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D3ZD09

- D3ZD09_RAT

UniProt

D3ZD09 - D3ZD09_RAT

Protein
Submitted name:

Cytochrome c oxidase subunit 6B1

Gene

LOC681754

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
  1. Functioni

    GO - Molecular functioni

    1. cytochrome-c oxidase activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Cytochrome c oxidase subunit 6B1Imported
    Submitted name:
    Protein LOC688869Imported
    Gene namesi
    Name:LOC681754Imported
    Synonyms:Cox6b1Imported, LOC688869Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 1

    Organism-specific databases

    RGDi1584097. Cox6b1.
    1591649. LOC681754.

    Subcellular locationi

    GO - Cellular componenti

    1. mitochondrion Source: InterPro

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000001191.
    KOiK02267.
    OMAiFKFVTGG.
    OrthoDBiEOG7WDN54.
    TreeFamiTF105065.

    Family and domain databases

    Gene3Di1.10.10.140. 1 hit.
    InterProiIPR003213. Cyt_c_oxidase_su6B.
    [Graphical view]
    PfamiPF02297. COX6B. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000278. Cyt_c_oxidase_6B. 1 hit.
    SUPFAMiSSF47694. SSF47694. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D3ZD09-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAEDIKTKIK NYKTAPFDSR FPNQNQTKNC WQNYLDFHRC EKAMTAKGGD   50
    VSVCEWYRRV YKSLCPVSWV SAWDDRIAEG TFPGKI 86
    Length:86
    Mass (Da):10,071
    Last modified:April 20, 2010 - v1
    Checksum:iA2E96D96CC37509A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06004293 Genomic DNA. No translation available.
    AABR06004294 Genomic DNA. No translation available.
    AABR06019897 Genomic DNA. No translation available.
    RefSeqiNP_001138745.1. NM_001145273.1.
    XP_006228857.1. XM_006228795.1.
    UniGeneiRn.161837.

    Genome annotation databases

    EnsembliENSRNOT00000032026; ENSRNOP00000030997; ENSRNOG00000024309.
    ENSRNOT00000045155; ENSRNOP00000048723; ENSRNOG00000034161.
    GeneIDi688869.
    KEGGirno:688869.
    UCSCiRGD:1584097. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06004293 Genomic DNA. No translation available.
    AABR06004294 Genomic DNA. No translation available.
    AABR06019897 Genomic DNA. No translation available.
    RefSeqi NP_001138745.1. NM_001145273.1.
    XP_006228857.1. XM_006228795.1.
    UniGenei Rn.161837.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000032026 ; ENSRNOP00000030997 ; ENSRNOG00000024309 .
    ENSRNOT00000045155 ; ENSRNOP00000048723 ; ENSRNOG00000034161 .
    GeneIDi 688869.
    KEGGi rno:688869.
    UCSCi RGD:1584097. rat.

    Organism-specific databases

    RGDi 1584097. Cox6b1.
    1591649. LOC681754.

    Phylogenomic databases

    GeneTreei ENSGT00390000001191.
    KOi K02267.
    OMAi FKFVTGG.
    OrthoDBi EOG7WDN54.
    TreeFami TF105065.

    Miscellaneous databases

    NextBioi 737426.
    PROi D3ZD09.

    Family and domain databases

    Gene3Di 1.10.10.140. 1 hit.
    InterProi IPR003213. Cyt_c_oxidase_su6B.
    [Graphical view ]
    Pfami PF02297. COX6B. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000278. Cyt_c_oxidase_6B. 1 hit.
    SUPFAMi SSF47694. SSF47694. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.
    3. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZD09_RAT
    AccessioniPrimary (citable) accession number: D3ZD09
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3