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D3ZCF7

- D3ZCF7_RAT

UniProt

D3ZCF7 - D3ZCF7_RAT

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Protein
Submitted name: Protein Lrp12
Gene
Lrp12
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Lrp12Imported
Gene namesi
Name:Lrp12Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 7

Organism-specific databases

RGDi1304943. Lrp12.

Subcellular locationi

GO - Cellular componenti

  1. integral component of plasma membrane Source: Ensembl
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotations

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00690000101841.
OMAiPTCGQWL.
OrthoDBiEOG7PCJG4.
PhylomeDBiD3ZCF7.
TreeFamiTF332149.

Family and domain databases

Gene3Di2.60.120.290. 2 hits.
4.10.400.10. 5 hits.
InterProiIPR000859. CUB_dom.
IPR023415. LDLR_class-A_CS.
IPR002172. LDrepeatLR_classA_rpt.
[Graphical view]
PfamiPF00431. CUB. 2 hits.
PF00057. Ldl_recept_a. 3 hits.
[Graphical view]
PRINTSiPR00261. LDLRECEPTOR.
SMARTiSM00042. CUB. 2 hits.
SM00192. LDLa. 5 hits.
[Graphical view]
SUPFAMiSSF49854. SSF49854. 2 hits.
SSF57424. SSF57424. 5 hits.
PROSITEiPS01180. CUB. 2 hits.
PS01209. LDLRA_1. 2 hits.
PS50068. LDLRA_2. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZCF7-1 [UniParc]FASTAAdd to Basket

« Hide

MARRWSTKES PRRGSAWLLL FLAGVYGNGA LAELSENVHI SGVSTACGET    50
PEQIRGPTGI ITSPGWPSDY PAKINCSWLI RANPGEIITI SFQDFDIQGS 100
RRCTLDWLTI ETYKNIESYR ACGSTIPPPY ISSQDHVWIR FHSDDSVSRK 150
GFRLAYFSGK SEEPHCACDQ FRCGNGKCIP EAWKCNSMDE CGDSSDEEVC 200
VQDAHPPTTT AFQPCAYNQF QCLSRFTKVY TCLPESLKCD GNIDCLDLGD 250
EIDCDMPTCG QWLKYFYGTF SSPNYPDFYP PGSNCTWLID TGDHRKVILR 300
FTDFKLDGTG YGDYVKIYDG LEENPRKLLR VLTAFDSHAP LTVVSSSGQI 350
RVHFCADKVN AARGFNATYQ VDGFCLPWEI PCGGNWGCYT EQQRCDGYWH 400
CPNGRDEINC TMCQKEEFPC SRNGVCYPRS DRCNYQNHCP NGSDEKNCFF 450
CQPGNFHCKN NRCVFESWVC DSQDDCGDGS DEESCPVIVP TRVITAAVIG 500
SLVCGLLLVI ALGCTCKLYS LRMFERRSFE TQLSRVEAEL LRREAPPSYG 550
QLIAQGLIPP VEDFPVCSPN QASVLENLRL AVRSQLGFPS IRLPMTGRSR 600
NIWNRIFNFA RSRHSGSLAL VSGDGDEVVP SQSSSRETER SHPHRSLFSA 650
ESDDTDTENE RRDTAGASGG VAAPLPQKVP PTTAVEATVG TGGNSSAQST 700
RGGHADGREV SSVEAPSVSP ARHQLTSALS RMTQGLRWVR FTLGRSSSTN 750
QNRSPLRQLD TGVSGREDDD DVEMLIPVSD GASDIDANEC SRPLLDLASD 800
QVQGFRQPHS SGNPGARTSN RDGPCERCGI VHTAQIPDTC LEAAVKTEAC 850
DDEALLLC 858
Length:858
Mass (Da):94,561
Last modified:April 20, 2010 - v1
Checksum:iB0B92A3DA5B572A1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06050546 Genomic DNA. No translation available.
RefSeqiNP_001128355.1. NM_001134883.1.
UniGeneiRn.17834.

Genome annotation databases

EnsembliENSRNOT00000005668; ENSRNOP00000005668; ENSRNOG00000004152.
GeneIDi314941.
KEGGirno:314941.
UCSCiRGD:1304943. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06050546 Genomic DNA. No translation available.
RefSeqi NP_001128355.1. NM_001134883.1.
UniGenei Rn.17834.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000005668 ; ENSRNOP00000005668 ; ENSRNOG00000004152 .
GeneIDi 314941.
KEGGi rno:314941.
UCSCi RGD:1304943. rat.

Organism-specific databases

CTDi 29967.
RGDi 1304943. Lrp12.

Phylogenomic databases

GeneTreei ENSGT00690000101841.
OMAi PTCGQWL.
OrthoDBi EOG7PCJG4.
PhylomeDBi D3ZCF7.
TreeFami TF332149.

Miscellaneous databases

NextBioi 668393.

Family and domain databases

Gene3Di 2.60.120.290. 2 hits.
4.10.400.10. 5 hits.
InterProi IPR000859. CUB_dom.
IPR023415. LDLR_class-A_CS.
IPR002172. LDrepeatLR_classA_rpt.
[Graphical view ]
Pfami PF00431. CUB. 2 hits.
PF00057. Ldl_recept_a. 3 hits.
[Graphical view ]
PRINTSi PR00261. LDLRECEPTOR.
SMARTi SM00042. CUB. 2 hits.
SM00192. LDLa. 5 hits.
[Graphical view ]
SUPFAMi SSF49854. SSF49854. 2 hits.
SSF57424. SSF57424. 5 hits.
PROSITEi PS01180. CUB. 2 hits.
PS01209. LDLRA_1. 2 hits.
PS50068. LDLRA_2. 5 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZCF7_RAT
AccessioniPrimary (citable) accession number: D3ZCF7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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