGDi1311381. Fam46a.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00500000044785.
OMAiGHCLDYC.
OrthoDBiEOG74R1QS.
TreeFamiTF315239.

Family and domain databases

InterProiIPR012937. DUF1693.
[Graphical view]
PfamiPF07984. DUF1693. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZH34-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHQRYFWTDQ GQVAFGGHYM AESEGYFAMA EDELTGGPYI PLGGDFGGGG
60 70 80 90 100
SFGDRCSDYC ESPTAHCNVL NWEQVQRLDG ILSETIPIHG RGNFPTLELQ
110 120 130 140 150
PSLIVKVVRR RLEEKSIGVR DVRLNGSAAS HVLHQDSGLG YKDLDLIFCA
160 170 180 190 200
DLRGEEEFQT VKDVVLDCLL DFLPEGVNKE KITPLTLKEA YVQKMVKVCN
210 220 230 240 250
DSDRWSLISL SNNSGKNVEL KFVDSLRRQF EFSVDSFQIK LDSLLLFYEC
260 270 280 290 300
SENPMTETFH PTIIGESVYG DFHEAFDHLC NKIIATRNPE EIRGGGLLKY
310 320 330 340 350
CNLLVRGFRP ASEEIKTLQR YMCSRFFIDF SDIGEQQRKL ESYLQNHFVG
360 370 380 390 400
LEDRKYDYLM TLHGVVNEST VCLMGHERRQ TLNLITMLAI RVLADQNVIP
410 420 430 440
NVANVTCYYQ PAPYVADANF SNYYIAQVQP VFTCQQQTYS TWLPCN
Length:446
Mass (Da):50,766
Last modified:April 20, 2010 - v1
Checksum:i8B6761ABDB0FFF01
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06056174 Genomic DNA. No translation available.
CH473954 Genomic DNA. Translation: EDL77647.1.
RefSeqiNP_001100314.1. NM_001106844.1.
UniGeneiRn.788.

Genome annotation databases

EnsembliENSRNOT00000056937; ENSRNOP00000053775; ENSRNOG00000010240.
GeneIDi300870.
KEGGirno:300870.
UCSCiRGD:1311381. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06056174 Genomic DNA. No translation available.
CH473954 Genomic DNA. Translation: EDL77647.1.
RefSeqiNP_001100314.1. NM_001106844.1.
UniGeneiRn.788.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000056937; ENSRNOP00000053775; ENSRNOG00000010240.
GeneIDi300870.
KEGGirno:300870.
UCSCiRGD:1311381. rat.

Organism-specific databases

CTDi55603.
RGDi1311381. Fam46a.

Phylogenomic databases

GeneTreeiENSGT00500000044785.
OMAiGHCLDYC.
OrthoDBiEOG74R1QS.
TreeFamiTF315239.

Miscellaneous databases

NextBioi647674.

Family and domain databases

InterProiIPR012937. DUF1693.
[Graphical view]
PfamiPF07984. DUF1693. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZH34_RAT
AccessioniPrimary (citable) accession number: D3ZH34
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 4, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.