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D3ZAS8

- D3ZAS8_RAT

UniProt

D3ZAS8 - D3ZAS8_RAT

Protein
Submitted name:

Protein Sart3

Gene

Sart3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro

    GO - Biological processi

    1. RNA processing Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Sart3Imported
    Submitted name:
    Squamous cell carcinoma antigen recognized by T-cells 3 (Predicted)Imported
    Gene namesi
    Name:Sart3Imported
    Synonyms:Sart3_predictedImported
    ORF Names:rCG_21169Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 12

    Organism-specific databases

    RGDi1311646. Sart3.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. intracellular membrane-bounded organelle Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00730000111098.
    OMAiTISHIKL.
    OrthoDBiEOG72ZCDB.
    TreeFamiTF317554.

    Family and domain databases

    Gene3Di3.30.70.330. 2 hits.
    InterProiIPR003107. HAT.
    IPR008669. LSM_interact.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF05391. Lsm_interact. 1 hit.
    PF00076. RRM_1. 2 hits.
    [Graphical view]
    SMARTiSM00386. HAT. 7 hits.
    SM00360. RRM. 2 hits.
    [Graphical view]
    PROSITEiPS50102. RRM. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ZAS8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATATASSAS EPEVEPQARP EAEGEEDEAK PAGVGRKVLS SAETAKAKGP    50
    EREVHQEGVS ESDGDEEDAA MASSAESSAG EDEWEYDEEE EKNQLEIERL 100
    EEQLSINGYD YNCHVGLIRL LRLEGELNKV RMARQKMSEI FPLTEELWLE 150
    WLHDEISMAV DGLDRERVYE LFERAVKDYI CPNIWLEYGQ YSVGGIGQKG 200
    GLEKVRSVFE RALSSVGLHM TKGLAIWEAY REFESAIVEA ARLERVHSLF 250
    RRQLAIPLYE MEATFAEYEE WSEEPIPESV LQSYQKALGQ LEKYKPYEEA 300
    LLQAEAPRLA EYQAYIDFEM KVGDPARIQL IFERALVENC LVPDLWIRYS 350
    QYLDRQLKVK DLVLSVHSRA VRNCPWTVAL WSRYLLAMER HGLDHQMISA 400
    TFENALSAGF IQATDYVEIW QVYLDYLRRR VDFRQDSSKE LEELRSMFTR 450
    ALEYLQQEVE ERFSESGDPS CLIMQSWARV EARLCNNMQK ARELWDSIMT 500
    RGNAKYANMW LEYYNLERAH GDTQHCRKAL HRAVQCTSDY PEHVCEVLLT 550
    MERTEGTLED WDLAIQKTET RLARVNEQRM KAAEKEAALV QQEEEKAEQR 600
    KKVRAEKKAL KKKKTRGADK RKAGEDDDER ECGEEEEEQP SKRRRMENSL 650
    ASGVASAKEE ETKLSGKCLT IDVAPPSKQK EKAASLKRDM PKVAHDSSKD 700
    SVTVFVSNLP YSIEEPEVKL RPLFEACGEV VQIRPIFSNR GDFRGYCYVE 750
    FKEEKSAQQA LDLDRKNVEG RPMFVSPCVD KSKNPDFKMF RYSTTLEKHK 800
    LFISGLPFSC TKEELEGICK AHGTVKDLRL VTNRAGKPKG LAYVEYENES 850
    QASQAVLKMD GMTIKENVIK VAISNPPQRK VPEKPEVRTA PGAPMVPRQM 900
    YGARGKGRTQ LSLLPRALQR QGAAPQAENG PAPGLAATTS VATEAPKMSN 950
    ADFAKLLLRK 960
    Length:960
    Mass (Da):109,424
    Last modified:April 20, 2010 - v1
    Checksum:i1D6E9BC6B4009B7D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06072530 Genomic DNA. No translation available.
    AABR06072531 Genomic DNA. No translation available.
    CH473973 Genomic DNA. Translation: EDM13966.1.
    RefSeqiNP_001100626.1. NM_001107156.1.
    UniGeneiRn.101480.

    Genome annotation databases

    EnsembliENSRNOT00000000891; ENSRNOP00000000891; ENSRNOG00000000702.
    GeneIDi304582.
    KEGGirno:304582.
    UCSCiRGD:1311646. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06072530 Genomic DNA. No translation available.
    AABR06072531 Genomic DNA. No translation available.
    CH473973 Genomic DNA. Translation: EDM13966.1 .
    RefSeqi NP_001100626.1. NM_001107156.1.
    UniGenei Rn.101480.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000000891 ; ENSRNOP00000000891 ; ENSRNOG00000000702 .
    GeneIDi 304582.
    KEGGi rno:304582.
    UCSCi RGD:1311646. rat.

    Organism-specific databases

    CTDi 9733.
    RGDi 1311646. Sart3.

    Phylogenomic databases

    GeneTreei ENSGT00730000111098.
    OMAi TISHIKL.
    OrthoDBi EOG72ZCDB.
    TreeFami TF317554.

    Miscellaneous databases

    NextBioi 653335.
    PROi D3ZAS8.

    Family and domain databases

    Gene3Di 3.30.70.330. 2 hits.
    InterProi IPR003107. HAT.
    IPR008669. LSM_interact.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF05391. Lsm_interact. 1 hit.
    PF00076. RRM_1. 2 hits.
    [Graphical view ]
    SMARTi SM00386. HAT. 7 hits.
    SM00360. RRM. 2 hits.
    [Graphical view ]
    PROSITEi PS50102. RRM. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3ZAS8_RAT
    AccessioniPrimary (citable) accession number: D3ZAS8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3