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D3ZG78

- D3ZG78_RAT

UniProt

D3ZG78 - D3ZG78_RAT

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Protein
Submitted name: Protein Zzef1
Gene
Zzef1
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. zinc ion binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zzef1Imported
Gene namesi
Name:Zzef1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 10

Organism-specific databases

RGDi1311189. Zzef1.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00700000104406.
OMAiWMLEMKQ.
OrthoDBiEOG76MK7D.
PhylomeDBiD3ZG78.
TreeFamiTF331572.

Family and domain databases

Gene3Di1.10.238.10. 1 hit.
2.60.120.260. 1 hit.
2.60.120.290. 1 hit.
InterProiIPR004939. APC_su10/DOC_dom.
IPR000859. CUB_dom.
IPR011992. EF-hand-dom_pair.
IPR002048. EF_hand_dom.
IPR008979. Galactose-bd-like.
IPR000433. Znf_ZZ.
[Graphical view]
PfamiPF03256. APC10. 1 hit.
PF00569. ZZ. 2 hits.
[Graphical view]
SMARTiSM00291. ZnF_ZZ. 2 hits.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
PROSITEiPS51284. DOC. 1 hit.
PS50222. EF_HAND_2. 1 hit.
PS01357. ZF_ZZ_1. 1 hit.
PS50135. ZF_ZZ_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZG78-1 [UniParc]FASTAAdd to Basket

