Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Protein B3galnt2

Gene

B3galnt2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosyltransferaseSAAS annotation, Transferase

Names & Taxonomyi

Protein namesi
Submitted name:
Protein B3galnt2Imported
Submitted name:
RCG45286, isoform CRA_aImported
Gene namesi
Name:B3galnt2Imported
ORF Names:rCG_45286Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 17

Organism-specific databases

RGDi1306946. B3galnt2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatusSAAS annotation, Membrane

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00530000063810.
KOiK09654.
OMAiFYRWTVE.
OrthoDBiEOG7PK8Z9.
PhylomeDBiD3Z9C4.
TreeFamiTF314311.

Family and domain databases

InterProiIPR002659. Glyco_trans_31.
[Graphical view]
PANTHERiPTHR11214. PTHR11214. 1 hit.
PfamiPF01762. Galactosyl_T. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3Z9C4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNWLVLLCP CVLGAALHLW HLWLRSPPAP HNTEPSAADQ SALFPQGKFR
60 70 80 90 100
HYDVVVGVLS ARNNHELRNV IRNTWLKDLL QHPTLSQRVL VKFIIGARGC
110 120 130 140 150
DVPVEDREDP YSCRLLNITS PVLNQEIEAF SFPEDASSSR LSEDRVVSVS
160 170 180 190 200
FRVLYPIVIT SVGVFYDASD IGFQRNITVK LYQTEQEEAL FVARFSPPSC
210 220 230 240 250
GTQVNKLWYK PVEQFILPES FEGTIVWESQ DLHGLVSRNL HRVTVNDGGG
260 270 280 290 300
VLRVLTAGEG ALPHEFMEGV EGVAGGFIYT VQEGDALLRS LYSRPQRLVD
310 320 330 340 350
HIRDLQVEDA LLQKESSIYD DIVFVDVVDT YRNVPAKLLN FYRWTVESTS
360 370 380 390 400
FSLLLKTDDD CYIDLEAVFN RIAQKNLDGP NFWWGNFRLN WAVDRTGKWQ
410 420 430 440 450
ELEYPSPAYP AFACGSGYVI SKDIVDWLAG NSGRLKTYQG EDVSMGIWMA
460 470 480 490 500
AIGPKRHQDS LWLCEKTCET GMLSSPQYSP EELSKLWGLK ELCGDPCQCE

AKAR
Length:504
Mass (Da):57,015
Last modified:April 20, 2010 - v1
Checksum:i8DCAEBCACBF4E460
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06091889 Genomic DNA. No translation available.
CH474030 Genomic DNA. Translation: EDL87430.1.
CH474030 Genomic DNA. Translation: EDL87431.1.
RefSeqiNP_001138323.1. NM_001144851.1.
UniGeneiRn.140763.

Genome annotation databases

EnsembliENSRNOT00000022924; ENSRNOP00000022924; ENSRNOG00000016855.
GeneIDi291212.
KEGGirno:291212.
UCSCiRGD:1306946. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06091889 Genomic DNA. No translation available.
CH474030 Genomic DNA. Translation: EDL87430.1.
CH474030 Genomic DNA. Translation: EDL87431.1.
RefSeqiNP_001138323.1. NM_001144851.1.
UniGeneiRn.140763.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000022924; ENSRNOP00000022924; ENSRNOG00000016855.
GeneIDi291212.
KEGGirno:291212.
UCSCiRGD:1306946. rat.

Organism-specific databases

CTDi148789.
RGDi1306946. B3galnt2.

Phylogenomic databases

GeneTreeiENSGT00530000063810.
KOiK09654.
OMAiFYRWTVE.
OrthoDBiEOG7PK8Z9.
PhylomeDBiD3Z9C4.
TreeFamiTF314311.

Miscellaneous databases

NextBioi632277.
PROiD3Z9C4.

Family and domain databases

InterProiIPR002659. Glyco_trans_31.
[Graphical view]
PANTHERiPTHR11214. PTHR11214. 1 hit.
PfamiPF01762. Galactosyl_T. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3Z9C4_RAT
AccessioniPrimary (citable) accession number: D3Z9C4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 27, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.