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Protein
Submitted name:

Protein Spcs1

Gene

Spcs1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-RNO-422085. Synthesis, secretion, and deacylation of Ghrelin.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Spcs1Imported
Submitted name:
RCG42279Imported
Gene namesi
Name:Spcs1Imported
ORF Names:rCG_42279Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 16

Organism-specific databases

RGDi1309125. Spcs1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei83 – 101HelicalSequence analysisAdd BLAST19
Transmembranei107 – 127HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PeptideAtlasiD3ZFK5.

Expressioni

Gene expression databases

BgeeiENSRNOG00000018075.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024447.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG4112. Eukaryota.
ENOG411274V. LUCA.
GeneTreeiENSGT00390000018321.
InParanoidiD3ZFK5.
OMAiPTIPESH.
OrthoDBiEOG091G116R.
PhylomeDBiD3ZFK5.
TreeFamiTF106122.

Family and domain databases

InterProiIPR009542. SPC12.
[Graphical view]
PANTHERiPTHR13202. PTHR13202. 1 hit.
PfamiPF06645. SPC12. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZFK5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARGGARGCA SPSETSASGA TAEERRLAGR PGCFRYRTSQ ATLLNSQLPS
60 70 80 90 100
FHCRYQSSAT MLEHLSSLPT QMDYKGQKLA EQMFQGIILF SAIVGFIYGY
110 120 130 140 150
VAEQFGWTVY IVMAGFAFSC LLTLPPWPIY RRHPLKWLPV QDSGTEDKKS
160
GDRKIKRHAK NN
Length:162
Mass (Da):18,100
Last modified:July 22, 2015 - v3
Checksum:i891A9EE9C8C5000E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC121615 Genomic DNA. No translation available.
CH474046 Genomic DNA. Translation: EDL88972.1.
UniGeneiRn.3781.

Genome annotation databases

EnsembliENSRNOT00000024447; ENSRNOP00000024447; ENSRNOG00000018075.
UCSCiRGD:1309125. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC121615 Genomic DNA. No translation available.
CH474046 Genomic DNA. Translation: EDL88972.1.
UniGeneiRn.3781.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024447.

Proteomic databases

PeptideAtlasiD3ZFK5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000024447; ENSRNOP00000024447; ENSRNOG00000018075.
UCSCiRGD:1309125. rat.

Organism-specific databases

RGDi1309125. Spcs1.

Phylogenomic databases

eggNOGiKOG4112. Eukaryota.
ENOG411274V. LUCA.
GeneTreeiENSGT00390000018321.
InParanoidiD3ZFK5.
OMAiPTIPESH.
OrthoDBiEOG091G116R.
PhylomeDBiD3ZFK5.
TreeFamiTF106122.

Enzyme and pathway databases

ReactomeiR-RNO-422085. Synthesis, secretion, and deacylation of Ghrelin.

Gene expression databases

BgeeiENSRNOG00000018075.

Family and domain databases

InterProiIPR009542. SPC12.
[Graphical view]
PANTHERiPTHR13202. PTHR13202. 1 hit.
PfamiPF06645. SPC12. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZFK5_RAT
AccessioniPrimary (citable) accession number: D3ZFK5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: July 22, 2015
Last modified: November 2, 2016
This is version 54 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.