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D3ZAS8 (D3ZAS8_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Squamous cell carcinoma antigen recognized by T-cells 3 (Predicted) EMBL EDM13966.1
Gene names
Name:Sart3 Ensembl ENSRNOP00000000891 RGD 1311646
Synonyms:Sart3_predicted EMBL EDM13966.1
ORF Names:rCG_21169 EMBL EDM13966.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000000891
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length960 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D3ZAS8 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 1D6E9BC6B4009B7D

FASTA960109,424
        10         20         30         40         50         60 
MATATASSAS EPEVEPQARP EAEGEEDEAK PAGVGRKVLS SAETAKAKGP EREVHQEGVS 

        70         80         90        100        110        120 
ESDGDEEDAA MASSAESSAG EDEWEYDEEE EKNQLEIERL EEQLSINGYD YNCHVGLIRL 

       130        140        150        160        170        180 
LRLEGELNKV RMARQKMSEI FPLTEELWLE WLHDEISMAV DGLDRERVYE LFERAVKDYI 

       190        200        210        220        230        240 
CPNIWLEYGQ YSVGGIGQKG GLEKVRSVFE RALSSVGLHM TKGLAIWEAY REFESAIVEA 

       250        260        270        280        290        300 
ARLERVHSLF RRQLAIPLYE MEATFAEYEE WSEEPIPESV LQSYQKALGQ LEKYKPYEEA 

       310        320        330        340        350        360 
LLQAEAPRLA EYQAYIDFEM KVGDPARIQL IFERALVENC LVPDLWIRYS QYLDRQLKVK 

       370        380        390        400        410        420 
DLVLSVHSRA VRNCPWTVAL WSRYLLAMER HGLDHQMISA TFENALSAGF IQATDYVEIW 

       430        440        450        460        470        480 
QVYLDYLRRR VDFRQDSSKE LEELRSMFTR ALEYLQQEVE ERFSESGDPS CLIMQSWARV 

       490        500        510        520        530        540 
EARLCNNMQK ARELWDSIMT RGNAKYANMW LEYYNLERAH GDTQHCRKAL HRAVQCTSDY 

       550        560        570        580        590        600 
PEHVCEVLLT MERTEGTLED WDLAIQKTET RLARVNEQRM KAAEKEAALV QQEEEKAEQR 

       610        620        630        640        650        660 
KKVRAEKKAL KKKKTRGADK RKAGEDDDER ECGEEEEEQP SKRRRMENSL ASGVASAKEE 

       670        680        690        700        710        720 
ETKLSGKCLT IDVAPPSKQK EKAASLKRDM PKVAHDSSKD SVTVFVSNLP YSIEEPEVKL 

       730        740        750        760        770        780 
RPLFEACGEV VQIRPIFSNR GDFRGYCYVE FKEEKSAQQA LDLDRKNVEG RPMFVSPCVD 

       790        800        810        820        830        840 
KSKNPDFKMF RYSTTLEKHK LFISGLPFSC TKEELEGICK AHGTVKDLRL VTNRAGKPKG 

       850        860        870        880        890        900 
LAYVEYENES QASQAVLKMD GMTIKENVIK VAISNPPQRK VPEKPEVRTA PGAPMVPRQM 

       910        920        930        940        950        960 
YGARGKGRTQ LSLLPRALQR QGAAPQAENG PAPGLAATTS VATEAPKMSN ADFAKLLLRK 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000000891.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM13966.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM13966.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000000891.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06072530 Genomic DNA. No translation available.
AABR06072531 Genomic DNA. No translation available.
CH473973 Genomic DNA. Translation: EDM13966.1.
RefSeqNP_001100626.1. NM_001107156.1.
UniGeneRn.101480.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000000891; ENSRNOP00000000891; ENSRNOG00000000702.
GeneID304582.
KEGGrno:304582.
UCSCRGD:1311646. rat.

Organism-specific databases

CTD9733.
RGD1311646. Sart3.

Phylogenomic databases

GeneTreeENSGT00730000111098.
OMATISHIKL.
OrthoDBEOG72ZCDB.
TreeFamTF317554.

Family and domain databases

Gene3D3.30.70.330. 2 hits.
InterProIPR003107. HAT.
IPR008669. LSM_interact.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamPF05391. Lsm_interact. 1 hit.
PF00076. RRM_1. 2 hits.
[Graphical view]
SMARTSM00386. HAT. 7 hits.
SM00360. RRM. 2 hits.
[Graphical view]
PROSITEPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio653335.
PROD3ZAS8.

Entry information

Entry nameD3ZAS8_RAT
AccessionPrimary (citable) accession number: D3ZAS8
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 19, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)