« Hide

MGNAPSNSSE DEAAAAGGEG WSPHQDWAAD SGATPGPGPA AAVLPSAAAL     50
LEPARLREAA AALRPAPPCE SLVSRHHGAL LRWLEERLGR GEESVTLEQF 100
RELLEARGAG CSGEQFEEAF AQFDAEGDGT VDAENMLEAL KNSSGANLQG 150
ELSHVIRQLQ ACSLVPGFID IFSESKEGLG THSSMILRFL HRNRVSSMVI 200
PYPMLDHCNN MCTMRSSVLK DSLDQLLQKE KESPGDLARS PEMDKLKSVT 250
KCYAYIETSS NPADIYRMTN GETSSYWQSD GSARSHWIRL KMKPDVVLRH 300
LSIAVAATDQ SYMPQQVTVA VGRSASDLQE VRDVHIPSNV TGYVTLLENA 350
NISQLYVQIN IKRCLSDGCD TRIHGLRAVG FQRVKKSGVS VSDASAIWYW 400
SLLTSLVTAS METNPAFVQT VLHNTQKALQ HMPPLSLSPG STDFSTFLSP 450
NVLEEVDSFL IRITSCCSTP EVELTLLAFA LARGSIAKVM SSLCAISDHL 500
DTQYDASSLI SSMASVRQSL LLKYGKPLQL TLQACDVKGK EDKSGPENLL 550
VEPWTRDGFL TETGKTRAST IFSAGTESAF QVTQIRIMVR RGGIGAQCGL 600
VFAYNSPSDK FHAEEHFKRF EKYDRWKLQE LRQFVKSRIG CSPDDLGEDD 650
PIGWFELEEE WDEADVKLQQ CRVAKFLMVK FLCTRQESAE RLGVQGLSIS 700
GYLRPARAEA EQSILYAHCR RDTENIYGAT LLLRTLQFIQ QLAHDLVQQK 750
ESGLKYKSFL DFAGLDLQIF WNFYSKLKQN PREECICAQT LLLQLLQSCF 800
SVLQGDPQAV SEEEKPAAQR PEGIQAAKEL YTHLCDVVDR ADGESMPMEI 850
LKQEVRNTLL NGAAIFFPDR QTRRNQLFTM MKNVTEHERK QSLQLTFRSL 900
CTYFSDKDPG GLLLLPEKSD LATMNTSEVL AVMNTLLSVA ARECELLMLG 950
RAHGEVGSVL FSLFWSVQGS LLSWCFLQLK STDAAAKELA MDLIEKYVGQ 1000
FLASMRVILE SLLSQYSGKT IVEKLCNSVF SMAARQLVIF LLDFCTLDVS 1050
HCTLLREFST LTELLKKLCS DPEGGLSKLD VETWQQEQPV VLHTWTKEST 1100
HNYENNCHEV SVFVSPGATY FEVEFDERCE TEKRYDYLEF TDSRGGKTRY 1150
DTKVGTYKWP KKVTFKDGPR LQFLFHSDSS NNEWGYKFTV TAYGLPDVAV 1200
SWGLDLQLLV SRLMGRLASQ CMALKSVHQL GSNLAISQAK LTAVLNSPLW 1250
KPVFRHQICP ELELEASWPT HPHQDGKEVK NIPDDPCRHF LLDFAQSEPA 1300
QNFCGPYSEL FKGFIQACRK QAPKTDIVAG STIDQAVNAT FAALVYRTPD 1350
LYEKLQKYVH SGGKIALPEE FSQVYSLADG IRIWMLEMKQ KSLVSMGNDS 1400
EEKRGLETAE VNPENLAKEC IQKSLLLLKF LPMSKSSKEN CDKLVPVDET 1450
DRLQPLDRRQ RTSSVVEEHF QGSASPTEAA TPAADDKSPG LEMQPKLLPS 1500
SGPSAAEVST AEEPSSPSTP TRRPPFTRGR LRLLSFRSME ETRPVPTVKE 1550
KYPVLKDVMD FIKDQSLSHE SIVKVLSLRK AQAQSILEVL RIIQYCTESL 1600
GQPHCFHPPY ILFLLELLTC QKDFTNYFGH LEGCGADLHK EIRDTYYQLV 1650
LFLVKAIKGF SSINDRSLLP AVSCVQTALL HLLDMGWEPS DLAFFVDIQL 1700
PDLLMNMSQE NISIHDSVIS QWSEEDELAD AKQNSEWMDE CQDGMFEAWY 1750
EKIAQEDPEK QRKMHMFIAR YCDLLNVDIS CDGCDEIAPW HRYRCLQCSD 1800
MDLCKTCFLG GVKPEGHGDD HEMVNMEFTC DHCQGLIIGR RMNCNVCDDF 1850
DLCYGCYAAK KYSYGHLPTH SITAHPMVTI RISDRQRFIQ PYIHNYSWLL 1900
FAALALYSAH LTSTEHVDGE QLDPQARGSA ATLRSQCMQL VGDCLMKAHQ 1950
GKGLKALALL GVLPDGDSTS ENQALPVTVS IQASEEQADA GLFVPCNGKR 2000
ATDKEVGPLD CKQKKKAGED LSIMKDPSCQ IQVSDPPASD HVPPGLPDAE 2050
HPDRSSQAPM EEKAITPSPE QVFAECSQKR ILGLLAAMLP PIKSGPTVPL 2100
IDLEHVLPLM FQVVISNAGH LNETYHLTLG LLGQLIIRLQ PAEVDAAVMK 2150
VLSAKHNLRV GLDWACSMAE ILRSLNNAPL WRDVIATFTD HCIKQLPFQL 2200
KHTNIFTLLV LVGFPQVLCV GTRCVYMDNA NEPHNVIILK HFTEKNRAVI 2250
VDVKTRKRKT VKDYQLVQKG GGQECGTSQA QLSQYSQHFA FIASHLLQTS 2300
MDSHCPEAVE ATWVLSLALK GLYKTLKTHG FEETHATFLH TDLLKLLVKK 2350
CSKGTGFSKT WLLRDLEILS IMLYSSKKEI NTLTEHGDLE LDERGDQEEE 2400
LDRPVSSPGE AEQKKLDPLE SLDEPTRICF LMAHDALNAP LHILRAIYEL 2450
QMKKTDSFFL EVQKRFDGDE LTTDERIRSL AQRWQPSRSL RLEEQSAKAV 2500
DTDMIILPCL SRPARSDQAT SESNPVTQKL ISSTESELQQ SYAKQRRSKS 2550
AALLHKELNC KSKRAVRDYL FRVNEATAVL YARHVLASLL AEWPGHVPVS 2600
EDILELSGPA HMTYILDMFM QLEEKHQWEK ILQKVLQGCR ESMLGTMALA 2650
ACQFMEEPGM EVQVRESKHP YNNNTSFEDK VHIPGAIYLS IKFDPQCNTE 2700
EGCDELAMSS SSDFQQDRHN FSGSQQKWKD FELPGDTLYY RFTSDMSNTE 2750
WGYRFTVTAG HLGRFQTGFE ILKQMLSEER VVPHLPLGKI WEWLVGVACR 2800
QTGHQRLKAI HLLLRIVRCC SHSDLCDLGL LKPLWQLFTH MEYGLFEDVT 2850
QPGILLPLHR ALTELFFVTE NRAQELGLLQ EYLLALTTED HLLRCAAQAL 2900
QNIAAISLAI NYPNKATRLW NVEC 2924
Length:2,924
Mass (Da):328,094
Last modified:April 20, 2010 - v1
Checksum:i2C87834AAAB250D6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06064491 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000036278; ENSRNOP00000031588; ENSRNOG00000024535.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06064491 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000036278 ; ENSRNOP00000031588 ; ENSRNOG00000024535 .

Organism-specific databases

RGDi 1311189. Zzef1.

Phylogenomic databases

GeneTreei ENSGT00700000104406.
OMAi WMLEMKQ.
OrthoDBi EOG76MK7D.
PhylomeDBi D3ZG78.
TreeFami TF331572.

Miscellaneous databases

NextBioi 35567288.

Family and domain databases

Gene3Di 1.10.238.10. 1 hit.
2.60.120.260. 1 hit.
2.60.120.290. 1 hit.
InterProi IPR004939. APC_su10/DOC_dom.
IPR000859. CUB_dom.
IPR011992. EF-hand-dom_pair.
IPR002048. EF_hand_dom.
IPR008979. Galactose-bd-like.
IPR000433. Znf_ZZ.
[Graphical view ]
Pfami PF03256. APC10. 1 hit.
PF00569. ZZ. 2 hits.
[Graphical view ]
SMARTi SM00291. ZnF_ZZ. 2 hits.
[Graphical view ]
SUPFAMi SSF49785. SSF49785. 1 hit.
PROSITEi PS51284. DOC. 1 hit.
PS50222. EF_HAND_2. 1 hit.
PS01357. ZF_ZZ_1. 1 hit.
PS50135. ZF_ZZ_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZG78_RAT
AccessioniPrimary (citable) accession number: D3ZG78
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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