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D3ZG78

- D3ZG78_RAT

UniProt

D3ZG78 - D3ZG78_RAT

Protein
Submitted name:

Protein Zzef1

Gene

Zzef1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. calcium ion binding Source: InterPro
    2. zinc ion binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Zzef1Imported
    Gene namesi
    Name:Zzef1Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 10

    Organism-specific databases

    RGDi1311189. Zzef1.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00700000104406.
    OMAiWMLEMKQ.
    OrthoDBiEOG76MK7D.
    PhylomeDBiD3ZG78.
    TreeFamiTF331572.

    Family and domain databases

    Gene3Di1.10.238.10. 1 hit.
    2.60.120.260. 1 hit.
    2.60.120.290. 1 hit.
    InterProiIPR004939. APC_su10/DOC_dom.
    IPR000859. CUB_dom.
    IPR011992. EF-hand-dom_pair.
    IPR002048. EF_hand_dom.
    IPR008979. Galactose-bd-like.
    IPR000433. Znf_ZZ.
    [Graphical view]
    PfamiPF03256. APC10. 1 hit.
    PF00569. ZZ. 2 hits.
    [Graphical view]
    SMARTiSM00291. ZnF_ZZ. 2 hits.
    [Graphical view]
    SUPFAMiSSF49785. SSF49785. 1 hit.
    PROSITEiPS51284. DOC. 1 hit.
    PS50222. EF_HAND_2. 1 hit.
    PS01357. ZF_ZZ_1. 1 hit.
    PS50135. ZF_ZZ_2. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZG78-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGNAPSNSSE DEAAAAGGEG WSPHQDWAAD SGATPGPGPA AAVLPSAAAL     50
    LEPARLREAA AALRPAPPCE SLVSRHHGAL LRWLEERLGR GEESVTLEQF 100
    RELLEARGAG CSGEQFEEAF AQFDAEGDGT VDAENMLEAL KNSSGANLQG 150
    ELSHVIRQLQ ACSLVPGFID IFSESKEGLG THSSMILRFL HRNRVSSMVI 200
    PYPMLDHCNN MCTMRSSVLK DSLDQLLQKE KESPGDLARS PEMDKLKSVT 250
    KCYAYIETSS NPADIYRMTN GETSSYWQSD GSARSHWIRL KMKPDVVLRH 300
    LSIAVAATDQ SYMPQQVTVA VGRSASDLQE VRDVHIPSNV TGYVTLLENA 350
    NISQLYVQIN IKRCLSDGCD TRIHGLRAVG FQRVKKSGVS VSDASAIWYW 400
    SLLTSLVTAS METNPAFVQT VLHNTQKALQ HMPPLSLSPG STDFSTFLSP 450
    NVLEEVDSFL IRITSCCSTP EVELTLLAFA LARGSIAKVM SSLCAISDHL 500
    DTQYDASSLI SSMASVRQSL LLKYGKPLQL TLQACDVKGK EDKSGPENLL 550
    VEPWTRDGFL TETGKTRAST IFSAGTESAF QVTQIRIMVR RGGIGAQCGL 600
    VFAYNSPSDK FHAEEHFKRF EKYDRWKLQE LRQFVKSRIG CSPDDLGEDD 650
    PIGWFELEEE WDEADVKLQQ CRVAKFLMVK FLCTRQESAE RLGVQGLSIS 700
    GYLRPARAEA EQSILYAHCR RDTENIYGAT LLLRTLQFIQ QLAHDLVQQK 750
    ESGLKYKSFL DFAGLDLQIF WNFYSKLKQN PREECICAQT LLLQLLQSCF 800
    SVLQGDPQAV SEEEKPAAQR PEGIQAAKEL YTHLCDVVDR ADGESMPMEI 850
    LKQEVRNTLL NGAAIFFPDR QTRRNQLFTM MKNVTEHERK QSLQLTFRSL 900
    CTYFSDKDPG GLLLLPEKSD LATMNTSEVL AVMNTLLSVA ARECELLMLG 950
    RAHGEVGSVL FSLFWSVQGS LLSWCFLQLK STDAAAKELA MDLIEKYVGQ 1000
    FLASMRVILE SLLSQYSGKT IVEKLCNSVF SMAARQLVIF LLDFCTLDVS 1050
    HCTLLREFST LTELLKKLCS DPEGGLSKLD VETWQQEQPV VLHTWTKEST 1100
    HNYENNCHEV SVFVSPGATY FEVEFDERCE TEKRYDYLEF TDSRGGKTRY 1150
    DTKVGTYKWP KKVTFKDGPR LQFLFHSDSS NNEWGYKFTV TAYGLPDVAV 1200
    SWGLDLQLLV SRLMGRLASQ CMALKSVHQL GSNLAISQAK LTAVLNSPLW 1250
    KPVFRHQICP ELELEASWPT HPHQDGKEVK NIPDDPCRHF LLDFAQSEPA 1300
    QNFCGPYSEL FKGFIQACRK QAPKTDIVAG STIDQAVNAT FAALVYRTPD 1350
    LYEKLQKYVH SGGKIALPEE FSQVYSLADG IRIWMLEMKQ KSLVSMGNDS 1400
    EEKRGLETAE VNPENLAKEC IQKSLLLLKF LPMSKSSKEN CDKLVPVDET 1450
    DRLQPLDRRQ RTSSVVEEHF QGSASPTEAA TPAADDKSPG LEMQPKLLPS 1500
    SGPSAAEVST AEEPSSPSTP TRRPPFTRGR LRLLSFRSME ETRPVPTVKE 1550
    KYPVLKDVMD FIKDQSLSHE SIVKVLSLRK AQAQSILEVL RIIQYCTESL 1600
    GQPHCFHPPY ILFLLELLTC QKDFTNYFGH LEGCGADLHK EIRDTYYQLV 1650
    LFLVKAIKGF SSINDRSLLP AVSCVQTALL HLLDMGWEPS DLAFFVDIQL 1700
    PDLLMNMSQE NISIHDSVIS QWSEEDELAD AKQNSEWMDE CQDGMFEAWY 1750
    EKIAQEDPEK QRKMHMFIAR YCDLLNVDIS CDGCDEIAPW HRYRCLQCSD 1800
    MDLCKTCFLG GVKPEGHGDD HEMVNMEFTC DHCQGLIIGR RMNCNVCDDF 1850
    DLCYGCYAAK KYSYGHLPTH SITAHPMVTI RISDRQRFIQ PYIHNYSWLL 1900
    FAALALYSAH LTSTEHVDGE QLDPQARGSA ATLRSQCMQL VGDCLMKAHQ 1950
    GKGLKALALL GVLPDGDSTS ENQALPVTVS IQASEEQADA GLFVPCNGKR 2000
    ATDKEVGPLD CKQKKKAGED LSIMKDPSCQ IQVSDPPASD HVPPGLPDAE 2050
    HPDRSSQAPM EEKAITPSPE QVFAECSQKR ILGLLAAMLP PIKSGPTVPL 2100
    IDLEHVLPLM FQVVISNAGH LNETYHLTLG LLGQLIIRLQ PAEVDAAVMK 2150
    VLSAKHNLRV GLDWACSMAE ILRSLNNAPL WRDVIATFTD HCIKQLPFQL 2200
    KHTNIFTLLV LVGFPQVLCV GTRCVYMDNA NEPHNVIILK HFTEKNRAVI 2250
    VDVKTRKRKT VKDYQLVQKG GGQECGTSQA QLSQYSQHFA FIASHLLQTS 2300
    MDSHCPEAVE ATWVLSLALK GLYKTLKTHG FEETHATFLH TDLLKLLVKK 2350
    CSKGTGFSKT WLLRDLEILS IMLYSSKKEI NTLTEHGDLE LDERGDQEEE 2400
    LDRPVSSPGE AEQKKLDPLE SLDEPTRICF LMAHDALNAP LHILRAIYEL 2450
    QMKKTDSFFL EVQKRFDGDE LTTDERIRSL AQRWQPSRSL RLEEQSAKAV 2500
    DTDMIILPCL SRPARSDQAT SESNPVTQKL ISSTESELQQ SYAKQRRSKS 2550
    AALLHKELNC KSKRAVRDYL FRVNEATAVL YARHVLASLL AEWPGHVPVS 2600
    EDILELSGPA HMTYILDMFM QLEEKHQWEK ILQKVLQGCR ESMLGTMALA 2650
    ACQFMEEPGM EVQVRESKHP YNNNTSFEDK VHIPGAIYLS IKFDPQCNTE 2700
    EGCDELAMSS SSDFQQDRHN FSGSQQKWKD FELPGDTLYY RFTSDMSNTE 2750
    WGYRFTVTAG HLGRFQTGFE ILKQMLSEER VVPHLPLGKI WEWLVGVACR 2800
    QTGHQRLKAI HLLLRIVRCC SHSDLCDLGL LKPLWQLFTH MEYGLFEDVT 2850
    QPGILLPLHR ALTELFFVTE NRAQELGLLQ EYLLALTTED HLLRCAAQAL 2900
    QNIAAISLAI NYPNKATRLW NVEC 2924
    Length:2,924
    Mass (Da):328,094
    Last modified:April 20, 2010 - v1
    Checksum:i2C87834AAAB250D6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06064491 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000036278; ENSRNOP00000031588; ENSRNOG00000024535.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06064491 Genomic DNA. No translation available.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000036278 ; ENSRNOP00000031588 ; ENSRNOG00000024535 .

