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D3ZG78 (D3ZG78_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length2924 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000031588

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D3ZG78 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 2C87834AAAB250D6

FASTA2,924328,094
        10         20         30         40         50         60 
MGNAPSNSSE DEAAAAGGEG WSPHQDWAAD SGATPGPGPA AAVLPSAAAL LEPARLREAA 

        70         80         90        100        110        120 
AALRPAPPCE SLVSRHHGAL LRWLEERLGR GEESVTLEQF RELLEARGAG CSGEQFEEAF 

       130        140        150        160        170        180 
AQFDAEGDGT VDAENMLEAL KNSSGANLQG ELSHVIRQLQ ACSLVPGFID IFSESKEGLG 

       190        200        210        220        230        240 
THSSMILRFL HRNRVSSMVI PYPMLDHCNN MCTMRSSVLK DSLDQLLQKE KESPGDLARS 

       250        260        270        280        290        300 
PEMDKLKSVT KCYAYIETSS NPADIYRMTN GETSSYWQSD GSARSHWIRL KMKPDVVLRH 

       310        320        330        340        350        360 
LSIAVAATDQ SYMPQQVTVA VGRSASDLQE VRDVHIPSNV TGYVTLLENA NISQLYVQIN 

       370        380        390        400        410        420 
IKRCLSDGCD TRIHGLRAVG FQRVKKSGVS VSDASAIWYW SLLTSLVTAS METNPAFVQT 

       430        440        450        460        470        480 
VLHNTQKALQ HMPPLSLSPG STDFSTFLSP NVLEEVDSFL IRITSCCSTP EVELTLLAFA 

       490        500        510        520        530        540 
LARGSIAKVM SSLCAISDHL DTQYDASSLI SSMASVRQSL LLKYGKPLQL TLQACDVKGK 

       550        560        570        580        590        600 
EDKSGPENLL VEPWTRDGFL TETGKTRAST IFSAGTESAF QVTQIRIMVR RGGIGAQCGL 

       610        620        630        640        650        660 
VFAYNSPSDK FHAEEHFKRF EKYDRWKLQE LRQFVKSRIG CSPDDLGEDD PIGWFELEEE 

       670        680        690        700        710        720 
WDEADVKLQQ CRVAKFLMVK FLCTRQESAE RLGVQGLSIS GYLRPARAEA EQSILYAHCR 

       730        740        750        760        770        780 
RDTENIYGAT LLLRTLQFIQ QLAHDLVQQK ESGLKYKSFL DFAGLDLQIF WNFYSKLKQN 

       790        800        810        820        830        840 
PREECICAQT LLLQLLQSCF SVLQGDPQAV SEEEKPAAQR PEGIQAAKEL YTHLCDVVDR 

       850        860        870        880        890        900 
ADGESMPMEI LKQEVRNTLL NGAAIFFPDR QTRRNQLFTM MKNVTEHERK QSLQLTFRSL 

       910        920        930        940        950        960 
CTYFSDKDPG GLLLLPEKSD LATMNTSEVL AVMNTLLSVA ARECELLMLG RAHGEVGSVL 

       970        980        990       1000       1010       1020 
FSLFWSVQGS LLSWCFLQLK STDAAAKELA MDLIEKYVGQ FLASMRVILE SLLSQYSGKT 

      1030       1040       1050       1060       1070       1080 
IVEKLCNSVF SMAARQLVIF LLDFCTLDVS HCTLLREFST LTELLKKLCS DPEGGLSKLD 

      1090       1100       1110       1120       1130       1140 
VETWQQEQPV VLHTWTKEST HNYENNCHEV SVFVSPGATY FEVEFDERCE TEKRYDYLEF 

      1150       1160       1170       1180       1190       1200 
TDSRGGKTRY DTKVGTYKWP KKVTFKDGPR LQFLFHSDSS NNEWGYKFTV TAYGLPDVAV 

      1210       1220       1230       1240       1250       1260 
SWGLDLQLLV SRLMGRLASQ CMALKSVHQL GSNLAISQAK LTAVLNSPLW KPVFRHQICP 

      1270       1280       1290       1300       1310       1320 
ELELEASWPT HPHQDGKEVK NIPDDPCRHF LLDFAQSEPA QNFCGPYSEL FKGFIQACRK 

      1330       1340       1350       1360       1370       1380 
QAPKTDIVAG STIDQAVNAT FAALVYRTPD LYEKLQKYVH SGGKIALPEE FSQVYSLADG 

      1390       1400       1410       1420       1430       1440 
IRIWMLEMKQ KSLVSMGNDS EEKRGLETAE VNPENLAKEC IQKSLLLLKF LPMSKSSKEN 

      1450       1460       1470       1480       1490       1500 
CDKLVPVDET DRLQPLDRRQ RTSSVVEEHF QGSASPTEAA TPAADDKSPG LEMQPKLLPS 

      1510       1520       1530       1540       1550       1560 
SGPSAAEVST AEEPSSPSTP TRRPPFTRGR LRLLSFRSME ETRPVPTVKE KYPVLKDVMD 

      1570       1580       1590       1600       1610       1620 
FIKDQSLSHE SIVKVLSLRK AQAQSILEVL RIIQYCTESL GQPHCFHPPY ILFLLELLTC 

      1630       1640       1650       1660       1670       1680 
QKDFTNYFGH LEGCGADLHK EIRDTYYQLV LFLVKAIKGF SSINDRSLLP AVSCVQTALL 

