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D3Z9C4

- D3Z9C4_RAT

UniProt

D3Z9C4 - D3Z9C4_RAT

Protein
Submitted name:

Protein B3galnt2

Gene

B3galnt2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. acetylgalactosaminyltransferase activity Source: Ensembl
    2. acetylglucosaminyltransferase activity Source: Ensembl
    3. galactosyltransferase activity Source: InterPro

    GO - Biological processi

    1. protein O-linked glycosylation Source: Ensembl

    Keywords - Molecular functioni

    GlycosyltransferaseSAAS annotation, Transferase

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein B3galnt2Imported
    Submitted name:
    RCG45286, isoform CRA_aImported
    Gene namesi
    Name:B3galnt2Imported
    ORF Names:rCG_45286Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 17

    Organism-specific databases

    RGDi1306946. B3galnt2.

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum Source: Ensembl
    2. Golgi apparatus Source: UniProtKB-KW
    3. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Golgi apparatusSAAS annotation, Membrane

    Family & Domainsi

    Keywords - Domaini

    Transmembrane, Transmembrane helixSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00530000063810.
    KOiK09654.
    OMAiFYRWTVE.
    OrthoDBiEOG7PK8Z9.
    TreeFamiTF314311.

    Family and domain databases

    InterProiIPR002659. Glyco_trans_31.
    [Graphical view]
    PANTHERiPTHR11214. PTHR11214. 1 hit.
    PfamiPF01762. Galactosyl_T. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3Z9C4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRNWLVLLCP CVLGAALHLW HLWLRSPPAP HNTEPSAADQ SALFPQGKFR    50
    HYDVVVGVLS ARNNHELRNV IRNTWLKDLL QHPTLSQRVL VKFIIGARGC 100
    DVPVEDREDP YSCRLLNITS PVLNQEIEAF SFPEDASSSR LSEDRVVSVS 150
    FRVLYPIVIT SVGVFYDASD IGFQRNITVK LYQTEQEEAL FVARFSPPSC 200
    GTQVNKLWYK PVEQFILPES FEGTIVWESQ DLHGLVSRNL HRVTVNDGGG 250
    VLRVLTAGEG ALPHEFMEGV EGVAGGFIYT VQEGDALLRS LYSRPQRLVD 300
    HIRDLQVEDA LLQKESSIYD DIVFVDVVDT YRNVPAKLLN FYRWTVESTS 350
    FSLLLKTDDD CYIDLEAVFN RIAQKNLDGP NFWWGNFRLN WAVDRTGKWQ 400
    ELEYPSPAYP AFACGSGYVI SKDIVDWLAG NSGRLKTYQG EDVSMGIWMA 450
    AIGPKRHQDS LWLCEKTCET GMLSSPQYSP EELSKLWGLK ELCGDPCQCE 500
    AKAR 504
    Length:504
    Mass (Da):57,015
    Last modified:April 20, 2010 - v1
    Checksum:i8DCAEBCACBF4E460
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06091889 Genomic DNA. No translation available.
    CH474030 Genomic DNA. Translation: EDL87430.1.
    CH474030 Genomic DNA. Translation: EDL87431.1.
    RefSeqiNP_001138323.1. NM_001144851.1.
    UniGeneiRn.140763.

    Genome annotation databases

    EnsembliENSRNOT00000022924; ENSRNOP00000022924; ENSRNOG00000016855.
    GeneIDi291212.
    KEGGirno:291212.
    UCSCiRGD:1306946. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06091889 Genomic DNA. No translation available.
    CH474030 Genomic DNA. Translation: EDL87430.1 .
    CH474030 Genomic DNA. Translation: EDL87431.1 .
    RefSeqi NP_001138323.1. NM_001144851.1.
    UniGenei Rn.140763.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000022924 ; ENSRNOP00000022924 ; ENSRNOG00000016855 .
    GeneIDi 291212.
    KEGGi rno:291212.
    UCSCi RGD:1306946. rat.

    Organism-specific databases

    CTDi 148789.
    RGDi 1306946. B3galnt2.

    Phylogenomic databases

    GeneTreei ENSGT00530000063810.
    KOi K09654.
    OMAi FYRWTVE.
    OrthoDBi EOG7PK8Z9.
    TreeFami TF314311.

    Miscellaneous databases

    NextBioi 632277.
    PROi D3Z9C4.

    Family and domain databases

    InterProi IPR002659. Glyco_trans_31.
    [Graphical view ]
    PANTHERi PTHR11214. PTHR11214. 1 hit.
    Pfami PF01762. Galactosyl_T. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3Z9C4_RAT
    AccessioniPrimary (citable) accession number: D3Z9C4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3