D3ZCQ8 (D3ZCQ8_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Rfx8 Ensembl ENSRNOP00000043410

Gene names

Name:

Rfx8 Ensembl ENSRNOP00000043410 RGD 1560724

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000043410

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	597 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000043410

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3ZCQ8 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: 4BA7F02AAD5EF46B	FASTA	597	66,999
	10 20 30 40 50 60 MAEAVPASPA GGRGLHRGII QWLVDNFCIC EGFSVPRCLM YEIYVETCGQ SAQNQVNPAT 70 80 90 100 110 120 FGKLVRLVFP DLGTRRLGTR GSARYHYDGI YIKKSSFFYA HYCYLLGKKS CHSGDLVAFG 130 140 150 160 170 180 KSPDFNNVLQ QEETCESHSP IKTDPMGSPV SPFRRCPFWE QELANKYSCK LVVFLADEYC 190 200 210 220 230 240 NYCRDILQYV RNQELEKVGS LVSSAVKTQQ QNSVFLLGIP XVRQLFGCYD MQLYKGLEDT 250 260 270 280 290 300 LLPDFLEDVS IQYLKSVRLF SKRFKLWLLG ALEGFPAILQ ISKLKEVTGF VKRLRRKTYL 310 320 330 340 350 360 SNMAKTMKMV LKNSRRVGLL KSDLRAIIRE GTLDISKKVL EGDSGHEEEP ESHTEMKCLG 370 380 390 400 410 420 CLISLLETST DLAELLNCVS SNLQALVFQP SKSKEEFIKL AASFQLKWNF LLTAVSKAMT 430 440 450 460 470 480 LSHRDSFGAW HLFHLLLLEY VIHILESCME EEEEEEDLGS LQDLLSDDQF LTQPDQALFH 490 500 510 520 530 540 SLDSLPASEC ASRNVESPQV TLKHMSQSCS PMGVSSMVLQ VLGFLVDTAT GNKLIQVLLE 550 560 570 580 590 DKATESAVKL SLPVGQEALI TLSNGQRFVI HISDVPQSSE NTYCRKSDST MPGGLLE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000043410.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000043410.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06059967 Genomic DNA. No translation available. AABR06059968 Genomic DNA. No translation available. AABR06059969 Genomic DNA. No translation available.
IPI	IPI00557907.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000047654; ENSRNOP00000043410; ENSRNOG00000032910.
UCSC	RGD:1560724. rat.
Organism-specific databases
RGD	1560724. Rfx8.
Phylogenomic databases
GeneTree	ENSGT00550000074532.
OrthoDB	EOG42V8HP.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR003150. DNA-bd_RFX. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF02257. RFX_DNA_binding. 1 hit. [Graphical view]
PROSITE	PS51526. RFX_DBD. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35566507.

Entry information

Entry name

D3ZCQ8_RAT

Accession

Primary (citable) accession number: D3ZCQ8

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 3, 2013
Last modified:	May 1, 2013
This is version 24 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)