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D3ZAS8

- D3ZAS8_RAT

UniProt

D3ZAS8 - D3ZAS8_RAT

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Protein
Submitted name:

Protein Sart3

Gene
Sart3, Sart3_predicted, rCG_21169
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. nucleotide binding Source: InterPro

GO - Biological processi

  1. RNA processing Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Sart3Imported
Submitted name:
Squamous cell carcinoma antigen recognized by T-cells 3 (Predicted)Imported
Gene namesi
Name:Sart3Imported
Synonyms:Sart3_predictedImported
ORF Names:rCG_21169Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 12

Organism-specific databases

RGDi1311646. Sart3.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. intracellular membrane-bounded organelle Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000111098.
OMAiTISHIKL.
OrthoDBiEOG72ZCDB.
TreeFamiTF317554.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR003107. HAT.
IPR008669. LSM_interact.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF05391. Lsm_interact. 1 hit.
PF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00386. HAT. 7 hits.
SM00360. RRM. 2 hits.
[Graphical view]
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZAS8-1 [UniParc]FASTAAdd to Basket

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MATATASSAS EPEVEPQARP EAEGEEDEAK PAGVGRKVLS SAETAKAKGP    50
EREVHQEGVS ESDGDEEDAA MASSAESSAG EDEWEYDEEE EKNQLEIERL 100
EEQLSINGYD YNCHVGLIRL LRLEGELNKV RMARQKMSEI FPLTEELWLE 150
WLHDEISMAV DGLDRERVYE LFERAVKDYI CPNIWLEYGQ YSVGGIGQKG 200
GLEKVRSVFE RALSSVGLHM TKGLAIWEAY REFESAIVEA ARLERVHSLF 250
RRQLAIPLYE MEATFAEYEE WSEEPIPESV LQSYQKALGQ LEKYKPYEEA 300
LLQAEAPRLA EYQAYIDFEM KVGDPARIQL IFERALVENC LVPDLWIRYS 350
QYLDRQLKVK DLVLSVHSRA VRNCPWTVAL WSRYLLAMER HGLDHQMISA 400
TFENALSAGF IQATDYVEIW QVYLDYLRRR VDFRQDSSKE LEELRSMFTR 450
ALEYLQQEVE ERFSESGDPS CLIMQSWARV EARLCNNMQK ARELWDSIMT 500
RGNAKYANMW LEYYNLERAH GDTQHCRKAL HRAVQCTSDY PEHVCEVLLT 550
MERTEGTLED WDLAIQKTET RLARVNEQRM KAAEKEAALV QQEEEKAEQR 600
KKVRAEKKAL KKKKTRGADK RKAGEDDDER ECGEEEEEQP SKRRRMENSL 650
ASGVASAKEE ETKLSGKCLT IDVAPPSKQK EKAASLKRDM PKVAHDSSKD 700
SVTVFVSNLP YSIEEPEVKL RPLFEACGEV VQIRPIFSNR GDFRGYCYVE 750
FKEEKSAQQA LDLDRKNVEG RPMFVSPCVD KSKNPDFKMF RYSTTLEKHK 800
LFISGLPFSC TKEELEGICK AHGTVKDLRL VTNRAGKPKG LAYVEYENES 850
QASQAVLKMD GMTIKENVIK VAISNPPQRK VPEKPEVRTA PGAPMVPRQM 900
YGARGKGRTQ LSLLPRALQR QGAAPQAENG PAPGLAATTS VATEAPKMSN 950
ADFAKLLLRK 960
Length:960
Mass (Da):109,424
Last modified:April 20, 2010 - v1
Checksum:i1D6E9BC6B4009B7D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06072530 Genomic DNA. No translation available.
AABR06072531 Genomic DNA. No translation available.
CH473973 Genomic DNA. Translation: EDM13966.1.
RefSeqiNP_001100626.1. NM_001107156.1.
UniGeneiRn.101480.

Genome annotation databases

EnsembliENSRNOT00000000891; ENSRNOP00000000891; ENSRNOG00000000702.
GeneIDi304582.
KEGGirno:304582.
UCSCiRGD:1311646. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06072530 Genomic DNA. No translation available.
AABR06072531 Genomic DNA. No translation available.
CH473973 Genomic DNA. Translation: EDM13966.1 .
RefSeqi NP_001100626.1. NM_001107156.1.
UniGenei Rn.101480.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000000891 ; ENSRNOP00000000891 ; ENSRNOG00000000702 .
GeneIDi 304582.
KEGGi rno:304582.
UCSCi RGD:1311646. rat.

Organism-specific databases

CTDi 9733.
RGDi 1311646. Sart3.

Phylogenomic databases

GeneTreei ENSGT00730000111098.
OMAi TISHIKL.
OrthoDBi EOG72ZCDB.
TreeFami TF317554.

Miscellaneous databases

NextBioi 653335.
PROi D3ZAS8.

Family and domain databases

Gene3Di 3.30.70.330. 2 hits.
InterProi IPR003107. HAT.
IPR008669. LSM_interact.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view ]
Pfami PF05391. Lsm_interact. 1 hit.
PF00076. RRM_1. 2 hits.
[Graphical view ]
SMARTi SM00386. HAT. 7 hits.
SM00360. RRM. 2 hits.
[Graphical view ]
PROSITEi PS50102. RRM. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZAS8_RAT
AccessioniPrimary (citable) accession number: D3ZAS8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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