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D3ZEB9

- D3ZEB9_RAT

UniProt

D3ZEB9 - D3ZEB9_RAT

Protein
Submitted name:

Histone methyltransferase Pr-set7/Set8

Gene

LOC100909949

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. histone-lysine N-methyltransferase activity Source: InterPro

    Keywords - Molecular functioni

    MethyltransferaseImported, Transferase

    Enzyme and pathway databases

    ReactomeiREACT_198737. Condensation of Prophase Chromosomes.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Histone methyltransferase Pr-set7/Set8Imported
    Submitted name:
    Protein LOC100909949Imported
    Gene namesi
    Name:LOC100909949Imported
    Synonyms:Pr-set7Imported, Setd8Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 12

    Organism-specific databases

    RGDi6501036. LOC100909949.
    1587560. Setd8.

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation
    Contains SET domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00410000025501.
    KOiK11428.
    OMAiCSGMRSP.
    OrthoDBiEOG70KGRN.

    Family and domain databases

    InterProiIPR016858. Hist_H4-K20_MeTrfase.
    IPR001214. SET_dom.
    [Graphical view]
    PfamiPF00856. SET. 1 hit.
    [Graphical view]
    PIRSFiPIRSF027717. Histone_H4-K20_mtfrase. 1 hit.
    SMARTiSM00317. SET. 1 hit.
    [Graphical view]
    PROSITEiPS51571. SAM_MT43_PR_SET. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZEB9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVERRGPGRP RSDGENVFAG QSKIYAYMSP NKCSGMRSPL QEENSVAHHE    50
    VKCPGKPLAG IYRKREEKRN AGNVIRSAVK SEEQKSKDTR RGPLAPFPNQ 100
    KPEATEPPKT PPPSCDSTSV AVAKQALKKP LKGKQAPRKK SQGKTQQNRK 150
    LTDFYPVRRS SRKSKAELQS EERKKIDELI ESGKEEGMKI DLIDGKGRGV 200
    IATKRFSRGD FVVEYHGDLI EITDAKKREA LYAQDPSTGC YMYYFQYLSK 250
    TYCVDATQET NRLGRLINHS KCGNCQTKLH DIDGVPHLIL IASRDIAAGE 300
    ELLYDYGDRS KASIEAYPWL KH 322
    Length:322
    Mass (Da):36,216
    Last modified:April 3, 2013 - v2
    Checksum:iBB07F0BC32F9A066
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06071938 Genomic DNA. No translation available.
    AABR06071939 Genomic DNA. No translation available.
    AABR06071940 Genomic DNA. No translation available.
    AB606422 mRNA. Translation: BAK43219.1.
    RefSeqiNP_001233594.1. NM_001246665.1.
    UniGeneiRn.8879.

    Genome annotation databases

    EnsembliENSRNOT00000066253; ENSRNOP00000062763; ENSRNOG00000001062.
    GeneIDi689820.
    KEGGirno:689820.
    UCSCiRGD:1587560. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06071938 Genomic DNA. No translation available.
    AABR06071939 Genomic DNA. No translation available.
    AABR06071940 Genomic DNA. No translation available.
    AB606422 mRNA. Translation: BAK43219.1 .
    RefSeqi NP_001233594.1. NM_001246665.1.
    UniGenei Rn.8879.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000066253 ; ENSRNOP00000062763 ; ENSRNOG00000001062 .
    GeneIDi 689820.
    KEGGi rno:689820.
    UCSCi RGD:1587560. rat.

    Organism-specific databases

    CTDi 387893.
    RGDi 6501036. LOC100909949.
    1587560. Setd8.

    Phylogenomic databases

    GeneTreei ENSGT00410000025501.
    KOi K11428.
    OMAi CSGMRSP.
    OrthoDBi EOG70KGRN.

    Enzyme and pathway databases

    Reactomei REACT_198737. Condensation of Prophase Chromosomes.

    Miscellaneous databases

    NextBioi 739546.

    Family and domain databases

    InterProi IPR016858. Hist_H4-K20_MeTrfase.
    IPR001214. SET_dom.
    [Graphical view ]
    Pfami PF00856. SET. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF027717. Histone_H4-K20_mtfrase. 1 hit.
    SMARTi SM00317. SET. 1 hit.
    [Graphical view ]
    PROSITEi PS51571. SAM_MT43_PR_SET. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. "Histone methyltransferase Pr-set7 represses the promoter activity of the tumor marker gene."
      Osada S., Hashizume H., Gomita U., Imagawa M.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: LiverImported.
    3. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZEB9_RAT
    AccessioniPrimary (citable) accession number: D3ZEB9
    Secondary accession number(s): F7J138
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 32 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3