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D3ZCQ8

- D3ZCQ8_RAT

UniProt

D3ZCQ8 - D3ZCQ8_RAT

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Protein
Submitted name:

Protein Rfx8

Gene
Rfx8
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Rfx8Imported
Gene namesi
Name:Rfx8Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 9

Organism-specific databases

RGDi1560724. Rfx8.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00550000074532.
OMAiDNFCICE.
OrthoDBiEOG74BJRM.
TreeFamiTF342109.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR003150. DNA-bd_RFX.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02257. RFX_DNA_binding. 1 hit.
[Graphical view]
PROSITEiPS51526. RFX_DBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZCQ8-1 [UniParc]FASTAAdd to Basket

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MAEAVPASPA GGRGLHRGII QWLVDNFCIC EGFSVPRCLM YEIYVETCGQ    50
SAQNQVNPAT FGKLVRLVFP DLGTRRLGTR GSARYHYDGI YIKKSSFFYA 100
HYCYLLGKKS CHSGDLVAFG KSPDFNNVLQ QEETCESHSP IKTDPMGSPV 150
SPFRRCPFWE QELANKYSCK LVVFLADEYC NYCRDILQYV RNQELEKVGS 200
LVSSAVKTQQ QNSVFLLGIP XVRQLFGCYD MQLYKGLEDT LLPDFLEDVS 250
IQYLKSVRLF SKRFKLWLLG ALEGFPAILQ ISKLKEVTGF VKRLRRKTYL 300
SNMAKTMKMV LKNSRRVGLL KSDLRAIIRE GTLDISKKVL EGDSGHEEEP 350
ESHTEMKCLG CLISLLETST DLAELLNCVS SNLQALVFQP SKSKEEFIKL 400
AASFQLKWNF LLTAVSKAMT LSHRDSFGAW HLFHLLLLEY VIHILESCME 450
EEEEEEDLGS LQDLLSDDQF LTQPDQALFH SLDSLPASEC ASRNVESPQV 500
TLKHMSQSCS PMGVSSMVLQ VLGFLVDTAT GNKLIQVLLE DKATESAVKL 550
SLPVGQEALI TLSNGQRFVI HISDVPQSSE NTYCRKSDST MPGGLLE 597
Length:597
Mass (Da):66,999
Last modified:April 3, 2013 - v2
Checksum:i4BA7F02AAD5EF46B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06059967 Genomic DNA. No translation available.
AABR06059968 Genomic DNA. No translation available.
AABR06059969 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000047654; ENSRNOP00000043410; ENSRNOG00000032910.
UCSCiRGD:1560724. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06059967 Genomic DNA. No translation available.
AABR06059968 Genomic DNA. No translation available.
AABR06059969 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000047654 ; ENSRNOP00000043410 ; ENSRNOG00000032910 .
UCSCi RGD:1560724. rat.

Organism-specific databases

RGDi 1560724. Rfx8.

Phylogenomic databases

GeneTreei ENSGT00550000074532.
OMAi DNFCICE.
OrthoDBi EOG74BJRM.
TreeFami TF342109.

Miscellaneous databases

NextBioi 35566507.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR003150. DNA-bd_RFX.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF02257. RFX_DNA_binding. 1 hit.
[Graphical view ]
PROSITEi PS51526. RFX_DBD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZCQ8_RAT
AccessioniPrimary (citable) accession number: D3ZCQ8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 28 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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