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Protein
Submitted name:

Calcium homeostasis endoplasmic reticulum protein (Predicted)

Gene

Cherp

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Calcium homeostasis endoplasmic reticulum protein (Predicted)Imported
Submitted name:
Protein CherpImported
Gene namesi
Name:CherpImported
Synonyms:Cherp_predictedImported
ORF Names:rCG_38856Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 16

Organism-specific databases

RGDi1305279. Cherp.

Subcellular locationi

GO - Cellular componenti

  • perinuclear region of cytoplasm Source: Ensembl
  • sarcoplasmic reticulum membrane Source: UniProtKB
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliD3ZAX5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains G-patch domain.SAAS annotation

Phylogenomic databases

GeneTreeiENSGT00730000111147.
KOiK12841.
OMAiAEMGPPH.
OrthoDBiEOG7H1JK4.
TreeFamiTF318512.

Family and domain databases

Gene3Di1.25.40.90. 1 hit.
InterProiIPR006569. CID_dom.
IPR008942. ENTH_VHS.
IPR000467. G_patch_dom.
IPR006903. RNA_pol_II-bd.
IPR000061. Surp.
[Graphical view]
PfamiPF04818. CTD_bind. 1 hit.
PF01585. G-patch. 1 hit.
PF01805. Surp. 1 hit.
[Graphical view]
SMARTiSM00443. G_patch. 1 hit.
SM00582. RPR. 1 hit.
SM00648. SWAP. 1 hit.
[Graphical view]
SUPFAMiSSF109905. SSF109905. 1 hit.
SSF48464. SSF48464. 1 hit.
PROSITEiPS51391. CID. 1 hit.
PS50174. G_PATCH. 1 hit.
PS50128. SURP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZAX5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEMPLPPDDQ ELRNVIDKLA QFVARNGPEF EKMTMEKQKD NPKFSFLFGG
60 70 80 90 100
EFYSYYKCKL ALEQQQLICK QQAPELEPTS AMPPLPQPPL APTASLTPAQ
110 120 130 140 150
GTPSMDELIQ QSQWSLQQQE QHLLALRQEQ VTTAVAHAVE QQMQKLLEET
160 170 180 190 200
QLDMSEFDNL LQPIIDTCTK DAISAGKNWM FSNAKSPPHC ELMAGHLRNR
210 220 230 240 250
ITADGAHFEL RLHLIYLIND VLHHCQRKQA RELLAALQKV VVPIYCTSFL
260 270 280 290 300
AVEEDKQQKI ARLLQLWEKN GYFDDSIIQQ LQSPALGLGQ YQATLINEYS
310 320 330 340 350
SVVQPVQLAF QQQIQSLKTQ HEEFVSSLAQ QQQQQQQQQQ PPQQPPQPQI
360 370 380 390 400
QLPPMEADVK ATPPPSAPPP ASAPAPTIPP TTQPDDNKPP IQMPGSSEYD
410 420 430 440 450
TSAGVQDPAA AGPRGPGPHE QIPPNKPPWF DQPHPVAPWG QQQPPEQPPY
460 470 480 490 500
PHHQGGPPHC PPWNNSHEGM WGEQRGDPGW NGQRDAPWNN QPDPNWNNQF
510 520 530 540 550
EGPWNNQHEP PPWGGAQREP PFRMQRPPHF RGPFPPHQQH PQFNQPPHPH
560 570 580 590 600
NFNRFPPRFM QDDFPPRHPF ERPPYPHRFD YPQGDFPADM GPPHHHPGHR
610 620 630 640 650
MPHPGINEHP PWAGPQHPDF GPPPHGFNGQ PPHMRRQGPP HINHDDPSLV
660 670 680 690 700
PNVPYFDLPA GLMAPLVKLE DHEYKPLDPK DIRLPPPMPP SERLLAAVEA
710 720 730 740 750
FYSPPSHDRP RNSEGWEQNG LYEFFRAKMR ARRRKGQEKR NSGPSRSHSR
760 770 780 790 800
SKSRGRSSSR SSSRSSKSSR SSSRSRSRSR SRSSSRSRSR SRSRSRSSRS
810 820 830 840 850
RSRSRSRSRS KSYSPGRRRR SRSRSPTPPS AAGLGSNSAP PIPDSRLGEE
860 870 880 890 900
NKGHQMLVKM GWSGSGGLGA KEQGIQDPIK GGDVRDKWDQ YKGVGVALDD
910 920 930
PYENYRRNKS YSFIARMKAR DEFSTFGARK EEKED
Length:935
Mass (Da):105,920
Last modified:April 3, 2013 - v2
Checksum:i79DAE80A0D018C5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06086810 Genomic DNA. No translation available.
CH474031 Genomic DNA. Translation: EDL90845.1.
RefSeqiNP_001099534.1. NM_001106064.1.
UniGeneiRn.85949.

Genome annotation databases

EnsembliENSRNOT00000017424; ENSRNOP00000017424; ENSRNOG00000012323.
GeneIDi290614.
KEGGirno:290614.
UCSCiRGD:1305279. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06086810 Genomic DNA. No translation available.
CH474031 Genomic DNA. Translation: EDL90845.1.
RefSeqiNP_001099534.1. NM_001106064.1.
UniGeneiRn.85949.

3D structure databases

ProteinModelPortaliD3ZAX5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000017424; ENSRNOP00000017424; ENSRNOG00000012323.
GeneIDi290614.
KEGGirno:290614.
UCSCiRGD:1305279. rat.

Organism-specific databases

CTDi10523.
RGDi1305279. Cherp.

Phylogenomic databases

GeneTreeiENSGT00730000111147.
KOiK12841.
OMAiAEMGPPH.
OrthoDBiEOG7H1JK4.
TreeFamiTF318512.

Miscellaneous databases

NextBioi35566090.

Family and domain databases

Gene3Di1.25.40.90. 1 hit.
InterProiIPR006569. CID_dom.
IPR008942. ENTH_VHS.
IPR000467. G_patch_dom.
IPR006903. RNA_pol_II-bd.
IPR000061. Surp.
[Graphical view]
PfamiPF04818. CTD_bind. 1 hit.
PF01585. G-patch. 1 hit.
PF01805. Surp. 1 hit.
[Graphical view]
SMARTiSM00443. G_patch. 1 hit.
SM00582. RPR. 1 hit.
SM00648. SWAP. 1 hit.
[Graphical view]
SUPFAMiSSF109905. SSF109905. 1 hit.
SSF48464. SSF48464. 1 hit.
PROSITEiPS51391. CID. 1 hit.
PS50174. G_PATCH. 1 hit.
PS50128. SURP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.
  5. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiD3ZAX5_RAT
AccessioniPrimary (citable) accession number: D3ZAX5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: May 27, 2015
This is version 43 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.