D3ZGQ8 (D3ZGQ8_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Rsf1 Ensembl ENSRNOP00000031549

Gene names

Name:

Rsf1 Ensembl ENSRNOP00000031549 RGD 1311245

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000031549

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1444 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000031549

Ontologies

Keywords
Domain	Zinc-finger SAAS SAAS019787
Ligand	Metal-binding Zinc
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: Compara chromatin remodeling Inferred from electronic annotation. Source: Compara negative regulation of DNA binding Inferred from electronic annotation. Source: Compara negative regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: Compara nucleosome assembly Inferred from electronic annotation. Source: Compara nucleosome positioning Inferred from electronic annotation. Source: Compara positive regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: Compara positive regulation of viral transcription Inferred from electronic annotation. Source: Compara
Cellular_component	RSF complex Inferred from electronic annotation. Source: Compara
Molecular_function	zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3ZGQ8 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: C802A9F1D093D532	FASTA	1,444	162,105
	10 20 30 40 50 60 MATVAAAAAA AVAAMAPPGC PGSCPNFAVV CSFLERYGPL LDLPELPFPE LERVLQAPPP 70 80 90 100 110 120 DIGHGEVPKE LVELHLKLMR KIGKSVTADR WEKYLIKICQ EFNSTWAWEM EKKGYLEMSV 130 140 150 160 170 180 ECKLALLKYL CECQFDDNLK FKNIINEEDA DTMRLQPIGR DKDGLMYWYQ LDQDHNVRMY 190 200 210 220 230 240 IEEQDDQDGS SWKCIVRNRN ELAETLALLR AQIDPVLLKN SSQQEDPSRE SPTLEDEETK 250 260 270 280 290 300 KDEETPKQEA SRGNEKTEAD ERSMDSRKRS AANALEGPAV KIEKADEKEL VKLPVIVKLE 310 320 330 340 350 360 KPVPETEDKK IIREESDSFK ENVKPIKVEA KECRVDPKDL KGSLERLGSQ EPERADFGSN 370 380 390 400 410 420 IKSSQDITEK STEETEKLKN DQQAKIPLKK REIKLSDDFD SPVKGHLCKS ATPTKECLKD 430 440 450 460 470 480 DVKQEEETCK RVSTISALSH EGKQLMNGEM NDDKVTASLK TEQLETQLCH TKEDSSSIPA 490 500 510 520 530 540 KDGSAGLEGS GVECLNSVLT STKTSELEKE VSLGKAVDGS ASDVESHSQK GRGEEPGPPN 550 560 570 580 590 600 MDMPLEPSEK TTDLSLKSTL SATESCPTKI EEKAPKSKGE NHTAGIECLE KVEKAKKTSV 610 620 630 640 650 660 DKDIQRLSPI PEEVVRGPLE SEESGLCEVA ETPLPLEMTG AKEKQTSEKK GVDCLSRGSS 670 680 690 700 710 720 EGQSLENASP DILRENSESS RVEMAKLDNA QTSGVEDTSQ TKGSVQKNKC KYKLVSEGNS 730 740 750 760 770 780 TASENTEITS ERKKEGIKLT IRISSRKKKP DCPPQIVDSE SKEEKAGKEE EKTSVGRTLR 790 800 810 820 830 840 RSPRISRPTA KVAEIRDQKA DKKRAEGEEG VEGETTSLQT ADKKEHLKKA EKDTNSKASK 850 860 870 880 890 900 VKPKGKVRWT GSRTRGRWKY SSNDESEGSE SDKSSAASEE EEGKESEEAV LPDDDEPCKK 910 920 930 940 950 960 CGLPNHPELI LLCDSCDSGY HTACLRPPLM IIPDGEWFCP PCQHKLLCEK LEEQLQDLDV 970 980 990 1000 1010 1020 ALKKKERAER RKERLVYVGI SIENIIPPQE PEFSEDQEEK KKDAKKSKAN VLERRSTRTR 1030 1040 1050 1060 1070 1080 KCISYRFDEF DEAIDEAIED DIKEADGGGV GRGKDISTIT GHRGKDISTI LDEERKENKR 1090 1100 1110 1120 1130 1140 PQRAAAARRK KRRRLNDLDS DSNLDEEESE DEFKISDGSQ DEFVVSDENP DESEEEPPSN 1150 1160 1170 1180 1190 1200 EDSDTDFCSR RLRRHPSRPM RQSRRLRRKT QKKKYSDDDE EEEESEENSR DSESDFSDDF 1210 1220 1230 1240 1250 1260 SDEFVETRRR RSRRNQKRQI NYKEDSESDG SQKSLRRGKE IRRVHKRRLS SSESEESYMS 1270 1280 1290 1300 1310 1320 KNSEDDELTK ESKRSIRKRG RSTGEYSEAD EEEEEEGKPS RKRLHRIETD EESCDSAHGD 1330 1340 1350 1360 1370 1380 ADQPARESQA SVLPSEQESS KKPYRIESDE EEDFENVGKV GSPLDYSLVD LPSTNGQSPG 1390 1400 1410 1420 1430 1440 KAIENLMGKA TEKSQTPKDN GTASANLAPN GTSGGQEVGA PEEDEDELLR VTDLVDYVCN SEQL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000031549.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000031549.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06007476 Genomic DNA. No translation available. AABR06007477 Genomic DNA. No translation available.
IPI	IPI00368441.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000037050; ENSRNOP00000031549; ENSRNOG00000024194.
UCSC	RGD:1311245. rat.
Organism-specific databases
RGD	1311245. Rsf1.
Phylogenomic databases
GeneTree	ENSGT00530000064411.
OrthoDB	EOG441QBQ.
Family and domain databases
Gene3D	3.30.40.10. 1 hit.
InterPro	IPR019786. Zinc_finger_PHD-type_CS. IPR011011. Znf_FYVE_PHD. IPR001965. Znf_PHD. IPR019787. Znf_PHD-finger. IPR013083. Znf_RING/FYVE/PHD. [Graphical view]
Pfam	PF00628. PHD. 1 hit. [Graphical view]
SMART	SM00249. PHD. 1 hit. [Graphical view]
SUPFAM	SSF57903. FYVE_PHD_ZnF. 1 hit.
PROSITE	PS01359. ZF_PHD_1. 1 hit. PS50016. ZF_PHD_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35567400.

Entry information

Entry name

D3ZGQ8_RAT

Accession

Primary (citable) accession number: D3ZGQ8

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	April 3, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)