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D3ZAX5 (D3ZAX5_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Protein Cherp Ensembl ENSRNOP00000017424
Gene names
Name:Cherp Ensembl ENSRNOP00000017424 RGD 1305279
Synonyms:Cherp_predicted EMBL EDL90845.1
ORF Names:rCG_38856 EMBL EDL90845.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000017424
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length935 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D3ZAX5 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 79DAE80A0D018C5A

FASTA935105,920
        10         20         30         40         50         60 
MEMPLPPDDQ ELRNVIDKLA QFVARNGPEF EKMTMEKQKD NPKFSFLFGG EFYSYYKCKL 

        70         80         90        100        110        120 
ALEQQQLICK QQAPELEPTS AMPPLPQPPL APTASLTPAQ GTPSMDELIQ QSQWSLQQQE 

       130        140        150        160        170        180 
QHLLALRQEQ VTTAVAHAVE QQMQKLLEET QLDMSEFDNL LQPIIDTCTK DAISAGKNWM 

       190        200        210        220        230        240 
FSNAKSPPHC ELMAGHLRNR ITADGAHFEL RLHLIYLIND VLHHCQRKQA RELLAALQKV 

       250        260        270        280        290        300 
VVPIYCTSFL AVEEDKQQKI ARLLQLWEKN GYFDDSIIQQ LQSPALGLGQ YQATLINEYS 

       310        320        330        340        350        360 
SVVQPVQLAF QQQIQSLKTQ HEEFVSSLAQ QQQQQQQQQQ PPQQPPQPQI QLPPMEADVK 

       370        380        390        400        410        420 
ATPPPSAPPP ASAPAPTIPP TTQPDDNKPP IQMPGSSEYD TSAGVQDPAA AGPRGPGPHE 

       430        440        450        460        470        480 
QIPPNKPPWF DQPHPVAPWG QQQPPEQPPY PHHQGGPPHC PPWNNSHEGM WGEQRGDPGW 

       490        500        510        520        530        540 
NGQRDAPWNN QPDPNWNNQF EGPWNNQHEP PPWGGAQREP PFRMQRPPHF RGPFPPHQQH 

       550        560        570        580        590        600 
PQFNQPPHPH NFNRFPPRFM QDDFPPRHPF ERPPYPHRFD YPQGDFPADM GPPHHHPGHR 

       610        620        630        640        650        660 
MPHPGINEHP PWAGPQHPDF GPPPHGFNGQ PPHMRRQGPP HINHDDPSLV PNVPYFDLPA 

       670        680        690        700        710        720 
GLMAPLVKLE DHEYKPLDPK DIRLPPPMPP SERLLAAVEA FYSPPSHDRP RNSEGWEQNG 

       730        740        750        760        770        780 
LYEFFRAKMR ARRRKGQEKR NSGPSRSHSR SKSRGRSSSR SSSRSSKSSR SSSRSRSRSR 

       790        800        810        820        830        840 
SRSSSRSRSR SRSRSRSSRS RSRSRSRSRS KSYSPGRRRR SRSRSPTPPS AAGLGSNSAP 

       850        860        870        880        890        900 
PIPDSRLGEE NKGHQMLVKM GWSGSGGLGA KEQGIQDPIK GGDVRDKWDQ YKGVGVALDD 

       910        920        930 
PYENYRRNKS YSFIARMKAR DEFSTFGARK EEKED 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000017424.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL90845.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL90845.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000017424.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06086810 Genomic DNA. No translation available.
CH474031 Genomic DNA. Translation: EDL90845.1.
RefSeqNP_001099534.1. NM_001106064.1.
UniGeneRn.85949.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000017424; ENSRNOP00000017424; ENSRNOG00000012323.
GeneID290614.
KEGGrno:290614.
UCSCRGD:1305279. rat.

Organism-specific databases

CTD10523.
RGD1305279. Cherp.

Phylogenomic databases

GeneTreeENSGT00730000111147.
KOK12841.
OMAAEMGPPH.
OrthoDBEOG7H1JK4.
TreeFamTF318512.

Family and domain databases

Gene3D1.25.40.90. 1 hit.
InterProIPR006569. CID_dom.
IPR008942. ENTH_VHS.
IPR000467. G_patch_dom.
IPR006903. RNA_pol_II-bd.
IPR000061. Surp.
[Graphical view]
PfamPF04818. CTD_bind. 1 hit.
PF01585. G-patch. 1 hit.
PF01805. Surp. 1 hit.
[Graphical view]
SMARTSM00443. G_patch. 1 hit.
SM00582. RPR. 1 hit.
SM00648. SWAP. 1 hit.
[Graphical view]
SUPFAMSSF109905. SSF109905. 1 hit.
SSF48464. SSF48464. 1 hit.
PROSITEPS51391. CID. 1 hit.
PS50174. G_PATCH. 1 hit.
PS50128. SURP. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35566090.

Entry information

Entry nameD3ZAX5_RAT
AccessionPrimary (citable) accession number: D3ZAX5
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 32 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)