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D3Z9C4

- D3Z9C4_RAT

UniProt

D3Z9C4 - D3Z9C4_RAT

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Protein
Submitted name: Protein B3galnt2
Gene
B3galnt2, rCG_45286
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. acetylgalactosaminyltransferase activity Source: Ensembl
  2. acetylglucosaminyltransferase activity Source: Ensembl
  3. galactosyltransferase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. protein O-linked glycosylation Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

GlycosyltransferaseSAAS annotations, Transferase

Names & Taxonomyi

Protein namesi
Submitted name:
Protein B3galnt2Imported
Submitted name:
RCG45286, isoform CRA_aImported
Gene namesi
Name:B3galnt2Imported
ORF Names:rCG_45286Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 17

Organism-specific databases

RGDi1306946. B3galnt2.

Subcellular locationi

GO - Cellular componenti

  1. Golgi apparatus Source: UniProtKB-KW
  2. endoplasmic reticulum Source: Ensembl
  3. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatusSAAS annotations, Membrane

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00530000063810.
KOiK09654.
OMAiFYRWTVE.
OrthoDBiEOG7PK8Z9.
TreeFamiTF314311.

Family and domain databases

InterProiIPR002659. Glyco_trans_31.
[Graphical view]
PANTHERiPTHR11214. PTHR11214. 1 hit.
PfamiPF01762. Galactosyl_T. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3Z9C4-1 [UniParc]FASTAAdd to Basket

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MRNWLVLLCP CVLGAALHLW HLWLRSPPAP HNTEPSAADQ SALFPQGKFR    50
HYDVVVGVLS ARNNHELRNV IRNTWLKDLL QHPTLSQRVL VKFIIGARGC 100
DVPVEDREDP YSCRLLNITS PVLNQEIEAF SFPEDASSSR LSEDRVVSVS 150
FRVLYPIVIT SVGVFYDASD IGFQRNITVK LYQTEQEEAL FVARFSPPSC 200
GTQVNKLWYK PVEQFILPES FEGTIVWESQ DLHGLVSRNL HRVTVNDGGG 250
VLRVLTAGEG ALPHEFMEGV EGVAGGFIYT VQEGDALLRS LYSRPQRLVD 300
HIRDLQVEDA LLQKESSIYD DIVFVDVVDT YRNVPAKLLN FYRWTVESTS 350
FSLLLKTDDD CYIDLEAVFN RIAQKNLDGP NFWWGNFRLN WAVDRTGKWQ 400
ELEYPSPAYP AFACGSGYVI SKDIVDWLAG NSGRLKTYQG EDVSMGIWMA 450
AIGPKRHQDS LWLCEKTCET GMLSSPQYSP EELSKLWGLK ELCGDPCQCE 500
AKAR 504
Length:504
Mass (Da):57,015
Last modified:April 20, 2010 - v1
Checksum:i8DCAEBCACBF4E460
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06091889 Genomic DNA. No translation available.
CH474030 Genomic DNA. Translation: EDL87430.1.
CH474030 Genomic DNA. Translation: EDL87431.1.
RefSeqiNP_001138323.1. NM_001144851.1.
UniGeneiRn.140763.

Genome annotation databases

EnsembliENSRNOT00000022924; ENSRNOP00000022924; ENSRNOG00000016855.
GeneIDi291212.
KEGGirno:291212.
UCSCiRGD:1306946. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06091889 Genomic DNA. No translation available.
CH474030 Genomic DNA. Translation: EDL87430.1 .
CH474030 Genomic DNA. Translation: EDL87431.1 .
RefSeqi NP_001138323.1. NM_001144851.1.
UniGenei Rn.140763.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000022924 ; ENSRNOP00000022924 ; ENSRNOG00000016855 .
GeneIDi 291212.
KEGGi rno:291212.
UCSCi RGD:1306946. rat.

Organism-specific databases

CTDi 148789.
RGDi 1306946. B3galnt2.

Phylogenomic databases

GeneTreei ENSGT00530000063810.
KOi K09654.
OMAi FYRWTVE.
OrthoDBi EOG7PK8Z9.
TreeFami TF314311.

Miscellaneous databases

NextBioi 632277.
PROi D3Z9C4.

Family and domain databases

InterProi IPR002659. Glyco_trans_31.
[Graphical view ]
PANTHERi PTHR11214. PTHR11214. 1 hit.
Pfami PF01762. Galactosyl_T. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3Z9C4_RAT
AccessioniPrimary (citable) accession number: D3Z9C4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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