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Protein
Submitted name:

Protein Sart3

Gene

Sart3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. poly(A) RNA binding Source: Ensembl

GO - Biological processi

  1. cell morphogenesis Source: Ensembl
  2. hematopoietic stem cell proliferation Source: Ensembl
  3. homeostasis of number of cells Source: Ensembl
  4. regulation of gene expression Source: Ensembl
  5. spliceosomal tri-snRNP complex assembly Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Sart3Imported
Submitted name:
Squamous cell carcinoma antigen recognized by T-cells 3 (Predicted)Imported
Gene namesi
Name:Sart3Imported
Synonyms:Sart3_predictedImported
ORF Names:rCG_21169Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 12

Organism-specific databases

RGDi1311646. Sart3.

Subcellular locationi

GO - Cellular componenti

  1. intracellular Source: InterPro
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiD3ZAS8.

Structurei

3D structure databases

ProteinModelPortaliD3ZAS8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000111098.
InParanoidiD3ZAS8.
OMAiTISHIKL.
OrthoDBiEOG72ZCDB.
PhylomeDBiD3ZAS8.
TreeFamiTF317554.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR003107. HAT.
IPR008669. LSM_interact.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF05391. Lsm_interact. 1 hit.
PF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00386. HAT. 7 hits.
SM00360. RRM. 2 hits.
[Graphical view]
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3ZAS8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATATASSAS EPEVEPQARP EAEGEEDEAK PAGVGRKVLS SAETAKAKGP
60 70 80 90 100
EREVHQEGVS ESDGDEEDAA MASSAESSAG EDEWEYDEEE EKNQLEIERL
110 120 130 140 150
EEQLSINGYD YNCHVGLIRL LRLEGELNKV RMARQKMSEI FPLTEELWLE
160 170 180 190 200
WLHDEISMAV DGLDRERVYE LFERAVKDYI CPNIWLEYGQ YSVGGIGQKG
210 220 230 240 250
GLEKVRSVFE RALSSVGLHM TKGLAIWEAY REFESAIVEA ARLERVHSLF
260 270 280 290 300
RRQLAIPLYE MEATFAEYEE WSEEPIPESV LQSYQKALGQ LEKYKPYEEA
310 320 330 340 350
LLQAEAPRLA EYQAYIDFEM KVGDPARIQL IFERALVENC LVPDLWIRYS
360 370 380 390 400
QYLDRQLKVK DLVLSVHSRA VRNCPWTVAL WSRYLLAMER HGLDHQMISA
410 420 430 440 450
TFENALSAGF IQATDYVEIW QVYLDYLRRR VDFRQDSSKE LEELRSMFTR
460 470 480 490 500
ALEYLQQEVE ERFSESGDPS CLIMQSWARV EARLCNNMQK ARELWDSIMT
510 520 530 540 550
RGNAKYANMW LEYYNLERAH GDTQHCRKAL HRAVQCTSDY PEHVCEVLLT
560 570 580 590 600
MERTEGTLED WDLAIQKTET RLARVNEQRM KAAEKEAALV QQEEEKAEQR
610 620 630 640 650
KKVRAEKKAL KKKKTRGADK RKAGEDDDER ECGEEEEEQP SKRRRMENSL
660 670 680 690 700
ASGVASAKEE ETKLSGKCLT IDVAPPSKQK EKAASLKRDM PKVAHDSSKD
710 720 730 740 750
SVTVFVSNLP YSIEEPEVKL RPLFEACGEV VQIRPIFSNR GDFRGYCYVE
760 770 780 790 800
FKEEKSAQQA LDLDRKNVEG RPMFVSPCVD KSKNPDFKMF RYSTTLEKHK
810 820 830 840 850
LFISGLPFSC TKEELEGICK AHGTVKDLRL VTNRAGKPKG LAYVEYENES
860 870 880 890 900
QASQAVLKMD GMTIKENVIK VAISNPPQRK VPEKPEVRTA PGAPMVPRQM
910 920 930 940 950
YGARGKGRTQ LSLLPRALQR QGAAPQAENG PAPGLAATTS VATEAPKMSN
960
ADFAKLLLRK
Length:960
Mass (Da):109,424
Last modified:April 19, 2010 - v1
Checksum:i1D6E9BC6B4009B7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06072530 Genomic DNA. No translation available.
AABR06072531 Genomic DNA. No translation available.
CH473973 Genomic DNA. Translation: EDM13966.1.
RefSeqiNP_001100626.1. NM_001107156.1.
UniGeneiRn.101480.

Genome annotation databases

EnsembliENSRNOT00000000891; ENSRNOP00000000891; ENSRNOG00000000702.
GeneIDi304582.
KEGGirno:304582.
UCSCiRGD:1311646. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06072530 Genomic DNA. No translation available.
AABR06072531 Genomic DNA. No translation available.
CH473973 Genomic DNA. Translation: EDM13966.1.
RefSeqiNP_001100626.1. NM_001107156.1.
UniGeneiRn.101480.

3D structure databases

ProteinModelPortaliD3ZAS8.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiD3ZAS8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000000891; ENSRNOP00000000891; ENSRNOG00000000702.
GeneIDi304582.
KEGGirno:304582.
UCSCiRGD:1311646. rat.

Organism-specific databases

CTDi9733.
RGDi1311646. Sart3.

Phylogenomic databases

GeneTreeiENSGT00730000111098.
InParanoidiD3ZAS8.
OMAiTISHIKL.
OrthoDBiEOG72ZCDB.
PhylomeDBiD3ZAS8.
TreeFamiTF317554.

Miscellaneous databases

NextBioi653335.
PROiD3ZAS8.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR003107. HAT.
IPR008669. LSM_interact.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF05391. Lsm_interact. 1 hit.
PF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00386. HAT. 7 hits.
SM00360. RRM. 2 hits.
[Graphical view]
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3ZAS8_RAT
AccessioniPrimary (citable) accession number: D3ZAS8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 19, 2010
Last sequence update: April 19, 2010
Last modified: March 31, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.