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D3ZC02 (D3ZC02_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein Zbtb39 Ensembl ENSRNOP00000005685
Submitted name:
Zinc finger and BTB domain containing 39 (Predicted) EMBL EDM16451.1
Gene names
Name:Zbtb39 RGD 1306532 Ensembl ENSRNOP00000005685
Synonyms:Zbtb39_predicted EMBL EDM16451.1
ORF Names:rCG_59366 EMBL EDM16451.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000005685
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length711 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 BTB (POZ) domain. SAAS SAAS013069 RuleBase RU004401

Ontologies

Keywords
   Cellular componentNucleus SAAS SAAS013069
   DomainRepeat SAAS SAAS013069
Zinc-finger SAAS SAAS013069
   LigandMetal-binding
Zinc
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionnucleic acid binding

Inferred from electronic annotation. Source: InterPro

zinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3ZC02 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 328EFD3B1EFAA7BB

FASTA71178,901
        10         20         30         40         50         60 
MGMRIKLQSS NHPNNLLKEL NKCRLSETMC DVTIVVGSRS FPAHKAVLAC AAGYFQNLFL 

        70         80         90        100        110        120 
NTGLDAARTY VVDFITPANF EKILSFVYTS ELFTDLINVG VIYEVAERLG MEDLLRACHS 

       130        140        150        160        170        180 
TFPDLESTTI AKSLTSTSDS PCVTLSCPSV DPTHPLGELR GSGEHFGPDR NYALPTDAGG 

       190        200        210        220        230        240 
SYKEEERAIA GDTNHSLPLP QVPLPPKSED HDAPVPFTSV PSMVTPPPVL GTVSTGIQTS 

       250        260        270        280        290        300 
TTSSCQPYKV QSNGDFGKSN FFTSDNALDI TPQTNPCLSN NDQARDPGFG QMDELQLEDL 

       310        320        330        340        350        360 
GDEDLQFEDP AEDLGTTEEV IELSDDSEDD LAFGDNRENK AMPCQVCKKV LEPNIQLIRQ 

       370        380        390        400        410        420 
HARDHVDLLT GNCKVCETHF QDRNSRVTHV LSHIGIFLFS CDMCETKFFT QWQLTLHRRD 

       430        440        450        460        470        480 
GIFENNVIVH PNEPLSGKLG LFPGAASPEL KCAACGKALA KDFHVVRGHI LEHVSLKGQA 

       490        500        510        520        530        540 
CSVCDQRHLN LCSLMWHTLS HLGISVFSCS VCASSFVDWH LLEKHMAVHQ SLEDVLFRCH 

       550        560        570        580        590        600 
LCSQSFRSEA AYRYHVSQHK CSSGLDPRPA VGLPHLALQK RKLPAEDFLS EELALQGQPG 

       610        620        630        640        650        660 
NSKYSCKVCG KRFAHTSEFN YHRRIHTGEK PYQCKVCHKF FRGRSTIKCH LKTHSGALMY 

       670        680        690        700        710 
RCTVCGHYSS TLNLMSKHVG VHKGSLPPDF TIEQTFMYII HSKEAEKNPD S

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000005685.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM16451.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM16451.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000005685.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06050252 Genomic DNA. No translation available.
CH473950 Genomic DNA. Translation: EDM16451.1.
IPIIPI00206991.
RefSeqNP_001124009.1. NM_001130537.1.
UniGeneRn.62592.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000005685; ENSRNOP00000005685; ENSRNOG00000004306.
GeneID299510.
KEGGrno:299510.
UCSCRGD:1306532. rat.

Organism-specific databases

CTD9880.
RGD1306532. Zbtb39.

Phylogenomic databases

GeneTreeENSGT00530000063338.
KOK10511.
OMAFRGRSTI.
OrthoDBEOG4V9TQ2.

Family and domain databases

Gene3D3.30.160.60. 2 hits.
3.30.710.10. 1 hit.
InterProIPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamPF00651. BTB. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTSM00225. BTB. 1 hit.
SM00355. ZnF_C2H2. 9 hits.
[Graphical view]
SUPFAMSSF54695. BTB/POZ_fold. 1 hit.
PROSITEPS50097. BTB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 5 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio645349.

Entry information

Entry nameD3ZC02_RAT
AccessionPrimary (citable) accession number: D3ZC02
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info