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D3ZCF7 (D3ZCF7_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length858 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000005668

Sequences

Sequence LengthMass (Da)Tools
D3ZCF7 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: B0B92A3DA5B572A1

FASTA85894,561
        10         20         30         40         50         60 
MARRWSTKES PRRGSAWLLL FLAGVYGNGA LAELSENVHI SGVSTACGET PEQIRGPTGI 

        70         80         90        100        110        120 
ITSPGWPSDY PAKINCSWLI RANPGEIITI SFQDFDIQGS RRCTLDWLTI ETYKNIESYR 

       130        140        150        160        170        180 
ACGSTIPPPY ISSQDHVWIR FHSDDSVSRK GFRLAYFSGK SEEPHCACDQ FRCGNGKCIP 

       190        200        210        220        230        240 
EAWKCNSMDE CGDSSDEEVC VQDAHPPTTT AFQPCAYNQF QCLSRFTKVY TCLPESLKCD 

       250        260        270        280        290        300 
GNIDCLDLGD EIDCDMPTCG QWLKYFYGTF SSPNYPDFYP PGSNCTWLID TGDHRKVILR 

       310        320        330        340        350        360 
FTDFKLDGTG YGDYVKIYDG LEENPRKLLR VLTAFDSHAP LTVVSSSGQI RVHFCADKVN 

       370        380        390        400        410        420 
AARGFNATYQ VDGFCLPWEI PCGGNWGCYT EQQRCDGYWH CPNGRDEINC TMCQKEEFPC 

       430        440        450        460        470        480 
SRNGVCYPRS DRCNYQNHCP NGSDEKNCFF CQPGNFHCKN NRCVFESWVC DSQDDCGDGS 

       490        500        510        520        530        540 
DEESCPVIVP TRVITAAVIG SLVCGLLLVI ALGCTCKLYS LRMFERRSFE TQLSRVEAEL 

       550        560        570        580        590        600 
LRREAPPSYG QLIAQGLIPP VEDFPVCSPN QASVLENLRL AVRSQLGFPS IRLPMTGRSR 

       610        620        630        640        650        660 
NIWNRIFNFA RSRHSGSLAL VSGDGDEVVP SQSSSRETER SHPHRSLFSA ESDDTDTENE 

       670        680        690        700        710        720 
RRDTAGASGG VAAPLPQKVP PTTAVEATVG TGGNSSAQST RGGHADGREV SSVEAPSVSP 

       730        740        750        760        770        780 
ARHQLTSALS RMTQGLRWVR FTLGRSSSTN QNRSPLRQLD TGVSGREDDD DVEMLIPVSD 

       790        800        810        820        830        840 
GASDIDANEC SRPLLDLASD QVQGFRQPHS SGNPGARTSN RDGPCERCGI VHTAQIPDTC 

       850 
LEAAVKTEAC DDEALLLC 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000005668.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000005668.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06050546 Genomic DNA. No translation available.
RefSeqNP_001128355.1. NM_001134883.1.
UniGeneRn.17834.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000005668; ENSRNOP00000005668; ENSRNOG00000004152.
GeneID314941.
KEGGrno:314941.
UCSCRGD:1304943. rat.

Organism-specific databases

CTD29967.
RGD1304943. Lrp12.

Phylogenomic databases

GeneTreeENSGT00690000101841.
OMAPTCGQWL.
OrthoDBEOG7PCJG4.
PhylomeDBD3ZCF7.
TreeFamTF332149.

Family and domain databases

Gene3D2.60.120.290. 2 hits.
4.10.400.10. 5 hits.
InterProIPR000859. CUB_dom.
IPR023415. LDLR_class-A_CS.
IPR002172. LDrepeatLR_classA_rpt.
[Graphical view]
PfamPF00431. CUB. 2 hits.
PF00057. Ldl_recept_a. 3 hits.
[Graphical view]
PRINTSPR00261. LDLRECEPTOR.
SMARTSM00042. CUB. 2 hits.
SM00192. LDLa. 5 hits.
[Graphical view]
SUPFAMSSF49854. SSF49854. 2 hits.
SSF57424. SSF57424. 5 hits.
PROSITEPS01180. CUB. 2 hits.
PS01209. LDLRA_1. 2 hits.
PS50068. LDLRA_2. 5 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio668393.

Entry information

Entry nameD3ZCF7_RAT
AccessionPrimary (citable) accession number: D3ZCF7
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)