      1690       1700       1710       1720       1730       1740 
HLLDMGWEPS DLAFFVDIQL PDLLMNMSQE NISIHDSVIS QWSEEDELAD AKQNSEWMDE 

      1750       1760       1770       1780       1790       1800 
CQDGMFEAWY EKIAQEDPEK QRKMHMFIAR YCDLLNVDIS CDGCDEIAPW HRYRCLQCSD 

      1810       1820       1830       1840       1850       1860 
MDLCKTCFLG GVKPEGHGDD HEMVNMEFTC DHCQGLIIGR RMNCNVCDDF DLCYGCYAAK 

      1870       1880       1890       1900       1910       1920 
KYSYGHLPTH SITAHPMVTI RISDRQRFIQ PYIHNYSWLL FAALALYSAH LTSTEHVDGE 

      1930       1940       1950       1960       1970       1980 
QLDPQARGSA ATLRSQCMQL VGDCLMKAHQ GKGLKALALL GVLPDGDSTS ENQALPVTVS 

      1990       2000       2010       2020       2030       2040 
IQASEEQADA GLFVPCNGKR ATDKEVGPLD CKQKKKAGED LSIMKDPSCQ IQVSDPPASD 

      2050       2060       2070       2080       2090       2100 
HVPPGLPDAE HPDRSSQAPM EEKAITPSPE QVFAECSQKR ILGLLAAMLP PIKSGPTVPL 

      2110       2120       2130       2140       2150       2160 
IDLEHVLPLM FQVVISNAGH LNETYHLTLG LLGQLIIRLQ PAEVDAAVMK VLSAKHNLRV 

      2170       2180       2190       2200       2210       2220 
GLDWACSMAE ILRSLNNAPL WRDVIATFTD HCIKQLPFQL KHTNIFTLLV LVGFPQVLCV 

      2230       2240       2250       2260       2270       2280 
GTRCVYMDNA NEPHNVIILK HFTEKNRAVI VDVKTRKRKT VKDYQLVQKG GGQECGTSQA 

      2290       2300       2310       2320       2330       2340 
QLSQYSQHFA FIASHLLQTS MDSHCPEAVE ATWVLSLALK GLYKTLKTHG FEETHATFLH 

      2350       2360       2370       2380       2390       2400 
TDLLKLLVKK CSKGTGFSKT WLLRDLEILS IMLYSSKKEI NTLTEHGDLE LDERGDQEEE 

      2410       2420       2430       2440       2450       2460 
LDRPVSSPGE AEQKKLDPLE SLDEPTRICF LMAHDALNAP LHILRAIYEL QMKKTDSFFL 

      2470       2480       2490       2500       2510       2520 
EVQKRFDGDE LTTDERIRSL AQRWQPSRSL RLEEQSAKAV DTDMIILPCL SRPARSDQAT 

      2530       2540       2550       2560       2570       2580 
SESNPVTQKL ISSTESELQQ SYAKQRRSKS AALLHKELNC KSKRAVRDYL FRVNEATAVL 

      2590       2600       2610       2620       2630       2640 
YARHVLASLL AEWPGHVPVS EDILELSGPA HMTYILDMFM QLEEKHQWEK ILQKVLQGCR 

      2650       2660       2670       2680       2690       2700 
ESMLGTMALA ACQFMEEPGM EVQVRESKHP YNNNTSFEDK VHIPGAIYLS IKFDPQCNTE 

      2710       2720       2730       2740       2750       2760 
EGCDELAMSS SSDFQQDRHN FSGSQQKWKD FELPGDTLYY RFTSDMSNTE WGYRFTVTAG 

      2770       2780       2790       2800       2810       2820 
HLGRFQTGFE ILKQMLSEER VVPHLPLGKI WEWLVGVACR QTGHQRLKAI HLLLRIVRCC 

      2830       2840       2850       2860       2870       2880 
SHSDLCDLGL LKPLWQLFTH MEYGLFEDVT QPGILLPLHR ALTELFFVTE NRAQELGLLQ 

      2890       2900       2910       2920 
EYLLALTTED HLLRCAAQAL QNIAAISLAI NYPNKATRLW NVEC 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000031588.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000031588.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06064491 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000036278; ENSRNOP00000031588; ENSRNOG00000024535.

Organism-specific databases

RGD1311189. Zzef1.

Phylogenomic databases

GeneTreeENSGT00700000104406.
OMAWMLEMKQ.
OrthoDBEOG76MK7D.
PhylomeDBD3ZG78.
TreeFamTF331572.

Family and domain databases

Gene3D1.10.238.10. 1 hit.
2.60.120.260. 1 hit.
2.60.120.290. 1 hit.
InterProIPR004939. APC_su10/DOC_dom.
IPR000859. CUB_dom.
IPR011992. EF-hand-dom_pair.
IPR002048. EF_hand_dom.
IPR008979. Galactose-bd-like.
IPR000433. Znf_ZZ.
[Graphical view]
PfamPF03256. APC10. 1 hit.
PF00569. ZZ. 2 hits.
[Graphical view]
SMARTSM00291. ZnF_ZZ. 2 hits.
[Graphical view]
SUPFAMSSF49785. SSF49785. 1 hit.
PROSITEPS51284. DOC. 1 hit.
PS50222. EF_HAND_2. 1 hit.
PS01357. ZF_ZZ_1. 1 hit.
PS50135. ZF_ZZ_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio35567288.

Entry information

Entry nameD3ZG78_RAT
AccessionPrimary (citable) accession number: D3ZG78
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)