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D3ZCQ8

- D3ZCQ8_RAT

UniProt

D3ZCQ8 - D3ZCQ8_RAT

Protein
Submitted name:

Protein Rfx8

Gene

Rfx8

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Rfx8Imported
    Gene namesi
    Name:Rfx8Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 9

    Organism-specific databases

    RGDi1560724. Rfx8.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00550000074532.
    OMAiDNFCICE.
    OrthoDBiEOG74BJRM.
    TreeFamiTF342109.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR003150. DNA-bd_RFX.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF02257. RFX_DNA_binding. 1 hit.
    [Graphical view]
    PROSITEiPS51526. RFX_DBD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZCQ8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAEAVPASPA GGRGLHRGII QWLVDNFCIC EGFSVPRCLM YEIYVETCGQ    50
    SAQNQVNPAT FGKLVRLVFP DLGTRRLGTR GSARYHYDGI YIKKSSFFYA 100
    HYCYLLGKKS CHSGDLVAFG KSPDFNNVLQ QEETCESHSP IKTDPMGSPV 150
    SPFRRCPFWE QELANKYSCK LVVFLADEYC NYCRDILQYV RNQELEKVGS 200
    LVSSAVKTQQ QNSVFLLGIP XVRQLFGCYD MQLYKGLEDT LLPDFLEDVS 250
    IQYLKSVRLF SKRFKLWLLG ALEGFPAILQ ISKLKEVTGF VKRLRRKTYL 300
    SNMAKTMKMV LKNSRRVGLL KSDLRAIIRE GTLDISKKVL EGDSGHEEEP 350
    ESHTEMKCLG CLISLLETST DLAELLNCVS SNLQALVFQP SKSKEEFIKL 400
    AASFQLKWNF LLTAVSKAMT LSHRDSFGAW HLFHLLLLEY VIHILESCME 450
    EEEEEEDLGS LQDLLSDDQF LTQPDQALFH SLDSLPASEC ASRNVESPQV 500
    TLKHMSQSCS PMGVSSMVLQ VLGFLVDTAT GNKLIQVLLE DKATESAVKL 550
    SLPVGQEALI TLSNGQRFVI HISDVPQSSE NTYCRKSDST MPGGLLE 597
    Length:597
    Mass (Da):66,999
    Last modified:April 3, 2013 - v2
    Checksum:i4BA7F02AAD5EF46B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06059967 Genomic DNA. No translation available.
    AABR06059968 Genomic DNA. No translation available.
    AABR06059969 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000047654; ENSRNOP00000043410; ENSRNOG00000032910.
    UCSCiRGD:1560724. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06059967 Genomic DNA. No translation available.
    AABR06059968 Genomic DNA. No translation available.
    AABR06059969 Genomic DNA. No translation available.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000047654 ; ENSRNOP00000043410 ; ENSRNOG00000032910 .
    UCSCi RGD:1560724. rat.

    Organism-specific databases

    RGDi 1560724. Rfx8.

    Phylogenomic databases

    GeneTreei ENSGT00550000074532.
    OMAi DNFCICE.
    OrthoDBi EOG74BJRM.
    TreeFami TF342109.

    Miscellaneous databases

    NextBioi 35566507.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR003150. DNA-bd_RFX.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF02257. RFX_DNA_binding. 1 hit.
    [Graphical view ]
    PROSITEi PS51526. RFX_DBD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZCQ8_RAT
    AccessioniPrimary (citable) accession number: D3ZCQ8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 29 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3