    Organism-specific databases

    RGDi 1311189. Zzef1.

    Phylogenomic databases

    GeneTreei ENSGT00700000104406.
    OMAi WMLEMKQ.
    OrthoDBi EOG76MK7D.
    PhylomeDBi D3ZG78.
    TreeFami TF331572.

    Miscellaneous databases

    NextBioi 35567288.

    Family and domain databases

    Gene3Di 1.10.238.10. 1 hit.
    2.60.120.260. 1 hit.
    2.60.120.290. 1 hit.
    InterProi IPR004939. APC_su10/DOC_dom.
    IPR000859. CUB_dom.
    IPR011992. EF-hand-dom_pair.
    IPR002048. EF_hand_dom.
    IPR008979. Galactose-bd-like.
    IPR000433. Znf_ZZ.
    [Graphical view ]
    Pfami PF03256. APC10. 1 hit.
    PF00569. ZZ. 2 hits.
    [Graphical view ]
    SMARTi SM00291. ZnF_ZZ. 2 hits.
    [Graphical view ]
    SUPFAMi SSF49785. SSF49785. 1 hit.
    PROSITEi PS51284. DOC. 1 hit.
    PS50222. EF_HAND_2. 1 hit.
    PS01357. ZF_ZZ_1. 1 hit.
    PS50135. ZF_ZZ_2. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZG78_RAT
    AccessioniPrimary (citable) accession number: D3ZG78
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3