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Protein
Submitted name:

Protein Tsc22d2

Gene

Tsc22d2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Tsc22d2Imported
Gene namesi
Name:Tsc22d2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1593169. Tsc22d2.

PTM / Processingi

Proteomic databases

PaxDbiD3ZDW3.

Expressioni

Gene expression databases

ExpressionAtlasiD3ZDW3. baseline.
GenevisibleiD3ZDW3. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000062527.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili690 – 72435Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG4797. Eukaryota.
ENOG410YCNM. LUCA.
GeneTreeiENSGT00530000063062.
InParanoidiD3ZDW3.
OMAiSMQGAHG.
OrthoDBiEOG7RZ5PT.
TreeFamiTF318837.

Family and domain databases

InterProiIPR000580. TSC-22_Dip_Bun.
[Graphical view]
PANTHERiPTHR12348. PTHR12348. 1 hit.
PfamiPF01166. TSC22. 1 hit.
[Graphical view]
ProDomiPD007152. TSC-22_Dip_Bun. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01289. TSC22. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZDW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKMPAKKKS CFQITSVTTA QVATSITEDT ESLDDPDESR TEDVSSEIFD
60 70 80 90 100
VSRATDYGPE EVCERSSSEE TLNNVGDAET PGTVSPNLIL DGQLAAASAV
110 120 130 140 150
PANGGGGVPA RSVAGALSQT LAAVATSVSA PGPSSATPSQ PPATCSSRFR
160 170 180 190 200
VIKLDHGSGE PYRRGRWTCM EYYERDSDSS VLSRSGDCIR HSNTLEQTAE
210 220 230 240 250
RDSGLGATGG SVVVVVASMQ GAHGLDSGTD SSLTAVSQLP PSEKMSQPTL
260 270 280 290 300
AQPQSFSVGQ PQPPPPVGGA VAPSSVSLPL FPGAATGSQP MTAATQPTQL
310 320 330 340 350
QGAVAGGALP GPVGQGLPPP PNVNLAQPVA LTAQPGPAVG SSLSQQFAYP
360 370 380 390 400
QPPIPPGHLL PVQPSGQSEY LPPHVALQPP SPAQPLSTSA SATSASAASF
410 420 430 440 450
PLGSGQSVSS LGAQMMGASA QPSEVVAPGP VPVGQAAPCQ PAGVAPAAIG
460 470 480 490 500
GVVQPGSGLT GVGQPQSVQP PPHMGGSVQL SAVPGGPHTV VPGVPNVPAA
510 520 530 540 550
VPVPSVPVVP TTSVTMPNVP APLGQSQQLS GHTPVSRSSS VIQQVGPPLA
560 570 580 590 600
QGTHSAPTSL PQSDLSQFQT QTQSLVRQID DTRRKSEPLP QAPLSLIAEN
610 620 630 640 650
KPVVKPPVAD ALANPLQLTP MNSLATSVFS IAIPVDGDED RNPSTAFYQA
660 670 680 690 700
FHLNTFQESK SLWDSASGGG VVAIDNKIEQ AMDLVKSHLM YAVREEVEVL
710 720 730 740 750
KEQIKELVER NSLLERENAL LKSLSNNDQL SQLPAQQANP GSTSQQQAMI
760
AQPPQPTQPP QQPNVSSA
Length:768
Mass (Da):78,418
Last modified:April 20, 2010 - v1
Checksum:i28EC7D4B33BF4F1B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07010710 Genomic DNA. No translation available.
AABR07010711 Genomic DNA. No translation available.
RefSeqiNP_001178889.1. NM_001191960.1.
UniGeneiRn.167784.

Genome annotation databases

EnsembliENSRNOT00000015119; ENSRNOP00000062527; ENSRNOG00000038044.
GeneIDi499624.
KEGGirno:499624.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07010710 Genomic DNA. No translation available.
AABR07010711 Genomic DNA. No translation available.
RefSeqiNP_001178889.1. NM_001191960.1.
UniGeneiRn.167784.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000062527.

Proteomic databases

PaxDbiD3ZDW3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000015119; ENSRNOP00000062527; ENSRNOG00000038044.
GeneIDi499624.
KEGGirno:499624.

Organism-specific databases

CTDi9819.
RGDi1593169. Tsc22d2.

Phylogenomic databases

eggNOGiKOG4797. Eukaryota.
ENOG410YCNM. LUCA.
GeneTreeiENSGT00530000063062.
InParanoidiD3ZDW3.
OMAiSMQGAHG.
OrthoDBiEOG7RZ5PT.
TreeFamiTF318837.

Gene expression databases

ExpressionAtlasiD3ZDW3. baseline.
GenevisibleiD3ZDW3. RN.

Family and domain databases

InterProiIPR000580. TSC-22_Dip_Bun.
[Graphical view]
PANTHERiPTHR12348. PTHR12348. 1 hit.
PfamiPF01166. TSC22. 1 hit.
[Graphical view]
ProDomiPD007152. TSC-22_Dip_Bun. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01289. TSC22. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZDW3_RAT
AccessioniPrimary (citable) accession number: D3ZDW3
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: June 8, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.