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D3ZCF7

- D3ZCF7_RAT

UniProt

D3ZCF7 - D3ZCF7_RAT

Protein
Submitted name:

Protein Lrp12

Gene

Lrp12

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Lrp12Imported
    Gene namesi
    Name:Lrp12Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 7

    Organism-specific databases

    RGDi1304943. Lrp12.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of plasma membrane Source: Ensembl

    PTM / Processingi

    Keywords - PTMi

    Disulfide bondSAAS annotation

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00690000101841.
    OMAiPTCGQWL.
    OrthoDBiEOG7PCJG4.
    PhylomeDBiD3ZCF7.
    TreeFamiTF332149.

    Family and domain databases

    Gene3Di2.60.120.290. 2 hits.
    4.10.400.10. 5 hits.
    InterProiIPR000859. CUB_dom.
    IPR023415. LDLR_class-A_CS.
    IPR002172. LDrepeatLR_classA_rpt.
    [Graphical view]
    PfamiPF00431. CUB. 2 hits.
    PF00057. Ldl_recept_a. 3 hits.
    [Graphical view]
    PRINTSiPR00261. LDLRECEPTOR.
    SMARTiSM00042. CUB. 2 hits.
    SM00192. LDLa. 5 hits.
    [Graphical view]
    SUPFAMiSSF49854. SSF49854. 2 hits.
    SSF57424. SSF57424. 5 hits.
    PROSITEiPS01180. CUB. 2 hits.
    PS01209. LDLRA_1. 2 hits.
    PS50068. LDLRA_2. 5 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZCF7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARRWSTKES PRRGSAWLLL FLAGVYGNGA LAELSENVHI SGVSTACGET    50
    PEQIRGPTGI ITSPGWPSDY PAKINCSWLI RANPGEIITI SFQDFDIQGS 100
    RRCTLDWLTI ETYKNIESYR ACGSTIPPPY ISSQDHVWIR FHSDDSVSRK 150
    GFRLAYFSGK SEEPHCACDQ FRCGNGKCIP EAWKCNSMDE CGDSSDEEVC 200
    VQDAHPPTTT AFQPCAYNQF QCLSRFTKVY TCLPESLKCD GNIDCLDLGD 250
    EIDCDMPTCG QWLKYFYGTF SSPNYPDFYP PGSNCTWLID TGDHRKVILR 300
    FTDFKLDGTG YGDYVKIYDG LEENPRKLLR VLTAFDSHAP LTVVSSSGQI 350
    RVHFCADKVN AARGFNATYQ VDGFCLPWEI PCGGNWGCYT EQQRCDGYWH 400
    CPNGRDEINC TMCQKEEFPC SRNGVCYPRS DRCNYQNHCP NGSDEKNCFF 450
    CQPGNFHCKN NRCVFESWVC DSQDDCGDGS DEESCPVIVP TRVITAAVIG 500
    SLVCGLLLVI ALGCTCKLYS LRMFERRSFE TQLSRVEAEL LRREAPPSYG 550
    QLIAQGLIPP VEDFPVCSPN QASVLENLRL AVRSQLGFPS IRLPMTGRSR 600
    NIWNRIFNFA RSRHSGSLAL VSGDGDEVVP SQSSSRETER SHPHRSLFSA 650
    ESDDTDTENE RRDTAGASGG VAAPLPQKVP PTTAVEATVG TGGNSSAQST 700
    RGGHADGREV SSVEAPSVSP ARHQLTSALS RMTQGLRWVR FTLGRSSSTN 750
    QNRSPLRQLD TGVSGREDDD DVEMLIPVSD GASDIDANEC SRPLLDLASD 800
    QVQGFRQPHS SGNPGARTSN RDGPCERCGI VHTAQIPDTC LEAAVKTEAC 850
    DDEALLLC 858
    Length:858
    Mass (Da):94,561
    Last modified:April 20, 2010 - v1
    Checksum:iB0B92A3DA5B572A1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06050546 Genomic DNA. No translation available.
    RefSeqiNP_001128355.1. NM_001134883.1.
    UniGeneiRn.17834.

    Genome annotation databases

    EnsembliENSRNOT00000005668; ENSRNOP00000005668; ENSRNOG00000004152.
    GeneIDi314941.
    KEGGirno:314941.
    UCSCiRGD:1304943. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06050546 Genomic DNA. No translation available.
    RefSeqi NP_001128355.1. NM_001134883.1.
    UniGenei Rn.17834.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000005668 ; ENSRNOP00000005668 ; ENSRNOG00000004152 .
    GeneIDi 314941.
    KEGGi rno:314941.
    UCSCi RGD:1304943. rat.

    Organism-specific databases

    CTDi 29967.
    RGDi 1304943. Lrp12.

    Phylogenomic databases

    GeneTreei ENSGT00690000101841.
    OMAi PTCGQWL.
    OrthoDBi EOG7PCJG4.
    PhylomeDBi D3ZCF7.
    TreeFami TF332149.

    Miscellaneous databases

    NextBioi 668393.

    Family and domain databases

    Gene3Di 2.60.120.290. 2 hits.
    4.10.400.10. 5 hits.
    InterProi IPR000859. CUB_dom.
    IPR023415. LDLR_class-A_CS.
    IPR002172. LDrepeatLR_classA_rpt.
    [Graphical view ]
    Pfami PF00431. CUB. 2 hits.
    PF00057. Ldl_recept_a. 3 hits.
    [Graphical view ]
    PRINTSi PR00261. LDLRECEPTOR.
    SMARTi SM00042. CUB. 2 hits.
    SM00192. LDLa. 5 hits.
    [Graphical view ]
    SUPFAMi SSF49854. SSF49854. 2 hits.
    SSF57424. SSF57424. 5 hits.
    PROSITEi PS01180. CUB. 2 hits.
    PS01209. LDLRA_1. 2 hits.
    PS50068. LDLRA_2. 5 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZCF7_RAT
    AccessioniPrimary (citable) accession number: D3ZCF7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3